Wall clock time and date at job start Mon Mar 8 2021 12:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86299 * 109.46903 * 2 1 4 4 C 1.50704 * 109.46995 * 120.00029 * 2 1 3 5 5 C 1.33380 * 125.20658 * 45.34498 * 4 2 1 6 6 S 1.76206 * 122.53892 * 0.02621 * 5 4 2 7 7 O 1.42100 * 106.40227 * 176.68399 * 6 5 4 8 8 O 1.42101 * 106.40044 * 43.76525 * 6 5 4 9 9 N 1.65591 * 107.21640 * 290.22601 * 6 5 4 10 10 C 1.46499 * 120.00273 * 289.73808 * 9 6 5 11 11 C 1.50703 * 112.84899 * 290.38908 * 10 9 6 12 12 C 1.38439 * 120.01406 * 171.58113 * 11 10 9 13 13 F 1.35104 * 120.02226 * 0.02562 * 12 11 10 14 14 C 1.38483 * 119.95020 * 179.77017 * 12 11 10 15 15 C 1.38173 * 119.97197 * 0.52633 * 14 12 11 16 16 C 1.38275 * 120.02514 * 359.70577 * 15 14 12 17 17 C 1.38213 * 120.01304 * 351.85731 * 11 10 9 18 18 C 1.53780 * 113.61895 * 159.19206 * 10 9 6 19 19 C 1.53781 * 87.07829 * 270.88503 * 18 10 9 20 20 H 1.09005 * 113.61312 * 89.11732 * 19 18 10 21 21 F 1.39900 * 113.61210 * 220.01688 * 19 18 10 22 22 C 1.53776 * 87.08286 * 334.56675 * 19 18 10 23 23 C 1.38417 * 114.92198 * 180.28756 * 5 4 2 24 24 C 1.33395 * 114.92126 * 359.49617 * 23 5 4 25 25 S 1.75878 * 109.59032 * 0.47971 * 24 23 5 26 26 H 0.96698 * 114.00226 * 306.74608 * 1 2 3 27 27 H 1.08998 * 109.46824 * 240.00143 * 2 1 3 28 28 H 1.48497 * 110.00181 * 183.78608 * 3 2 1 29 29 H 1.48502 * 110.00055 * 305.10477 * 3 2 1 30 30 H 0.97005 * 120.00107 * 109.74380 * 9 6 5 31 31 H 1.07997 * 120.00858 * 180.25125 * 14 12 11 32 32 H 1.08002 * 119.98764 * 179.72539 * 15 14 12 33 33 H 1.07997 * 119.97080 * 180.02562 * 16 15 14 34 34 H 1.08005 * 119.99156 * 359.95244 * 17 11 10 35 35 H 1.09004 * 113.61424 * 25.42845 * 18 10 9 36 36 H 1.08998 * 113.61941 * 156.33860 * 18 10 9 37 37 H 1.09002 * 113.61115 * 270.88631 * 22 19 18 38 38 H 1.09004 * 113.69007 * 139.99383 * 22 19 18 39 39 H 1.08003 * 122.53871 * 179.73422 * 23 5 4 40 40 H 1.08000 * 125.20447 * 180.20411 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.4655 -1.8720 1.6918 6 16 0.1629 -2.7534 0.8974 7 8 -0.0028 -3.9642 1.6224 8 8 0.4425 -2.7135 -0.4953 9 7 -1.2267 -1.8808 1.1206 10 6 -1.8339 -1.7980 2.4512 11 6 -2.4315 -3.1052 2.9041 12 6 -2.8880 -3.2446 4.2036 13 9 -2.7986 -2.2087 5.0663 14 6 -3.4412 -4.4449 4.6171 15 6 -3.5270 -5.5054 3.7355 16 6 -3.0662 -5.3666 2.4392 17 6 -2.5187 -4.1673 2.0240 18 6 -2.7781 -0.5965 2.6239 19 6 -1.5468 0.2056 3.0773 20 1 -1.0166 0.6918 2.2584 21 9 -1.8034 1.0684 4.1483 22 6 -0.9270 -1.1361 3.5020 23 6 2.0790 -2.3297 2.8451 24 6 3.0503 -1.5451 3.3145 25 16 3.2212 -0.1343 2.2783 26 1 -0.3933 0.5285 0.7078 27 1 1.7923 -0.5138 -0.8900 28 1 3.5320 1.7713 -0.0921 29 1 1.4627 2.5028 -1.1416 30 1 -1.6387 -1.4245 0.3702 31 1 -3.8014 -4.5534 5.6294 32 1 -3.9543 -6.4431 4.0590 33 1 -3.1341 -6.1959 1.7508 34 1 -2.1592 -4.0601 1.0112 35 1 -3.2094 -0.2420 1.6877 36 1 -3.5221 -0.7349 3.4083 37 1 -1.1650 -1.4222 4.5266 38 1 0.1361 -1.2187 3.2756 39 1 1.7954 -3.2542 3.3262 40 1 3.6384 -1.7434 4.1983 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17636828_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:41 Heat of formation + Delta-G solvation = -73.096587 kcal Electronic energy + Delta-G solvation = -34605.170507 eV Core-core repulsion = 29857.618159 eV Total energy + Delta-G solvation = -4747.552349 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -50.03147 -48.57730 -41.21400 -39.91300 -38.92043 -38.35756 -37.57945 -36.80774 -33.80861 -31.98631 -31.95942 -31.31700 -27.83019 -27.15771 -26.04906 -24.49939 -23.65227 -22.79868 -21.90434 -21.26741 -20.05426 -19.55441 -18.84136 -18.53733 -18.25661 -17.81040 -17.36524 -17.28230 -17.01357 -16.89687 -16.76818 -16.51455 -15.99067 -15.84637 -15.66277 -15.43675 -15.29931 -14.92837 -14.73404 -14.44020 -14.30967 -14.14408 -14.02407 -13.89048 -13.63611 -13.18070 -13.06492 -12.97160 -12.91021 -12.86369 -12.81915 -12.71682 -12.36876 -12.24752 -12.13342 -11.88073 -11.60773 -11.51182 -11.18785 -10.75425 -10.27362 -9.87005 -9.80126 -9.57372 -5.37634 -0.74511 -0.57307 0.16610 0.21584 0.33087 0.50225 0.87802 1.01726 1.35746 1.67984 1.90721 2.54826 2.66341 2.86318 3.02805 3.04535 3.11438 3.21431 3.26206 3.30933 3.42617 3.58381 3.74495 3.85669 4.01195 4.09589 4.12208 4.24543 4.28582 4.36373 4.41848 4.44306 4.50275 4.60539 4.63553 4.72009 4.81042 4.88941 5.02483 5.06397 5.09269 5.25600 5.37999 5.52133 5.89800 5.94543 5.98511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.061 4.061 3 Si 0.661 3.339 4 C -0.105 4.105 5 C -0.663 4.663 6 S 2.712 3.288 7 O -0.945 6.945 8 O -0.944 6.944 9 N -1.084 6.084 10 C 0.202 3.798 11 C -0.124 4.124 12 C 0.108 3.892 13 F -0.133 7.133 14 C -0.156 4.156 15 C -0.085 4.085 16 C -0.127 4.127 17 C -0.041 4.041 18 C -0.147 4.147 19 C 0.077 3.923 20 H 0.103 0.897 21 F -0.196 7.196 22 C -0.198 4.198 23 C -0.077 4.077 24 C -0.208 4.208 25 S 0.160 5.840 26 H 0.374 0.626 27 H 0.152 0.848 28 H -0.231 1.231 29 H -0.222 1.222 30 H 0.430 0.570 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.160 0.840 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 2.498 1.857 3.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.173 4.173 3 Si 0.558 3.442 4 C -0.226 4.226 5 C -0.762 4.762 6 S 2.798 3.202 7 O -0.935 6.935 8 O -0.934 6.934 9 N -0.845 5.845 10 C 0.111 3.889 11 C -0.126 4.126 12 C 0.089 3.911 13 F -0.111 7.111 14 C -0.174 4.174 15 C -0.103 4.103 16 C -0.145 4.145 17 C -0.060 4.060 18 C -0.186 4.186 19 C 0.041 3.959 20 H 0.121 0.879 21 F -0.177 7.177 22 C -0.236 4.236 23 C -0.104 4.104 24 C -0.343 4.343 25 S 0.424 5.576 26 H 0.224 0.776 27 H 0.169 0.831 28 H -0.155 1.155 29 H -0.145 1.145 30 H 0.269 0.731 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.115 0.885 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.112 0.888 39 H 0.177 0.823 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.990 3.232 0.687 3.449 hybrid contribution -0.451 -0.928 0.175 1.047 sum 0.539 2.304 0.863 2.518 Atomic orbital electron populations 1.86581 1.16727 1.74086 1.56257 1.25018 0.85231 1.11224 0.95853 0.95110 0.82829 0.75810 0.90418 1.25055 0.99990 0.97297 1.00292 1.29959 1.24679 1.09870 1.11742 1.01626 0.72288 0.72964 0.73337 1.93655 1.84982 1.40586 1.74237 1.93614 1.83923 1.86257 1.29586 1.55438 1.42128 1.71713 1.15212 1.19306 0.95142 0.91891 0.82513 1.19606 1.03785 0.96238 0.93016 1.17309 1.01774 0.85251 0.86796 1.91414 1.93792 1.56628 1.69283 1.21114 1.02617 0.92171 1.01544 1.21083 0.97785 0.98335 0.93095 1.21212 0.99050 0.97731 0.96524 1.20680 0.94614 0.91725 0.98959 1.23971 0.97188 0.92990 1.04476 1.22872 0.97861 0.87717 0.87442 0.87917 1.92855 1.94884 1.72110 1.57817 1.24770 1.01406 0.94896 1.02525 1.19766 0.95422 1.01408 0.93849 1.25934 1.04374 0.98784 1.05253 1.84454 1.32998 1.22672 1.17466 0.77577 0.83132 1.15454 1.14466 0.73104 0.84486 0.84838 0.85127 0.86245 0.88472 0.86768 0.85131 0.88751 0.82250 0.80570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.35 8.41 -47.29 -0.40 0.95 16 2 C -0.06 0.08 2.06 36.01 0.07 0.16 16 3 Si 0.66 -1.66 30.97 -169.99 -5.26 -6.92 16 4 C -0.11 0.06 5.78 -36.00 -0.21 -0.14 16 5 C -0.66 -0.31 3.74 -41.21 -0.15 -0.46 16 6 S 2.71 4.40 4.34 -107.50 -0.47 3.93 16 7 O -0.94 -3.44 13.48 -57.17 -0.77 -4.21 16 8 O -0.94 -4.19 16.32 -63.14 -1.03 -5.22 16 9 N -1.08 1.54 3.14 0.26 0.00 1.54 16 10 C 0.20 -0.21 1.17 -132.16 -0.15 -0.36 16 11 C -0.12 -0.12 4.79 -104.56 -0.50 -0.62 16 12 C 0.11 0.13 6.70 -39.42 -0.26 -0.13 16 13 F -0.13 -0.17 12.91 2.25 0.03 -0.15 16 14 C -0.16 -0.08 10.03 -39.51 -0.40 -0.47 16 15 C -0.08 0.00 10.04 -39.59 -0.40 -0.40 16 16 C -0.13 -0.10 10.04 -39.57 -0.40 -0.50 16 17 C -0.04 -0.06 7.23 -39.60 -0.29 -0.35 16 18 C -0.15 0.35 6.98 -25.92 -0.18 0.17 16 19 C 0.08 -0.17 5.58 -25.92 -0.14 -0.32 16 20 H 0.10 -0.55 5.42 -51.93 -0.28 -0.83 16 21 F -0.20 -0.13 17.41 2.25 0.04 -0.10 16 22 C -0.20 0.20 6.78 -25.92 -0.18 0.03 16 23 C -0.08 0.00 8.25 -41.21 -0.34 -0.34 16 24 C -0.21 0.26 11.23 29.04 0.33 0.58 16 25 S 0.16 -0.24 20.72 -107.50 -2.23 -2.47 16 26 H 0.37 -2.25 5.74 45.56 0.26 -1.99 16 27 H 0.15 -0.05 7.73 -51.93 -0.40 -0.45 16 28 H -0.23 0.11 7.11 56.52 0.40 0.51 16 29 H -0.22 0.07 7.11 56.52 0.40 0.47 16 30 H 0.43 -1.42 7.50 -34.47 -0.26 -1.68 16 31 H 0.14 -0.16 8.06 -52.49 -0.42 -0.58 16 32 H 0.13 -0.29 8.06 -52.49 -0.42 -0.71 16 33 H 0.13 -0.11 8.06 -52.49 -0.42 -0.54 16 34 H 0.12 0.12 6.01 -52.48 -0.32 -0.19 16 35 H 0.10 -0.42 8.10 -51.93 -0.42 -0.84 16 36 H 0.11 -0.16 6.82 -51.93 -0.35 -0.51 16 37 H 0.13 0.00 5.33 -51.93 -0.28 -0.28 16 38 H 0.09 -0.14 3.77 -51.93 -0.20 -0.33 16 39 H 0.16 -0.05 7.74 -52.48 -0.41 -0.46 16 40 H 0.18 -0.59 8.06 -52.49 -0.42 -1.01 16 LS Contribution 338.72 15.07 5.10 5.10 Total: 0.00 -8.40 338.72 -11.72 -20.12 By element: Atomic # 1 Polarization: -5.88 SS G_CDS: -3.54 Total: -9.42 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.20 Total: -3.17 kcal Atomic # 7 Polarization: 1.54 SS G_CDS: 0.00 Total: 1.54 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -2.20 Total: -8.48 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.07 Total: -0.24 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -5.26 Total: -6.92 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -2.69 Total: 1.46 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -8.40 -11.72 -20.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.973 kcal (2) G-P(sol) polarization free energy of solvation -8.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds