Wall clock time and date at job start Mon Mar 8 2021 12:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86294 * 109.47242 * 2 1 4 4 C 1.50706 * 109.47119 * 239.99752 * 2 1 3 5 5 C 1.33386 * 125.20276 * 299.99881 * 4 2 1 6 6 C 1.38427 * 114.92056 * 179.97438 * 5 4 2 7 7 S 1.76194 * 122.53875 * 180.02562 * 6 5 4 8 8 O 1.42104 * 106.40144 * 199.22129 * 7 6 5 9 9 O 1.42091 * 106.40568 * 332.14257 * 7 6 5 10 10 N 1.65601 * 107.21797 * 85.68437 * 7 6 5 11 11 C 1.46497 * 120.00127 * 65.56522 * 10 7 6 12 12 C 1.50699 * 112.85289 * 284.59231 * 11 10 7 13 13 C 1.38436 * 120.01840 * 166.43103 * 12 11 10 14 14 F 1.35108 * 120.02333 * 359.97438 * 13 12 11 15 15 C 1.38477 * 119.95001 * 179.97438 * 13 12 11 16 16 C 1.38164 * 119.97828 * 0.02562 * 15 13 12 17 17 C 1.38274 * 120.02466 * 359.97438 * 16 15 13 18 18 C 1.38217 * 120.00980 * 346.15745 * 12 11 10 19 19 C 1.53779 * 113.61653 * 153.39143 * 11 10 7 20 20 C 1.53782 * 87.08490 * 270.88580 * 19 11 10 21 21 H 1.09002 * 113.61436 * 89.11228 * 20 19 11 22 22 F 1.39898 * 113.61643 * 220.02046 * 20 19 11 23 23 C 1.53785 * 113.61307 * 55.89379 * 11 10 7 24 24 C 1.33394 * 114.91888 * 0.02562 * 6 5 4 25 25 S 1.75878 * 125.20004 * 119.69937 * 4 2 1 26 26 H 0.96708 * 114.00114 * 60.00216 * 1 2 3 27 27 H 1.09000 * 109.46586 * 120.00134 * 2 1 3 28 28 H 1.48500 * 110.00268 * 59.99705 * 3 2 1 29 29 H 1.48501 * 110.00032 * 181.31717 * 3 2 1 30 30 H 1.08003 * 122.54132 * 359.96060 * 5 4 2 31 31 H 0.97002 * 119.99917 * 245.56250 * 10 7 6 32 32 H 1.08004 * 120.01230 * 179.97438 * 15 13 12 33 33 H 1.08004 * 119.99008 * 179.97438 * 16 15 13 34 34 H 1.08004 * 119.97621 * 180.02562 * 17 16 15 35 35 H 1.07997 * 119.98751 * 0.02562 * 18 12 11 36 36 H 1.09002 * 113.61591 * 25.43597 * 19 11 10 37 37 H 1.08998 * 113.61398 * 156.34012 * 19 11 10 38 38 H 1.08999 * 113.61666 * 203.66396 * 23 11 10 39 39 H 1.09001 * 113.61960 * 334.57019 * 23 11 10 40 40 H 1.07990 * 125.20146 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6739 -1.9813 -1.5436 6 6 2.2439 -2.4173 -2.7273 7 16 2.0333 -4.0586 -3.3324 8 8 3.0787 -4.2780 -4.2695 9 8 1.8248 -4.8825 -2.1936 10 7 0.6195 -4.0857 -4.1942 11 6 0.5004 -3.3092 -5.4308 12 6 0.3318 -1.8327 -5.1808 13 6 0.4857 -0.9321 -6.2208 14 9 0.7877 -1.3764 -7.4606 15 6 0.3300 0.4243 -5.9896 16 6 0.0218 0.8775 -4.7213 17 6 -0.1317 -0.0229 -3.6832 18 6 0.0179 -1.3775 -3.9140 19 6 -0.5214 -3.8863 -6.4246 20 6 0.6308 -4.7265 -7.0003 21 1 0.7550 -5.6917 -6.5093 22 9 0.6105 -4.8240 -8.3957 23 6 1.5824 -3.6399 -6.4724 24 6 2.9647 -1.5007 -3.3751 25 16 2.9406 0.0113 -2.4769 26 1 -0.3934 0.4417 -0.7651 27 1 1.7922 -0.5139 0.8900 28 1 1.5615 2.4679 1.2084 29 1 3.5346 1.7702 -0.0321 30 1 1.0668 -2.6216 -0.9207 31 1 -0.1298 -4.6157 -3.8803 32 1 0.4503 1.1278 -6.8002 33 1 -0.0993 1.9354 -4.5407 34 1 -0.3731 0.3322 -2.6921 35 1 -0.1062 -2.0801 -3.1033 36 1 -1.3022 -4.4819 -5.9517 37 1 -0.9153 -3.1485 -7.1236 38 1 1.7636 -2.8347 -7.1844 39 1 2.5000 -4.0365 -6.0380 40 1 3.4799 -1.6610 -4.3105 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17636828_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:45 Heat of formation + Delta-G solvation = -74.399403 kcal Electronic energy + Delta-G solvation = -34165.899586 eV Core-core repulsion = 29418.290743 eV Total energy + Delta-G solvation = -4747.608843 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.045 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.12232 -48.57072 -41.18043 -39.68058 -38.84174 -38.39277 -37.51446 -37.13678 -33.85025 -32.06925 -31.64351 -31.30143 -27.25107 -27.11496 -25.94361 -24.97926 -23.58585 -22.70453 -21.47568 -21.33000 -20.08719 -19.12468 -18.92461 -18.67926 -17.93497 -17.77691 -17.68969 -17.09651 -17.07006 -17.01535 -16.68730 -16.29204 -16.06623 -15.81608 -15.53557 -15.43186 -15.08402 -14.93489 -14.59835 -14.35141 -14.27519 -14.20963 -14.10217 -13.91322 -13.54806 -13.40884 -13.29682 -13.12029 -12.93391 -12.78727 -12.66839 -12.54265 -12.29925 -12.21283 -12.08226 -11.73013 -11.54284 -11.22464 -10.78735 -10.65126 -10.20568 -9.79690 -9.75944 -9.46703 -5.18241 -0.89245 -0.42515 0.17016 0.30994 0.37511 0.64382 1.00224 1.19973 1.56666 1.82108 1.89668 2.50778 2.63147 3.04523 3.17924 3.22636 3.29316 3.32241 3.40201 3.44576 3.63354 3.79616 3.83231 3.92322 3.94294 4.21556 4.23319 4.34170 4.44023 4.45576 4.48332 4.62964 4.66514 4.67105 4.77355 4.93797 4.96030 5.07255 5.08849 5.12762 5.19476 5.34883 5.41926 5.54184 5.88191 5.97312 6.71111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.025 4.025 3 Si 0.728 3.272 4 C -0.227 4.227 5 C -0.049 4.049 6 C -0.687 4.687 7 S 2.719 3.281 8 O -0.973 6.973 9 O -0.980 6.980 10 N -1.081 6.081 11 C 0.205 3.795 12 C -0.138 4.138 13 C 0.092 3.908 14 F -0.142 7.142 15 C -0.158 4.158 16 C -0.075 4.075 17 C -0.124 4.124 18 C -0.083 4.083 19 C -0.136 4.136 20 C 0.060 3.940 21 H 0.123 0.877 22 F -0.220 7.220 23 C -0.223 4.223 24 C -0.084 4.084 25 S 0.198 5.802 26 H 0.393 0.607 27 H 0.122 0.878 28 H -0.272 1.272 29 H -0.269 1.269 30 H 0.156 0.844 31 H 0.437 0.563 32 H 0.146 0.854 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.137 0.863 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 7.395 0.569 8.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.138 4.138 3 Si 0.631 3.369 4 C -0.345 4.345 5 C -0.078 4.078 6 C -0.789 4.789 7 S 2.809 3.191 8 O -0.963 6.963 9 O -0.971 6.971 10 N -0.842 5.842 11 C 0.115 3.885 12 C -0.141 4.141 13 C 0.072 3.928 14 F -0.120 7.120 15 C -0.177 4.177 16 C -0.093 4.093 17 C -0.142 4.142 18 C -0.102 4.102 19 C -0.175 4.175 20 C 0.024 3.976 21 H 0.141 0.859 22 F -0.201 7.201 23 C -0.261 4.261 24 C -0.224 4.224 25 S 0.463 5.537 26 H 0.244 0.756 27 H 0.139 0.861 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.173 0.827 31 H 0.276 0.724 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.074 8.482 1.345 8.835 hybrid contribution -0.690 -1.888 0.157 2.016 sum -2.764 6.595 1.502 7.306 Atomic orbital electron populations 1.86572 1.16163 1.81909 1.50193 1.24459 0.85553 1.08999 0.94828 0.94435 0.79378 0.75296 0.87805 1.25050 1.07730 0.98747 1.02937 1.19538 0.99013 0.95182 0.94030 1.29593 1.15517 1.25302 1.08479 1.01046 0.72615 0.73261 0.72171 1.93485 1.55844 1.84819 1.62109 1.93589 1.85568 1.66456 1.51448 1.54972 1.34210 1.60654 1.34322 1.19259 0.99241 0.86988 0.83022 1.19740 1.06534 0.93403 0.94430 1.17645 1.02847 0.93224 0.79062 1.91343 1.90486 1.89499 1.40690 1.21399 1.03095 0.92925 1.00232 1.21435 0.95257 1.01919 0.90659 1.21504 0.99701 0.92216 1.00809 1.21184 0.96609 0.97399 0.94974 1.23882 0.96901 0.99703 0.97046 1.23245 0.98536 1.00428 0.75342 0.85930 1.92783 1.97174 1.97758 1.32390 1.25189 1.00133 1.01338 0.99476 1.26022 0.97384 0.96394 1.02561 1.84254 1.45847 1.11072 1.12574 0.75610 0.86082 1.19708 1.19527 0.82672 0.72378 0.83608 0.81713 0.82901 0.84523 0.86798 0.87642 0.85495 0.86372 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.60 12.86 -148.98 -1.92 1.69 16 2 C -0.03 0.15 2.96 71.24 0.21 0.36 16 3 Si 0.73 -4.52 30.97 68.60 2.12 -2.39 16 4 C -0.23 1.17 5.08 24.59 0.12 1.30 16 5 C -0.05 0.14 7.57 21.22 0.16 0.30 16 6 C -0.69 1.04 3.15 21.22 0.07 1.10 16 7 S 2.72 4.80 5.77 -56.49 -0.33 4.47 16 8 O -0.97 -6.60 14.17 -128.00 -1.81 -8.41 16 9 O -0.98 -7.80 17.74 -128.00 -2.27 -10.07 16 10 N -1.08 4.49 4.45 -153.09 -0.68 3.81 16 11 C 0.21 -0.54 1.22 3.38 0.00 -0.54 16 12 C -0.14 0.53 4.43 -19.82 -0.09 0.44 16 13 C 0.09 -0.22 6.77 22.37 0.15 -0.06 16 14 F -0.14 -0.24 13.00 44.97 0.58 0.35 16 15 C -0.16 1.00 10.03 22.31 0.22 1.22 16 16 C -0.07 0.80 10.04 22.26 0.22 1.03 16 17 C -0.12 1.31 8.34 22.28 0.19 1.50 16 18 C -0.08 0.57 5.67 22.26 0.13 0.70 16 19 C -0.14 0.40 7.02 31.12 0.22 0.62 16 20 C 0.06 0.09 5.58 31.12 0.17 0.26 16 21 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 22 F -0.22 -1.71 17.41 44.97 0.78 -0.92 16 23 C -0.22 -0.42 6.67 31.12 0.21 -0.21 16 24 C -0.08 0.26 9.19 66.72 0.61 0.87 16 25 S 0.20 -1.20 19.51 -56.49 -1.10 -2.30 16 26 H 0.39 -6.02 6.93 -74.05 -0.51 -6.53 16 27 H 0.12 -0.54 7.96 -2.39 -0.02 -0.55 16 28 H -0.27 -0.17 7.11 99.48 0.71 0.53 16 29 H -0.27 0.24 7.11 99.48 0.71 0.94 16 30 H 0.16 -0.45 8.04 -2.91 -0.02 -0.47 16 31 H 0.44 -3.93 8.88 -96.74 -0.86 -4.79 16 32 H 0.15 -1.20 8.06 -2.91 -0.02 -1.22 16 33 H 0.17 -2.68 8.06 -2.91 -0.02 -2.70 16 34 H 0.15 -2.49 6.29 -2.91 -0.02 -2.51 16 35 H 0.14 -1.10 5.18 -2.91 -0.02 -1.11 16 36 H 0.11 -0.85 8.13 -2.39 -0.02 -0.87 16 37 H 0.11 -0.16 7.28 -2.39 -0.02 -0.18 16 38 H 0.13 0.37 4.91 -2.39 -0.01 0.36 16 39 H 0.12 0.52 4.86 -2.39 -0.01 0.50 16 40 H 0.19 -0.78 7.94 -2.92 -0.02 -0.80 16 Total: 0.00 -22.31 344.45 -2.20 -24.51 By element: Atomic # 1 Polarization: -19.42 SS G_CDS: -0.18 Total: -19.60 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 2.60 Total: 8.88 kcal Atomic # 7 Polarization: 4.49 SS G_CDS: -0.68 Total: 3.81 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -6.00 Total: -16.79 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 1.37 Total: -0.58 kcal Atomic # 14 Polarization: -4.52 SS G_CDS: 2.12 Total: -2.39 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.43 Total: 2.16 kcal Total: -22.31 -2.20 -24.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.894 kcal (2) G-P(sol) polarization free energy of solvation -22.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds