Wall clock time and date at job start Mon Mar 8 2021 12:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86294 * 109.47242 * 2 1 4 4 C 1.50706 * 109.47119 * 239.99752 * 2 1 3 5 5 C 1.33386 * 125.20276 * 299.99881 * 4 2 1 6 6 C 1.38427 * 114.92056 * 179.97438 * 5 4 2 7 7 S 1.76194 * 122.53875 * 180.02562 * 6 5 4 8 8 O 1.42104 * 106.40144 * 199.22129 * 7 6 5 9 9 O 1.42091 * 106.40568 * 332.14257 * 7 6 5 10 10 N 1.65601 * 107.21797 * 85.68437 * 7 6 5 11 11 C 1.46497 * 120.00127 * 65.56522 * 10 7 6 12 12 C 1.50699 * 112.85289 * 284.59231 * 11 10 7 13 13 C 1.38436 * 120.01840 * 166.43103 * 12 11 10 14 14 F 1.35108 * 120.02333 * 359.97438 * 13 12 11 15 15 C 1.38477 * 119.95001 * 179.97438 * 13 12 11 16 16 C 1.38164 * 119.97828 * 0.02562 * 15 13 12 17 17 C 1.38274 * 120.02466 * 359.97438 * 16 15 13 18 18 C 1.38217 * 120.00980 * 346.15745 * 12 11 10 19 19 C 1.53779 * 113.61653 * 153.39143 * 11 10 7 20 20 C 1.53782 * 87.08490 * 270.88580 * 19 11 10 21 21 H 1.09002 * 113.61436 * 89.11228 * 20 19 11 22 22 F 1.39898 * 113.61643 * 220.02046 * 20 19 11 23 23 C 1.53785 * 113.61307 * 55.89379 * 11 10 7 24 24 C 1.33394 * 114.91888 * 0.02562 * 6 5 4 25 25 S 1.75878 * 125.20004 * 119.69937 * 4 2 1 26 26 H 0.96708 * 114.00114 * 60.00216 * 1 2 3 27 27 H 1.09000 * 109.46586 * 120.00134 * 2 1 3 28 28 H 1.48500 * 110.00268 * 59.99705 * 3 2 1 29 29 H 1.48501 * 110.00032 * 181.31717 * 3 2 1 30 30 H 1.08003 * 122.54132 * 359.96060 * 5 4 2 31 31 H 0.97002 * 119.99917 * 245.56250 * 10 7 6 32 32 H 1.08004 * 120.01230 * 179.97438 * 15 13 12 33 33 H 1.08004 * 119.99008 * 179.97438 * 16 15 13 34 34 H 1.08004 * 119.97621 * 180.02562 * 17 16 15 35 35 H 1.07997 * 119.98751 * 0.02562 * 18 12 11 36 36 H 1.09002 * 113.61591 * 25.43597 * 19 11 10 37 37 H 1.08998 * 113.61398 * 156.34012 * 19 11 10 38 38 H 1.08999 * 113.61666 * 203.66396 * 23 11 10 39 39 H 1.09001 * 113.61960 * 334.57019 * 23 11 10 40 40 H 1.07990 * 125.20146 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6739 -1.9813 -1.5436 6 6 2.2439 -2.4173 -2.7273 7 16 2.0333 -4.0586 -3.3324 8 8 3.0787 -4.2780 -4.2695 9 8 1.8248 -4.8825 -2.1936 10 7 0.6195 -4.0857 -4.1942 11 6 0.5004 -3.3092 -5.4308 12 6 0.3318 -1.8327 -5.1808 13 6 0.4857 -0.9321 -6.2208 14 9 0.7877 -1.3764 -7.4606 15 6 0.3300 0.4243 -5.9896 16 6 0.0218 0.8775 -4.7213 17 6 -0.1317 -0.0229 -3.6832 18 6 0.0179 -1.3775 -3.9140 19 6 -0.5214 -3.8863 -6.4246 20 6 0.6308 -4.7265 -7.0003 21 1 0.7550 -5.6917 -6.5093 22 9 0.6105 -4.8240 -8.3957 23 6 1.5824 -3.6399 -6.4724 24 6 2.9647 -1.5007 -3.3751 25 16 2.9406 0.0113 -2.4769 26 1 -0.3934 0.4417 -0.7651 27 1 1.7922 -0.5139 0.8900 28 1 1.5615 2.4679 1.2084 29 1 3.5346 1.7702 -0.0321 30 1 1.0668 -2.6216 -0.9207 31 1 -0.1298 -4.6157 -3.8803 32 1 0.4503 1.1278 -6.8002 33 1 -0.0993 1.9354 -4.5407 34 1 -0.3731 0.3322 -2.6921 35 1 -0.1062 -2.0801 -3.1033 36 1 -1.3022 -4.4819 -5.9517 37 1 -0.9153 -3.1485 -7.1236 38 1 1.7636 -2.8347 -7.1844 39 1 2.5000 -4.0365 -6.0380 40 1 3.4799 -1.6610 -4.3105 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17636828_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:46 Heat of formation + Delta-G solvation = -74.317376 kcal Electronic energy + Delta-G solvation = -34165.896029 eV Core-core repulsion = 29418.290743 eV Total energy + Delta-G solvation = -4747.605286 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -50.24849 -48.43723 -41.33697 -39.81185 -39.04156 -38.29274 -37.70297 -37.00804 -33.93814 -32.29455 -31.81898 -31.58200 -27.38352 -27.19310 -26.09478 -25.09363 -23.83450 -22.88771 -21.56574 -21.40850 -20.14955 -19.26007 -19.02752 -18.75920 -18.10184 -17.89003 -17.78707 -17.25510 -17.12651 -17.08467 -16.77537 -16.46374 -16.13573 -15.78483 -15.63621 -15.54481 -15.31527 -15.05446 -14.74148 -14.48638 -14.31993 -14.29164 -14.19437 -14.03560 -13.53817 -13.43364 -13.28334 -13.12932 -13.07963 -12.95808 -12.78621 -12.59847 -12.40497 -12.30131 -12.26499 -11.83717 -11.62775 -11.23988 -10.89996 -10.83418 -10.37332 -10.01278 -9.96443 -9.69353 -5.36612 -0.89965 -0.53738 -0.09634 0.02980 0.23245 0.50126 0.90067 1.02537 1.40963 1.73712 1.76314 2.31709 2.54576 2.96394 3.04175 3.07678 3.11469 3.21110 3.23358 3.34495 3.47069 3.58241 3.72998 3.75726 3.78360 3.92469 4.05433 4.12095 4.19032 4.26258 4.31588 4.53083 4.53720 4.56109 4.60982 4.69327 4.79758 4.82540 4.96767 4.97988 5.10363 5.12358 5.22251 5.26297 5.64306 5.67554 6.25719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.025 4.025 3 Si 0.651 3.349 4 C -0.229 4.229 5 C -0.041 4.041 6 C -0.686 4.686 7 S 2.707 3.293 8 O -0.945 6.945 9 O -0.947 6.947 10 N -1.093 6.093 11 C 0.196 3.804 12 C -0.132 4.132 13 C 0.113 3.887 14 F -0.126 7.126 15 C -0.151 4.151 16 C -0.081 4.081 17 C -0.125 4.125 18 C -0.076 4.076 19 C -0.144 4.144 20 C 0.074 3.926 21 H 0.112 0.888 22 F -0.201 7.201 23 C -0.216 4.216 24 C -0.075 4.075 25 S 0.167 5.833 26 H 0.375 0.625 27 H 0.128 0.872 28 H -0.231 1.231 29 H -0.237 1.237 30 H 0.156 0.844 31 H 0.426 0.574 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 5.890 -0.177 6.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.139 4.139 3 Si 0.550 3.450 4 C -0.347 4.347 5 C -0.070 4.070 6 C -0.786 4.786 7 S 2.795 3.205 8 O -0.935 6.935 9 O -0.937 6.937 10 N -0.851 5.851 11 C 0.106 3.894 12 C -0.134 4.134 13 C 0.093 3.907 14 F -0.105 7.105 15 C -0.170 4.170 16 C -0.099 4.099 17 C -0.143 4.143 18 C -0.095 4.095 19 C -0.183 4.183 20 C 0.038 3.962 21 H 0.130 0.870 22 F -0.182 7.182 23 C -0.254 4.254 24 C -0.214 4.214 25 S 0.431 5.569 26 H 0.223 0.777 27 H 0.145 0.855 28 H -0.154 1.154 29 H -0.161 1.161 30 H 0.174 0.826 31 H 0.262 0.738 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.051 7.012 0.624 7.118 hybrid contribution -1.025 -1.512 0.351 1.860 sum -2.076 5.500 0.976 5.959 Atomic orbital electron populations 1.86595 1.16539 1.81496 1.48887 1.24431 0.85158 1.09047 0.95240 0.95257 0.82452 0.77380 0.89918 1.24979 1.08009 0.98920 1.02783 1.19527 0.98592 0.94794 0.94118 1.29873 1.14584 1.26185 1.07978 1.01723 0.72688 0.73109 0.72947 1.93513 1.54417 1.84050 1.61541 1.93635 1.85003 1.64843 1.50210 1.55288 1.34552 1.60456 1.34808 1.19392 1.00295 0.86316 0.83414 1.19801 1.05648 0.94044 0.93944 1.17375 1.01515 0.92331 0.79440 1.91384 1.90137 1.89236 1.39708 1.21187 1.03152 0.93487 0.99142 1.21100 0.96725 1.00524 0.91548 1.21149 1.00857 0.92822 0.99501 1.21029 0.96554 0.96443 0.95432 1.23931 0.96951 1.00060 0.97407 1.22927 0.97323 0.99567 0.76385 0.87037 1.92829 1.97004 1.97650 1.30678 1.25202 1.00067 1.01399 0.98763 1.25858 0.97602 0.95766 1.02220 1.84348 1.46656 1.12305 1.13572 0.77663 0.85508 1.15360 1.16105 0.82633 0.73753 0.84244 0.84421 0.85514 0.84958 0.88901 0.87160 0.84953 0.85172 0.79987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.28 12.86 -35.23 -0.45 0.82 16 2 C -0.03 0.06 2.96 36.01 0.11 0.17 16 3 Si 0.65 -1.71 30.97 -169.99 -5.26 -6.97 16 4 C -0.23 0.46 5.08 -36.00 -0.18 0.28 16 5 C -0.04 0.05 7.57 -41.21 -0.31 -0.26 16 6 C -0.69 0.56 3.15 -41.21 -0.13 0.43 16 7 S 2.71 1.00 5.77 -107.50 -0.62 0.38 16 8 O -0.95 -2.41 14.17 -57.17 -0.81 -3.22 16 9 O -0.95 -3.22 17.74 -57.17 -1.01 -4.23 16 10 N -1.09 2.55 4.45 0.26 0.00 2.56 16 11 C 0.20 -0.32 1.22 -132.16 -0.16 -0.48 16 12 C -0.13 0.25 4.43 -104.56 -0.46 -0.21 16 13 C 0.11 -0.15 6.77 -39.42 -0.27 -0.42 16 14 F -0.13 -0.01 13.00 2.25 0.03 0.02 16 15 C -0.15 0.43 10.03 -39.52 -0.40 0.03 16 16 C -0.08 0.35 10.04 -39.60 -0.40 -0.05 16 17 C -0.12 0.53 8.34 -39.57 -0.33 0.20 16 18 C -0.08 0.23 5.67 -39.59 -0.22 0.00 16 19 C -0.14 0.25 7.02 -25.92 -0.18 0.06 16 20 C 0.07 0.01 5.58 -25.91 -0.14 -0.14 16 21 H 0.11 -0.14 8.14 -51.93 -0.42 -0.57 16 22 F -0.20 -0.60 17.41 2.25 0.04 -0.56 16 23 C -0.22 -0.02 6.67 -25.91 -0.17 -0.19 16 24 C -0.08 0.11 9.19 29.04 0.27 0.38 16 25 S 0.17 -0.41 19.51 -107.50 -2.10 -2.51 16 26 H 0.38 -2.35 6.93 45.56 0.32 -2.03 16 27 H 0.13 -0.23 7.96 -51.93 -0.41 -0.65 16 28 H -0.23 -0.06 7.11 56.52 0.40 0.34 16 29 H -0.24 0.05 7.11 56.52 0.40 0.45 16 30 H 0.16 -0.21 8.04 -52.48 -0.42 -0.63 16 31 H 0.43 -1.94 8.88 -34.47 -0.31 -2.25 16 32 H 0.14 -0.54 8.06 -52.48 -0.42 -0.96 16 33 H 0.14 -0.89 8.06 -52.48 -0.42 -1.31 16 34 H 0.13 -0.82 6.29 -52.48 -0.33 -1.15 16 35 H 0.13 -0.47 5.18 -52.49 -0.27 -0.74 16 36 H 0.09 -0.32 8.13 -51.93 -0.42 -0.74 16 37 H 0.11 -0.13 7.28 -51.93 -0.38 -0.51 16 38 H 0.13 0.04 4.91 -51.93 -0.25 -0.21 16 39 H 0.13 0.14 4.86 -51.93 -0.25 -0.11 16 40 H 0.18 -0.44 7.94 -52.49 -0.42 -0.86 16 LS Contribution 344.45 15.07 5.19 5.19 Total: 0.00 -9.06 344.45 -11.61 -20.67 By element: Atomic # 1 Polarization: -8.31 SS G_CDS: -3.62 Total: -11.93 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.99 Total: -0.21 kcal Atomic # 7 Polarization: 2.55 SS G_CDS: 0.00 Total: 2.56 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -2.28 Total: -6.63 kcal Atomic # 9 Polarization: -0.61 SS G_CDS: 0.07 Total: -0.55 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -5.26 Total: -6.97 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.72 Total: -2.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -9.06 -11.61 -20.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.649 kcal (2) G-P(sol) polarization free energy of solvation -9.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds