Wall clock time and date at job start Mon Mar 8 2021 12:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86299 * 109.46903 * 2 1 4 4 C 1.50704 * 109.46995 * 120.00029 * 2 1 3 5 5 C 1.33380 * 125.20658 * 45.34498 * 4 2 1 6 6 S 1.76206 * 122.53892 * 0.02621 * 5 4 2 7 7 O 1.42100 * 106.40227 * 176.68399 * 6 5 4 8 8 O 1.42101 * 106.40044 * 43.76525 * 6 5 4 9 9 N 1.65591 * 107.21640 * 290.22601 * 6 5 4 10 10 C 1.46499 * 120.00273 * 289.73808 * 9 6 5 11 11 C 1.50703 * 112.84899 * 290.38908 * 10 9 6 12 12 C 1.38439 * 120.01406 * 171.58113 * 11 10 9 13 13 F 1.35104 * 120.02226 * 0.02562 * 12 11 10 14 14 C 1.38483 * 119.95020 * 179.77017 * 12 11 10 15 15 C 1.38173 * 119.97197 * 0.52633 * 14 12 11 16 16 C 1.38275 * 120.02514 * 359.70577 * 15 14 12 17 17 C 1.38213 * 120.01304 * 351.85731 * 11 10 9 18 18 C 1.53780 * 113.61895 * 159.19206 * 10 9 6 19 19 C 1.53781 * 87.07829 * 270.88503 * 18 10 9 20 20 H 1.09005 * 113.61312 * 89.11732 * 19 18 10 21 21 F 1.39900 * 113.61210 * 220.01688 * 19 18 10 22 22 C 1.53776 * 87.08286 * 334.56675 * 19 18 10 23 23 C 1.38417 * 114.92198 * 180.28756 * 5 4 2 24 24 C 1.33395 * 114.92126 * 359.49617 * 23 5 4 25 25 S 1.75878 * 109.59032 * 0.47971 * 24 23 5 26 26 H 0.96698 * 114.00226 * 306.74608 * 1 2 3 27 27 H 1.08998 * 109.46824 * 240.00143 * 2 1 3 28 28 H 1.48497 * 110.00181 * 183.78608 * 3 2 1 29 29 H 1.48502 * 110.00055 * 305.10477 * 3 2 1 30 30 H 0.97005 * 120.00107 * 109.74380 * 9 6 5 31 31 H 1.07997 * 120.00858 * 180.25125 * 14 12 11 32 32 H 1.08002 * 119.98764 * 179.72539 * 15 14 12 33 33 H 1.07997 * 119.97080 * 180.02562 * 16 15 14 34 34 H 1.08005 * 119.99156 * 359.95244 * 17 11 10 35 35 H 1.09004 * 113.61424 * 25.42845 * 18 10 9 36 36 H 1.08998 * 113.61941 * 156.33860 * 18 10 9 37 37 H 1.09002 * 113.61115 * 270.88631 * 22 19 18 38 38 H 1.09004 * 113.69007 * 139.99383 * 22 19 18 39 39 H 1.08003 * 122.53871 * 179.73422 * 23 5 4 40 40 H 1.08000 * 125.20447 * 180.20411 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.4655 -1.8720 1.6918 6 16 0.1629 -2.7534 0.8974 7 8 -0.0028 -3.9642 1.6224 8 8 0.4425 -2.7135 -0.4953 9 7 -1.2267 -1.8808 1.1206 10 6 -1.8339 -1.7980 2.4512 11 6 -2.4315 -3.1052 2.9041 12 6 -2.8880 -3.2446 4.2036 13 9 -2.7986 -2.2087 5.0663 14 6 -3.4412 -4.4449 4.6171 15 6 -3.5270 -5.5054 3.7355 16 6 -3.0662 -5.3666 2.4392 17 6 -2.5187 -4.1673 2.0240 18 6 -2.7781 -0.5965 2.6239 19 6 -1.5468 0.2056 3.0773 20 1 -1.0166 0.6918 2.2584 21 9 -1.8034 1.0684 4.1483 22 6 -0.9270 -1.1361 3.5020 23 6 2.0790 -2.3297 2.8451 24 6 3.0503 -1.5451 3.3145 25 16 3.2212 -0.1343 2.2783 26 1 -0.3933 0.5285 0.7078 27 1 1.7923 -0.5138 -0.8900 28 1 3.5320 1.7713 -0.0921 29 1 1.4627 2.5028 -1.1416 30 1 -1.6387 -1.4245 0.3702 31 1 -3.8014 -4.5534 5.6294 32 1 -3.9543 -6.4431 4.0590 33 1 -3.1341 -6.1959 1.7508 34 1 -2.1592 -4.0601 1.0112 35 1 -3.2094 -0.2420 1.6877 36 1 -3.5221 -0.7349 3.4083 37 1 -1.1650 -1.4222 4.5266 38 1 0.1361 -1.2187 3.2756 39 1 1.7954 -3.2542 3.3262 40 1 3.6384 -1.7434 4.1983 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17636828_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:39 Heat of formation + Delta-G solvation = -70.738436 kcal Electronic energy + Delta-G solvation = -34605.068250 eV Core-core repulsion = 29857.618159 eV Total energy + Delta-G solvation = -4747.450092 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.08853 -48.51808 -41.15894 -39.84456 -38.88383 -38.45523 -37.53513 -37.01048 -33.75055 -31.96561 -31.88808 -31.33207 -27.74464 -27.03429 -25.98076 -24.42541 -23.68228 -22.75863 -21.88705 -21.19530 -20.08311 -19.46683 -18.82229 -18.58106 -18.21763 -17.77812 -17.29921 -17.22259 -16.94790 -16.90418 -16.78352 -16.42008 -16.05335 -15.79421 -15.62155 -15.37262 -15.27933 -14.93460 -14.68734 -14.41190 -14.24870 -14.11408 -13.96308 -13.86243 -13.66026 -13.23624 -13.14235 -13.06967 -12.94214 -12.86426 -12.79096 -12.64245 -12.34662 -12.22235 -12.10440 -11.81985 -11.53049 -11.38226 -11.05654 -10.68620 -10.20507 -9.83369 -9.77179 -9.60007 -5.19364 -0.78121 -0.55673 0.14643 0.29025 0.29994 0.58814 1.01035 1.05477 1.51682 1.82700 1.90356 2.53747 2.63529 3.05431 3.13550 3.14905 3.22162 3.23859 3.29718 3.36869 3.42408 3.76268 3.81459 3.89839 4.10964 4.16343 4.16860 4.31721 4.34088 4.41598 4.45776 4.56520 4.65000 4.70770 4.72807 4.85167 4.89015 4.91733 5.06441 5.08066 5.14067 5.31393 5.37040 5.49945 5.93283 6.07420 6.35098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.073 4.073 3 Si 0.741 3.259 4 C -0.109 4.109 5 C -0.671 4.671 6 S 2.720 3.280 7 O -0.971 6.971 8 O -0.977 6.977 9 N -1.070 6.070 10 C 0.201 3.799 11 C -0.129 4.129 12 C 0.093 3.907 13 F -0.136 7.136 14 C -0.163 4.163 15 C -0.088 4.088 16 C -0.139 4.139 17 C -0.061 4.061 18 C -0.143 4.143 19 C 0.078 3.922 20 H 0.137 0.863 21 F -0.212 7.212 22 C -0.204 4.204 23 C -0.093 4.093 24 C -0.206 4.206 25 S 0.187 5.813 26 H 0.389 0.611 27 H 0.138 0.862 28 H -0.257 1.257 29 H -0.252 1.252 30 H 0.439 0.561 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.156 0.844 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 3.533 2.234 4.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.184 4.184 3 Si 0.640 3.360 4 C -0.230 4.230 5 C -0.773 4.773 6 S 2.809 3.191 7 O -0.961 6.961 8 O -0.967 6.967 9 N -0.833 5.833 10 C 0.111 3.889 11 C -0.131 4.131 12 C 0.074 3.926 13 F -0.115 7.115 14 C -0.181 4.181 15 C -0.106 4.106 16 C -0.157 4.157 17 C -0.080 4.080 18 C -0.182 4.182 19 C 0.042 3.958 20 H 0.154 0.846 21 F -0.192 7.192 22 C -0.242 4.242 23 C -0.121 4.121 24 C -0.341 4.341 25 S 0.451 5.549 26 H 0.242 0.758 27 H 0.155 0.845 28 H -0.182 1.182 29 H -0.176 1.176 30 H 0.281 0.719 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.174 0.826 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.004 4.245 1.064 4.490 hybrid contribution -0.437 -1.268 0.071 1.343 sum 0.567 2.976 1.135 3.235 Atomic orbital electron populations 1.86554 1.16122 1.74639 1.57092 1.25199 0.85939 1.12155 0.95071 0.94274 0.80008 0.73076 0.88632 1.25218 1.00177 0.97083 1.00533 1.29729 1.24893 1.10392 1.12267 1.01004 0.72781 0.72907 0.72424 1.93619 1.85526 1.42535 1.74428 1.93569 1.84678 1.86879 1.31605 1.55104 1.41198 1.71406 1.15601 1.19325 0.95631 0.91595 0.82346 1.19794 1.03497 0.96938 0.92921 1.17486 1.02519 0.85581 0.87031 1.91405 1.93914 1.56796 1.69354 1.21391 1.02303 0.92048 1.02379 1.21356 0.97448 0.99119 0.92677 1.21492 0.98956 0.97966 0.97296 1.20835 0.95470 0.92446 0.99222 1.23967 0.96875 0.91999 1.05348 1.23128 0.97910 0.87176 0.87578 0.84630 1.92823 1.95009 1.72527 1.58889 1.24774 1.01719 0.95862 1.01851 1.19805 0.96309 1.01844 0.94166 1.26227 1.03778 0.98456 1.05669 1.84373 1.31897 1.22035 1.16603 0.75814 0.84500 1.18237 1.17621 0.71941 0.83102 0.82639 0.83948 0.86425 0.86013 0.87749 0.86366 0.88343 0.82645 0.78581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 3.00 8.41 -137.45 -1.16 1.84 16 2 C -0.07 0.20 2.06 71.24 0.15 0.35 16 3 Si 0.74 -4.19 30.97 68.60 2.12 -2.07 16 4 C -0.11 0.15 5.78 24.59 0.14 0.29 16 5 C -0.67 -0.95 3.74 21.21 0.08 -0.87 16 6 S 2.72 11.98 4.34 -56.49 -0.25 11.73 16 7 O -0.97 -8.79 13.48 -128.00 -1.73 -10.51 16 8 O -0.98 -10.09 16.32 -122.30 -2.00 -12.09 16 9 N -1.07 2.63 3.14 -153.09 -0.48 2.15 16 10 C 0.20 -0.34 1.17 3.38 0.00 -0.34 16 11 C -0.13 -0.37 4.79 -19.82 -0.10 -0.47 16 12 C 0.09 0.32 6.70 22.38 0.15 0.47 16 13 F -0.14 -0.50 12.91 44.97 0.58 0.08 16 14 C -0.16 -0.25 10.03 22.31 0.22 -0.02 16 15 C -0.09 -0.03 10.04 22.26 0.22 0.19 16 16 C -0.14 -0.35 10.04 22.27 0.22 -0.12 16 17 C -0.06 -0.26 7.23 22.26 0.16 -0.10 16 18 C -0.14 0.74 6.98 31.12 0.22 0.95 16 19 C 0.08 -0.41 5.58 31.12 0.17 -0.23 16 20 H 0.14 -1.71 5.42 -2.38 -0.01 -1.72 16 21 F -0.21 -0.19 17.41 44.97 0.78 0.60 16 22 C -0.20 0.36 6.78 31.12 0.21 0.57 16 23 C -0.09 -0.04 8.25 21.22 0.18 0.13 16 24 C -0.21 0.62 11.23 66.72 0.75 1.37 16 25 S 0.19 -0.72 20.72 -56.49 -1.17 -1.89 16 26 H 0.39 -5.28 5.74 -74.06 -0.43 -5.70 16 27 H 0.14 0.02 7.73 -2.39 -0.02 0.00 16 28 H -0.26 0.36 7.11 99.48 0.71 1.07 16 29 H -0.25 0.20 7.11 99.48 0.71 0.91 16 30 H 0.44 -2.93 7.50 -96.74 -0.73 -3.65 16 31 H 0.15 -0.33 8.06 -2.91 -0.02 -0.35 16 32 H 0.16 -0.75 8.06 -2.91 -0.02 -0.78 16 33 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 34 H 0.12 0.44 6.01 -2.91 -0.02 0.42 16 35 H 0.12 -1.25 8.10 -2.38 -0.02 -1.27 16 36 H 0.10 -0.26 6.82 -2.39 -0.02 -0.28 16 37 H 0.12 0.11 5.33 -2.39 -0.01 0.10 16 38 H 0.10 -0.26 3.77 -2.39 -0.01 -0.27 16 39 H 0.16 0.11 7.74 -2.91 -0.02 0.09 16 40 H 0.20 -1.53 8.06 -2.91 -0.02 -1.55 16 Total: 0.00 -20.69 338.72 -0.46 -21.15 By element: Atomic # 1 Polarization: -13.19 SS G_CDS: 0.04 Total: -13.15 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 2.78 Total: 2.17 kcal Atomic # 7 Polarization: 2.63 SS G_CDS: -0.48 Total: 2.15 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -4.88 Total: -20.76 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 1.36 Total: 0.68 kcal Atomic # 14 Polarization: -4.19 SS G_CDS: 2.12 Total: -2.07 kcal Atomic # 16 Polarization: 11.26 SS G_CDS: -1.42 Total: 9.84 kcal Total: -20.69 -0.46 -21.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.586 kcal (2) G-P(sol) polarization free energy of solvation -20.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds