Wall clock time and date at job start Mon Mar 8 2021 12:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47306 * 2 1 4 4 C 1.50699 * 109.47270 * 239.99586 * 2 1 3 5 5 C 1.33392 * 122.53910 * 285.00587 * 4 2 1 6 6 S 1.76192 * 125.20457 * 0.02562 * 5 4 2 7 7 O 1.42098 * 106.40396 * 71.99181 * 6 5 4 8 8 O 1.42098 * 106.40394 * 299.07133 * 6 5 4 9 9 N 1.65602 * 107.21926 * 185.53364 * 6 5 4 10 10 C 1.46492 * 120.00451 * 87.67886 * 9 6 5 11 11 C 1.50705 * 112.84715 * 82.56321 * 10 9 6 12 12 C 1.38442 * 120.01127 * 175.19188 * 11 10 9 13 13 F 1.35098 * 120.02492 * 359.74862 * 12 11 10 14 14 C 1.38476 * 119.94770 * 180.02562 * 12 11 10 15 15 C 1.38186 * 119.97187 * 0.02562 * 14 12 11 16 16 C 1.38264 * 120.02652 * 359.97438 * 15 14 12 17 17 C 1.38215 * 120.05155 * 0.02562 * 16 15 14 18 18 C 1.53784 * 113.61305 * 311.37117 * 10 9 6 19 19 C 1.53783 * 87.08066 * 270.79484 * 18 10 9 20 20 H 1.08995 * 113.61369 * 89.11482 * 19 18 10 21 21 F 1.39894 * 113.61405 * 219.93652 * 19 18 10 22 22 C 1.53784 * 113.69291 * 213.83170 * 10 9 6 23 23 S 1.75886 * 109.59076 * 179.75188 * 5 4 2 24 24 C 1.75889 * 90.97058 * 0.22576 * 23 5 4 25 25 C 1.33385 * 109.59504 * 0.02562 * 24 23 5 26 26 H 0.96701 * 113.99844 * 59.99706 * 1 2 3 27 27 H 1.09003 * 109.46532 * 119.99929 * 2 1 3 28 28 H 1.48498 * 109.99960 * 59.99591 * 3 2 1 29 29 H 1.48496 * 109.99853 * 181.31559 * 3 2 1 30 30 H 0.97006 * 119.99470 * 267.68578 * 9 6 5 31 31 H 1.07999 * 120.01650 * 179.97438 * 14 12 11 32 32 H 1.08008 * 119.98167 * 180.02562 * 15 14 12 33 33 H 1.08000 * 119.97189 * 179.97438 * 16 15 14 34 34 H 1.08003 * 119.98493 * 180.02562 * 17 16 15 35 35 H 1.08998 * 113.61582 * 25.34459 * 18 10 9 36 36 H 1.09006 * 113.61339 * 156.25156 * 18 10 9 37 37 H 1.09004 * 113.61227 * 203.67716 * 22 10 9 38 38 H 1.08995 * 113.61283 * 334.58170 * 22 10 9 39 39 H 1.08000 * 125.20002 * 180.02562 * 24 23 5 40 40 H 1.07997 * 122.53956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.8961 -2.0379 -1.3571 6 16 1.2750 -3.1576 -0.1468 7 8 -0.1380 -3.0064 -0.1477 8 8 2.0750 -2.9783 1.0139 9 7 1.5816 -4.6903 -0.6937 10 6 2.8614 -5.3346 -0.3888 11 6 2.8874 -5.9657 0.9796 12 6 3.9891 -6.7011 1.3821 13 9 5.0392 -6.8577 0.5467 14 6 4.0115 -7.2808 2.6394 15 6 2.9341 -7.1251 3.4906 16 6 1.8344 -6.3904 3.0875 17 6 1.8110 -5.8113 1.8327 18 6 4.0829 -4.4473 -0.6813 19 6 4.0688 -5.0326 -2.1033 20 1 3.4467 -4.4712 -2.8004 21 9 5.3442 -5.3037 -2.6104 22 6 3.3672 -6.2634 -1.5052 23 16 2.5571 -2.4989 -2.9204 24 6 2.8593 -0.8136 -3.3231 25 6 2.4680 -0.0353 -2.3131 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5139 0.8900 28 1 1.5615 2.4679 1.2084 29 1 3.5346 1.7702 -0.0320 30 1 0.9137 -5.1615 -1.2162 31 1 4.8702 -7.8551 2.9544 32 1 2.9515 -7.5768 4.4715 33 1 0.9926 -6.2696 3.7533 34 1 0.9516 -5.2373 1.5191 35 1 3.8655 -3.3798 -0.6463 36 1 4.9679 -4.7193 -0.1060 37 1 4.0565 -7.0318 -1.1551 38 1 2.5720 -6.6619 -2.1353 39 1 3.2951 -0.4628 -4.2469 40 1 2.5583 1.0406 -2.3401 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17636828_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:36 Heat of formation + Delta-G solvation = -79.594351 kcal Electronic energy + Delta-G solvation = -33659.403823 eV Core-core repulsion = 28911.569710 eV Total energy + Delta-G solvation = -4747.834113 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -50.08687 -48.62018 -41.28654 -40.17037 -39.16691 -38.19016 -37.19350 -36.92315 -34.06508 -32.17981 -31.56286 -31.44136 -28.23068 -27.35013 -26.16263 -24.46909 -23.78190 -22.91702 -21.79092 -21.22294 -20.19472 -19.85998 -18.91946 -18.55172 -18.15932 -18.04788 -17.47109 -17.28830 -17.10047 -16.83763 -16.78470 -16.22331 -16.13411 -15.94684 -15.87850 -15.67297 -15.26493 -15.10768 -14.57553 -14.49590 -14.28603 -14.07824 -14.03273 -13.91188 -13.66406 -13.44231 -13.16097 -13.14763 -13.07605 -13.02196 -12.76122 -12.72091 -12.53999 -12.26852 -12.22294 -12.08676 -11.63255 -11.60042 -11.00708 -10.64191 -10.54911 -10.00103 -9.77609 -9.68276 -5.17417 -0.87525 -0.80439 0.02527 0.05837 0.17786 0.41798 1.07275 1.12382 1.56013 1.68076 1.88690 2.42766 2.47667 2.90028 2.94941 3.10884 3.13507 3.19889 3.24308 3.31401 3.39147 3.58765 3.72275 3.77203 3.82926 3.91891 4.00887 4.12052 4.21882 4.23917 4.29517 4.34192 4.42237 4.51049 4.53034 4.61750 4.70086 4.75923 4.89571 4.96616 4.99127 5.11717 5.24815 5.38454 5.59303 5.81980 6.41860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.103 4.103 3 Si 0.707 3.293 4 C 0.011 3.989 5 C -0.776 4.776 6 S 2.711 3.289 7 O -0.924 6.924 8 O -0.932 6.932 9 N -1.100 6.100 10 C 0.203 3.797 11 C -0.113 4.113 12 C 0.108 3.892 13 F -0.131 7.131 14 C -0.148 4.148 15 C -0.086 4.086 16 C -0.122 4.122 17 C -0.068 4.068 18 C -0.172 4.172 19 C 0.072 3.928 20 H 0.110 0.890 21 F -0.193 7.193 22 C -0.159 4.159 23 S 0.194 5.806 24 C -0.158 4.158 25 C -0.157 4.157 26 H 0.383 0.617 27 H 0.128 0.872 28 H -0.244 1.244 29 H -0.249 1.249 30 H 0.427 0.573 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.182 0.818 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 0.546 -4.005 4.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.214 4.214 3 Si 0.606 3.394 4 C -0.007 4.007 5 C -0.975 4.975 6 S 2.795 3.205 7 O -0.913 6.913 8 O -0.922 6.922 9 N -0.859 5.859 10 C 0.113 3.887 11 C -0.116 4.116 12 C 0.088 3.912 13 F -0.110 7.110 14 C -0.167 4.167 15 C -0.104 4.104 16 C -0.141 4.141 17 C -0.087 4.087 18 C -0.210 4.210 19 C 0.035 3.965 20 H 0.127 0.873 21 F -0.173 7.173 22 C -0.198 4.198 23 S 0.461 5.539 24 C -0.295 4.295 25 C -0.187 4.187 26 H 0.231 0.769 27 H 0.145 0.855 28 H -0.169 1.169 29 H -0.174 1.174 30 H 0.263 0.737 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.115 0.885 39 H 0.199 0.801 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.207 -0.218 -3.025 3.040 hybrid contribution 0.119 0.750 -0.337 0.831 sum 0.326 0.532 -3.363 3.420 Atomic orbital electron populations 1.86666 1.15177 1.81767 1.49116 1.25474 0.86706 1.12774 0.96489 0.94825 0.81106 0.75816 0.87655 1.19086 0.93557 0.91269 0.96744 1.35810 1.26640 1.14636 1.20417 1.01860 0.73971 0.71485 0.73201 1.93685 1.27412 1.84586 1.85665 1.93657 1.70851 1.84852 1.42867 1.55520 1.24994 1.33270 1.72078 1.19317 0.82571 0.94947 0.91822 1.19600 0.94894 1.00910 0.96192 1.17307 0.84524 1.00078 0.89303 1.91451 1.55355 1.93958 1.70216 1.21183 1.00878 1.01991 0.92604 1.21118 0.92397 0.97308 0.99610 1.21257 0.99134 0.97617 0.96044 1.20666 0.96880 0.97665 0.93471 1.24338 0.99208 1.00688 0.96797 1.23192 0.81369 0.97778 0.94164 0.87331 1.92850 1.41030 1.94599 1.88856 1.24216 1.01773 0.97812 0.95959 1.83997 1.56723 1.06409 1.06789 1.26246 1.03183 0.96621 1.03453 1.20231 1.03603 1.01677 0.93189 0.76924 0.85475 1.16856 1.17370 0.73711 0.84151 0.84495 0.84774 0.86670 0.89597 0.85582 0.85537 0.88459 0.80107 0.82264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.90 12.75 -35.23 -0.45 -1.35 16 2 C -0.10 -0.14 2.33 36.01 0.08 -0.05 16 3 Si 0.71 -0.73 30.24 -169.99 -5.14 -5.88 16 4 C 0.01 0.01 5.14 -106.25 -0.55 -0.54 16 5 C -0.78 -1.09 5.25 29.04 0.15 -0.94 16 6 S 2.71 7.77 3.76 -107.50 -0.40 7.36 16 7 O -0.92 -5.00 17.89 -57.18 -1.02 -6.03 16 8 O -0.93 -4.66 14.15 -57.17 -0.81 -5.47 16 9 N -1.10 0.22 4.34 0.26 0.00 0.22 16 10 C 0.20 0.11 0.97 -132.16 -0.13 -0.02 16 11 C -0.11 -0.21 5.07 -104.55 -0.53 -0.74 16 12 C 0.11 0.18 6.67 -39.42 -0.26 -0.08 16 13 F -0.13 -0.24 12.88 2.25 0.03 -0.21 16 14 C -0.15 -0.08 10.03 -39.51 -0.40 -0.47 16 15 C -0.09 0.01 10.04 -39.59 -0.40 -0.39 16 16 C -0.12 -0.10 10.04 -39.58 -0.40 -0.49 16 17 C -0.07 -0.14 8.35 -39.60 -0.33 -0.47 16 18 C -0.17 -0.19 6.14 -25.92 -0.16 -0.35 16 19 C 0.07 0.00 5.17 -25.91 -0.13 -0.14 16 20 H 0.11 -0.18 4.50 -33.92 -0.15 -0.34 16 21 F -0.19 -0.43 17.41 2.25 0.04 -0.39 16 22 C -0.16 0.14 6.98 -25.91 -0.18 -0.04 16 23 S 0.19 -0.23 18.56 -107.50 -1.99 -2.23 16 24 C -0.16 0.37 11.23 29.04 0.33 0.69 16 25 C -0.16 0.26 8.74 -41.21 -0.36 -0.10 16 26 H 0.38 -1.14 8.70 45.56 0.40 -0.74 16 27 H 0.13 0.36 6.91 -51.93 -0.36 0.00 16 28 H -0.24 -0.47 7.11 56.52 0.40 -0.07 16 29 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 30 H 0.43 -1.31 8.94 -34.47 -0.31 -1.62 16 31 H 0.14 -0.18 8.06 -52.49 -0.42 -0.60 16 32 H 0.14 -0.34 8.06 -52.48 -0.42 -0.76 16 33 H 0.13 -0.16 8.06 -52.49 -0.42 -0.58 16 34 H 0.12 0.20 6.15 -52.48 -0.32 -0.13 16 35 H 0.09 0.10 4.90 -51.93 -0.25 -0.15 16 36 H 0.13 0.19 6.50 -51.93 -0.34 -0.15 16 37 H 0.13 -0.04 5.62 -51.93 -0.29 -0.33 16 38 H 0.10 -0.30 8.14 -51.93 -0.42 -0.73 16 39 H 0.18 -0.94 8.06 -52.49 -0.42 -1.36 16 40 H 0.16 -0.73 5.72 -52.49 -0.30 -1.03 16 LS Contribution 346.67 15.07 5.22 5.22 Total: 0.00 -10.27 346.67 -11.03 -21.30 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: -3.24 Total: -8.44 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -3.26 Total: -4.12 kcal Atomic # 7 Polarization: 0.22 SS G_CDS: 0.00 Total: 0.22 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -2.28 Total: -12.85 kcal Atomic # 9 Polarization: -0.67 SS G_CDS: 0.07 Total: -0.60 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: -5.14 Total: -5.88 kcal Atomic # 16 Polarization: 7.53 SS G_CDS: -2.40 Total: 5.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -10.27 -11.03 -21.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.294 kcal (2) G-P(sol) polarization free energy of solvation -10.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds