Wall clock time and date at job start Mon Mar 8 2021 12:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47306 * 2 1 4 4 C 1.50699 * 109.47270 * 239.99586 * 2 1 3 5 5 C 1.33392 * 122.53910 * 285.00587 * 4 2 1 6 6 S 1.76192 * 125.20457 * 0.02562 * 5 4 2 7 7 O 1.42098 * 106.40396 * 71.99181 * 6 5 4 8 8 O 1.42098 * 106.40394 * 299.07133 * 6 5 4 9 9 N 1.65602 * 107.21926 * 185.53364 * 6 5 4 10 10 C 1.46492 * 120.00451 * 87.67886 * 9 6 5 11 11 C 1.50705 * 112.84715 * 82.56321 * 10 9 6 12 12 C 1.38442 * 120.01127 * 175.19188 * 11 10 9 13 13 F 1.35098 * 120.02492 * 359.74862 * 12 11 10 14 14 C 1.38476 * 119.94770 * 180.02562 * 12 11 10 15 15 C 1.38186 * 119.97187 * 0.02562 * 14 12 11 16 16 C 1.38264 * 120.02652 * 359.97438 * 15 14 12 17 17 C 1.38215 * 120.05155 * 0.02562 * 16 15 14 18 18 C 1.53784 * 113.61305 * 311.37117 * 10 9 6 19 19 C 1.53783 * 87.08066 * 270.79484 * 18 10 9 20 20 H 1.08995 * 113.61369 * 89.11482 * 19 18 10 21 21 F 1.39894 * 113.61405 * 219.93652 * 19 18 10 22 22 C 1.53784 * 113.69291 * 213.83170 * 10 9 6 23 23 S 1.75886 * 109.59076 * 179.75188 * 5 4 2 24 24 C 1.75889 * 90.97058 * 0.22576 * 23 5 4 25 25 C 1.33385 * 109.59504 * 0.02562 * 24 23 5 26 26 H 0.96701 * 113.99844 * 59.99706 * 1 2 3 27 27 H 1.09003 * 109.46532 * 119.99929 * 2 1 3 28 28 H 1.48498 * 109.99960 * 59.99591 * 3 2 1 29 29 H 1.48496 * 109.99853 * 181.31559 * 3 2 1 30 30 H 0.97006 * 119.99470 * 267.68578 * 9 6 5 31 31 H 1.07999 * 120.01650 * 179.97438 * 14 12 11 32 32 H 1.08008 * 119.98167 * 180.02562 * 15 14 12 33 33 H 1.08000 * 119.97189 * 179.97438 * 16 15 14 34 34 H 1.08003 * 119.98493 * 180.02562 * 17 16 15 35 35 H 1.08998 * 113.61582 * 25.34459 * 18 10 9 36 36 H 1.09006 * 113.61339 * 156.25156 * 18 10 9 37 37 H 1.09004 * 113.61227 * 203.67716 * 22 10 9 38 38 H 1.08995 * 113.61283 * 334.58170 * 22 10 9 39 39 H 1.08000 * 125.20002 * 180.02562 * 24 23 5 40 40 H 1.07997 * 122.53956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.8961 -2.0379 -1.3571 6 16 1.2750 -3.1576 -0.1468 7 8 -0.1380 -3.0064 -0.1477 8 8 2.0750 -2.9783 1.0139 9 7 1.5816 -4.6903 -0.6937 10 6 2.8614 -5.3346 -0.3888 11 6 2.8874 -5.9657 0.9796 12 6 3.9891 -6.7011 1.3821 13 9 5.0392 -6.8577 0.5467 14 6 4.0115 -7.2808 2.6394 15 6 2.9341 -7.1251 3.4906 16 6 1.8344 -6.3904 3.0875 17 6 1.8110 -5.8113 1.8327 18 6 4.0829 -4.4473 -0.6813 19 6 4.0688 -5.0326 -2.1033 20 1 3.4467 -4.4712 -2.8004 21 9 5.3442 -5.3037 -2.6104 22 6 3.3672 -6.2634 -1.5052 23 16 2.5571 -2.4989 -2.9204 24 6 2.8593 -0.8136 -3.3231 25 6 2.4680 -0.0353 -2.3131 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5139 0.8900 28 1 1.5615 2.4679 1.2084 29 1 3.5346 1.7702 -0.0320 30 1 0.9137 -5.1615 -1.2162 31 1 4.8702 -7.8551 2.9544 32 1 2.9515 -7.5768 4.4715 33 1 0.9926 -6.2696 3.7533 34 1 0.9516 -5.2373 1.5191 35 1 3.8655 -3.3798 -0.6463 36 1 4.9679 -4.7193 -0.1060 37 1 4.0565 -7.0318 -1.1551 38 1 2.5720 -6.6619 -2.1353 39 1 3.2951 -0.4628 -4.2469 40 1 2.5583 1.0406 -2.3401 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17636828_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:35 Heat of formation + Delta-G solvation = -81.788616 kcal Electronic energy + Delta-G solvation = -33659.498974 eV Core-core repulsion = 28911.569710 eV Total energy + Delta-G solvation = -4747.929264 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.18581 -48.72189 -41.33014 -40.12933 -39.20300 -38.46571 -37.28924 -37.14241 -34.11499 -32.21857 -31.50329 -31.47581 -28.26839 -27.36148 -26.19511 -24.40359 -23.84053 -22.95680 -21.84585 -21.24053 -20.29069 -19.86620 -18.99032 -18.63467 -18.20479 -18.10991 -17.54456 -17.31876 -17.20064 -16.92611 -16.83858 -16.28458 -16.22284 -15.96501 -15.93688 -15.75086 -15.19901 -15.16307 -14.62657 -14.54449 -14.30858 -14.14098 -14.07261 -13.90447 -13.73538 -13.54678 -13.40617 -13.37137 -13.14294 -13.08218 -12.85357 -12.73505 -12.59420 -12.34050 -12.27810 -12.13709 -11.63533 -11.59119 -11.04112 -10.68048 -10.47601 -10.05825 -9.75521 -9.66847 -5.12788 -1.03550 -0.75685 0.00359 0.06752 0.10893 0.54675 1.10212 1.22181 1.58614 1.60439 1.90061 2.30963 2.39955 2.86616 2.92098 3.05504 3.10241 3.16089 3.17401 3.31702 3.40009 3.60722 3.66422 3.71478 3.94417 3.98601 4.04116 4.14968 4.21218 4.23656 4.26966 4.31125 4.42715 4.51846 4.65623 4.66559 4.74085 4.83008 4.91210 4.97896 5.04185 5.10623 5.22056 5.34388 5.68682 5.79115 6.58802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.129 4.129 3 Si 0.820 3.180 4 C 0.004 3.996 5 C -0.805 4.805 6 S 2.719 3.281 7 O -0.960 6.960 8 O -0.965 6.965 9 N -1.088 6.088 10 C 0.202 3.798 11 C -0.123 4.123 12 C 0.092 3.908 13 F -0.135 7.135 14 C -0.151 4.151 15 C -0.086 4.086 16 C -0.131 4.131 17 C -0.091 4.091 18 C -0.181 4.181 19 C 0.074 3.926 20 H 0.127 0.873 21 F -0.205 7.205 22 C -0.152 4.152 23 S 0.208 5.792 24 C -0.144 4.144 25 C -0.167 4.167 26 H 0.401 0.599 27 H 0.100 0.900 28 H -0.290 1.290 29 H -0.272 1.272 30 H 0.439 0.561 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.150 0.850 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.217 0.783 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 0.825 -5.655 5.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.238 4.238 3 Si 0.721 3.279 4 C -0.014 4.014 5 C -1.007 5.007 6 S 2.807 3.193 7 O -0.950 6.950 8 O -0.955 6.955 9 N -0.849 5.849 10 C 0.112 3.888 11 C -0.126 4.126 12 C 0.072 3.928 13 F -0.114 7.114 14 C -0.170 4.170 15 C -0.104 4.104 16 C -0.149 4.149 17 C -0.110 4.110 18 C -0.220 4.220 19 C 0.037 3.963 20 H 0.144 0.856 21 F -0.186 7.186 22 C -0.191 4.191 23 S 0.475 5.525 24 C -0.281 4.281 25 C -0.196 4.196 26 H 0.252 0.748 27 H 0.118 0.882 28 H -0.217 1.217 29 H -0.198 1.198 30 H 0.278 0.722 31 H 0.176 0.824 32 H 0.181 0.819 33 H 0.167 0.833 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.234 0.766 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.679 0.005 -4.688 4.737 hybrid contribution -0.026 0.655 0.210 0.688 sum 0.653 0.659 -4.478 4.573 Atomic orbital electron populations 1.86617 1.15676 1.82467 1.50533 1.25869 0.86707 1.15171 0.96064 0.93653 0.77751 0.71505 0.84984 1.19299 0.93583 0.91287 0.97215 1.35515 1.28748 1.14758 1.21664 1.01110 0.72986 0.72010 0.73224 1.93630 1.29536 1.85384 1.86464 1.93607 1.71137 1.85524 1.45192 1.55175 1.25302 1.32368 1.72082 1.19342 0.82347 0.95135 0.91971 1.19761 0.94974 1.01078 0.96809 1.17495 0.84550 1.00797 0.89918 1.91437 1.55457 1.94051 1.70422 1.21493 1.01665 1.01678 0.92167 1.21440 0.91647 0.96712 1.00558 1.21559 1.00109 0.97394 0.95845 1.20814 0.97145 0.98541 0.94452 1.24382 0.99222 1.00642 0.97779 1.23337 0.80938 0.98241 0.93782 0.85624 1.92822 1.42101 1.94720 1.88949 1.24212 1.02169 0.97229 0.95464 1.83823 1.56060 1.07770 1.04873 1.26739 1.01599 0.95418 1.04310 1.20480 1.03493 1.03265 0.92342 0.74833 0.88204 1.21697 1.19802 0.72201 0.82402 0.81852 0.83255 0.87237 0.90008 0.86486 0.86003 0.85821 0.76624 0.79229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.81 12.75 -148.98 -1.90 -4.71 16 2 C -0.13 -0.54 2.33 71.24 0.17 -0.37 16 3 Si 0.82 -1.65 30.24 68.60 2.07 0.42 16 4 C 0.00 0.01 5.14 -20.92 -0.11 -0.10 16 5 C -0.80 -3.05 5.25 66.72 0.35 -2.70 16 6 S 2.72 21.77 3.76 -56.49 -0.21 21.56 16 7 O -0.96 -13.00 17.89 -127.99 -2.29 -15.29 16 8 O -0.96 -12.72 14.15 -128.00 -1.81 -14.53 16 9 N -1.09 -1.13 4.34 -153.08 -0.66 -1.80 16 10 C 0.20 0.47 0.97 3.39 0.00 0.47 16 11 C -0.12 -0.65 5.07 -19.82 -0.10 -0.75 16 12 C 0.09 0.42 6.67 22.38 0.15 0.57 16 13 F -0.14 -0.65 12.88 44.97 0.58 -0.07 16 14 C -0.15 -0.21 10.03 22.31 0.22 0.01 16 15 C -0.09 0.01 10.04 22.26 0.22 0.23 16 16 C -0.13 -0.33 10.04 22.27 0.22 -0.11 16 17 C -0.09 -0.54 8.35 22.26 0.19 -0.35 16 18 C -0.18 -0.65 6.14 31.12 0.19 -0.46 16 19 C 0.07 0.01 5.17 31.12 0.16 0.17 16 20 H 0.13 -0.48 4.50 -13.84 -0.06 -0.54 16 21 F -0.21 -0.96 17.41 44.97 0.78 -0.17 16 22 C -0.15 0.23 6.98 31.12 0.22 0.45 16 23 S 0.21 -0.64 18.56 -56.49 -1.05 -1.69 16 24 C -0.14 0.99 11.23 66.72 0.75 1.74 16 25 C -0.17 0.81 8.74 21.22 0.19 1.00 16 26 H 0.40 -2.04 8.70 -74.06 -0.64 -2.69 16 27 H 0.10 0.90 6.91 -2.39 -0.02 0.88 16 28 H -0.29 -1.49 7.11 99.48 0.71 -0.78 16 29 H -0.27 -0.43 7.11 99.48 0.71 0.28 16 30 H 0.44 -2.22 8.94 -96.74 -0.86 -3.08 16 31 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 32 H 0.16 -0.98 8.06 -2.91 -0.02 -1.01 16 33 H 0.15 -0.24 8.06 -2.91 -0.02 -0.26 16 34 H 0.11 0.68 6.15 -2.91 -0.02 0.66 16 35 H 0.08 0.34 4.90 -2.39 -0.01 0.33 16 36 H 0.12 0.59 6.50 -2.38 -0.02 0.58 16 37 H 0.12 -0.01 5.62 -2.38 -0.01 -0.02 16 38 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.22 -3.08 8.06 -2.91 -0.02 -3.10 16 40 H 0.19 -2.24 5.72 -2.91 -0.02 -2.26 16 Total: 0.00 -26.83 346.67 -2.03 -28.86 By element: Atomic # 1 Polarization: -12.03 SS G_CDS: -0.36 Total: -12.40 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 2.82 Total: -0.20 kcal Atomic # 7 Polarization: -1.13 SS G_CDS: -0.66 Total: -1.80 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -6.00 Total: -34.52 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 1.36 Total: -0.24 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: 2.07 Total: 0.42 kcal Atomic # 16 Polarization: 21.14 SS G_CDS: -1.26 Total: 19.88 kcal Total: -26.83 -2.03 -28.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.931 kcal (2) G-P(sol) polarization free energy of solvation -26.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds