Wall clock time and date at job start Mon Mar 8 2021 12:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33386 * 125.19919 * 2 1 4 4 C 1.50703 * 122.54464 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.46873 * 319.66523 * 4 3 2 6 6 Si 1.86301 * 109.46804 * 79.65909 * 4 3 2 7 7 C 1.38429 * 114.91963 * 179.97438 * 3 2 1 8 8 S 1.76196 * 122.53967 * 179.97438 * 7 3 2 9 9 O 1.42097 * 106.40474 * 14.69932 * 8 7 3 10 10 O 1.42098 * 106.40353 * 147.62003 * 8 7 3 11 11 N 1.65598 * 107.21743 * 261.15753 * 8 7 3 12 12 C 1.46508 * 119.99907 * 67.07673 * 11 8 7 13 13 C 1.50699 * 112.84777 * 70.32340 * 12 11 8 14 14 C 1.38444 * 120.01307 * 193.55382 * 13 12 11 15 15 F 1.35096 * 120.02288 * 359.97438 * 14 13 12 16 16 C 1.38478 * 119.94911 * 180.02562 * 14 13 12 17 17 C 1.38182 * 119.97670 * 359.97438 * 16 14 13 18 18 C 1.38267 * 120.02036 * 0.02562 * 17 16 14 19 19 C 1.38220 * 120.05537 * 359.72613 * 18 17 16 20 20 C 1.53777 * 113.61487 * 299.12552 * 12 11 8 21 21 C 1.54046 * 86.98791 * 270.83706 * 20 12 11 22 22 H 1.09007 * 113.61227 * 89.11072 * 21 20 12 23 23 F 1.39902 * 113.69716 * 220.01130 * 21 20 12 24 24 C 1.53777 * 87.07635 * 334.56987 * 21 20 12 25 25 C 1.33391 * 114.91813 * 359.97438 * 7 3 2 26 26 C 1.50699 * 125.19957 * 179.74015 * 25 7 3 27 27 S 1.75873 * 109.59458 * 0.02562 * 25 7 3 28 28 H 1.09002 * 109.46949 * 85.41911 * 1 2 3 29 29 H 1.09004 * 109.46662 * 205.41749 * 1 2 3 30 30 H 1.08997 * 109.47125 * 325.41598 * 1 2 3 31 31 H 1.08989 * 109.47283 * 199.66220 * 4 3 2 32 32 H 0.96702 * 113.99863 * 303.07101 * 5 4 3 33 33 H 1.48492 * 110.00117 * 302.85069 * 6 4 3 34 34 H 1.48500 * 109.99905 * 64.16926 * 6 4 3 35 35 H 0.97002 * 120.00268 * 247.07550 * 11 8 7 36 36 H 1.07999 * 120.01462 * 179.97438 * 16 14 13 37 37 H 1.07996 * 119.98660 * 179.97438 * 17 16 14 38 38 H 1.08007 * 119.96965 * 180.02562 * 18 17 16 39 39 H 1.07997 * 119.98996 * 180.27295 * 19 18 17 40 40 H 1.09001 * 113.61291 * 25.43442 * 20 12 11 41 41 H 1.09008 * 113.61357 * 156.33229 * 20 12 11 42 42 H 1.09003 * 113.61888 * 270.88034 * 24 21 20 43 43 H 1.09000 * 113.61904 * 139.97888 * 24 21 20 44 44 H 1.08997 * 109.47533 * 89.99554 * 26 25 7 45 45 H 1.09004 * 109.46836 * 210.00411 * 26 25 7 46 46 H 1.09003 * 109.47005 * 329.99515 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 -0.0006 5 8 0.5745 2.5363 -0.8730 6 14 1.1775 2.9404 1.7271 7 6 3.6380 0.8429 0.0006 8 16 4.8355 2.1353 0.0000 9 8 4.1411 3.3261 0.3449 10 8 5.9525 1.6477 0.7307 11 7 5.3475 2.3285 -1.5630 12 6 4.4227 2.8371 -2.5791 13 6 4.0885 4.2942 -2.3894 14 6 3.0278 4.8569 -3.0786 15 9 2.2921 4.1001 -3.9219 16 6 2.7222 6.1961 -2.9036 17 6 3.4758 6.9693 -2.0412 18 6 4.5349 6.4062 -1.3535 19 6 4.8377 5.0684 -1.5234 20 6 3.1885 1.9445 -2.7908 21 6 4.0171 1.1886 -3.8467 22 1 4.5944 0.3595 -3.4372 23 9 3.2863 0.8318 -4.9851 24 6 4.8322 2.4812 -4.0181 25 6 3.9751 -0.4477 0.0016 26 6 5.3860 -0.9769 -0.0033 27 16 2.5210 -1.4371 0.0011 28 1 -0.3633 0.0821 -1.0244 29 1 -0.3633 -0.9283 0.4411 30 1 -0.3633 0.8460 0.5833 31 1 2.4632 3.1874 -0.3462 32 1 0.7659 2.2648 -1.7812 33 1 0.1947 1.9502 2.2358 34 1 2.3605 2.9884 2.6234 35 1 6.2597 2.1050 -1.8057 36 1 1.8952 6.6362 -3.4410 37 1 3.2378 8.0139 -1.9050 38 1 5.1231 7.0112 -0.6793 39 1 5.6624 4.6286 -0.9823 40 1 2.9321 1.3404 -1.9205 41 1 2.3318 2.4753 -3.2061 42 1 4.4242 3.1586 -4.7683 43 1 5.9021 2.3103 -4.1380 44 1 5.7305 -1.1026 1.0232 45 1 5.4115 -1.9388 -0.5155 46 1 6.0367 -0.2722 -0.5212 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17636828_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:52 Heat of formation + Delta-G solvation = -78.666442 kcal Electronic energy + Delta-G solvation = -40181.953503 eV Core-core repulsion = 35123.084390 eV Total energy + Delta-G solvation = -5058.869114 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.076 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -50.16320 -48.58852 -41.42089 -40.39396 -39.03524 -38.59872 -37.11004 -37.06760 -34.20112 -33.99597 -32.07001 -31.38871 -31.04114 -28.01359 -27.43958 -26.09198 -25.91950 -23.72941 -23.29693 -22.84292 -21.54608 -20.79412 -20.11234 -19.17195 -18.87538 -18.62487 -18.17545 -18.05096 -17.38794 -17.30566 -17.13669 -16.87792 -16.63171 -16.23208 -16.11915 -15.88309 -15.63654 -15.44285 -15.14588 -15.05736 -14.89314 -14.66214 -14.37417 -14.31931 -14.30087 -14.13585 -13.88614 -13.74916 -13.51303 -13.40210 -13.35545 -13.21586 -13.11488 -12.93972 -12.87363 -12.77168 -12.65127 -12.46211 -12.27799 -12.01284 -11.77260 -11.71653 -11.52900 -11.39260 -10.96394 -10.76693 -10.07003 -9.88720 -9.63986 -9.48564 -4.75828 -0.95597 -0.54307 0.09312 0.26498 0.26674 0.61868 0.75513 1.57116 1.75855 1.88177 2.07151 2.41116 2.53187 2.94224 2.96288 3.08795 3.11899 3.18077 3.25213 3.28725 3.54076 3.61718 3.69720 3.79874 3.81200 3.93793 4.02562 4.06180 4.16565 4.21467 4.25201 4.30296 4.35171 4.39336 4.43219 4.48457 4.55705 4.61074 4.62859 4.70997 4.74132 4.82555 4.93693 5.01301 5.02553 5.07791 5.17664 5.21084 5.30622 5.45676 5.57724 5.87795 6.55029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.167 4.167 3 C -0.081 4.081 4 C -0.091 4.091 5 O -0.530 6.530 6 Si 0.757 3.243 7 C -0.689 4.689 8 S 2.700 3.300 9 O -0.930 6.930 10 O -0.946 6.946 11 N -1.095 6.095 12 C 0.203 3.797 13 C -0.127 4.127 14 C 0.110 3.890 15 F -0.130 7.130 16 C -0.150 4.150 17 C -0.082 4.082 18 C -0.124 4.124 19 C -0.048 4.048 20 C -0.220 4.220 21 C 0.077 3.923 22 H 0.109 0.891 23 F -0.198 7.198 24 C -0.144 4.144 25 C -0.055 4.055 26 C -0.110 4.110 27 S 0.161 5.839 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.358 0.642 33 H -0.257 1.257 34 H -0.251 1.251 35 H 0.425 0.575 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 1.076 -1.949 2.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.285 4.285 3 C -0.091 4.091 4 C -0.201 4.201 5 O -0.335 6.335 6 Si 0.655 3.345 7 C -0.789 4.789 8 S 2.788 3.212 9 O -0.920 6.920 10 O -0.937 6.937 11 N -0.854 5.854 12 C 0.114 3.886 13 C -0.130 4.130 14 C 0.091 3.909 15 F -0.109 7.109 16 C -0.169 4.169 17 C -0.100 4.100 18 C -0.142 4.142 19 C -0.066 4.066 20 C -0.258 4.258 21 C 0.041 3.959 22 H 0.127 0.873 23 F -0.179 7.179 24 C -0.184 4.184 25 C -0.176 4.176 26 C -0.168 4.168 27 S 0.428 5.572 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.205 0.795 33 H -0.182 1.182 34 H -0.175 1.175 35 H 0.261 0.739 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.158 0.842 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.105 0.895 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.869 -0.124 0.140 0.889 hybrid contribution 1.014 -0.642 -1.600 2.000 sum 1.883 -0.765 -1.460 2.503 Atomic orbital electron populations 1.20493 0.86412 1.03359 1.03932 1.24520 1.00843 0.94429 1.08695 1.18622 0.90011 0.97537 1.02904 1.25896 0.93812 0.92385 1.08018 1.86766 1.33644 1.90246 1.22833 0.93078 0.81872 0.88398 0.71138 1.29482 1.11936 1.13437 1.24020 1.01867 0.73334 0.73960 0.72020 1.93528 1.73699 1.43685 1.81081 1.93639 1.50248 1.81633 1.68134 1.55385 1.21667 1.80819 1.27503 1.19303 0.90567 0.89363 0.89414 1.19581 0.97561 0.94782 1.01066 1.17292 0.91631 0.89637 0.92372 1.91336 1.75920 1.74732 1.68884 1.21131 1.02201 0.91985 1.01540 1.21105 0.94126 1.00204 0.94598 1.21212 0.98043 0.94985 0.99944 1.20671 0.97933 0.93421 0.94624 1.25271 0.99417 0.99294 1.01829 1.22924 0.92914 0.96642 0.83451 0.87345 1.92843 1.78867 1.93542 1.52628 1.23932 1.02366 0.97311 0.94749 1.24540 1.00884 0.95076 0.97115 1.20849 0.88036 1.02443 1.05505 1.84479 0.94928 1.08647 1.69159 0.89728 0.91600 0.89155 0.86405 0.79469 1.18239 1.17498 0.73893 0.84324 0.84691 0.85030 0.86092 0.88031 0.84240 0.86828 0.88740 0.87824 0.89467 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.05 8.82 36.01 0.32 0.27 16 2 C -0.17 -0.25 6.21 -36.00 -0.22 -0.47 16 3 C -0.08 -0.15 2.13 -106.25 -0.23 -0.38 16 4 C -0.09 -0.17 1.48 36.01 0.05 -0.12 16 5 O -0.53 -0.51 10.56 -35.23 -0.37 -0.89 16 6 Si 0.76 1.95 30.82 -169.99 -5.24 -3.29 16 7 C -0.69 -1.01 4.11 -41.20 -0.17 -1.18 16 8 S 2.70 3.46 4.81 -107.50 -0.52 2.94 16 9 O -0.93 -2.49 9.94 -57.17 -0.57 -3.06 16 10 O -0.95 -3.15 15.73 -57.17 -0.90 -4.05 16 11 N -1.10 2.09 4.55 0.26 0.00 2.09 16 12 C 0.20 -0.25 1.17 -132.16 -0.15 -0.40 16 13 C -0.13 0.00 4.41 -104.55 -0.46 -0.46 16 14 C 0.11 0.03 6.76 -39.42 -0.27 -0.23 16 15 F -0.13 -0.08 13.00 2.25 0.03 -0.05 16 16 C -0.15 0.07 10.03 -39.51 -0.40 -0.32 16 17 C -0.08 0.09 10.04 -39.59 -0.40 -0.31 16 18 C -0.12 0.07 10.04 -39.58 -0.40 -0.33 16 19 C -0.05 -0.01 7.35 -39.59 -0.29 -0.30 16 20 C -0.22 0.16 5.28 -25.78 -0.14 0.02 16 21 C 0.08 -0.08 5.58 -25.78 -0.14 -0.22 16 22 H 0.11 -0.29 8.14 -51.92 -0.42 -0.71 16 23 F -0.20 -0.38 17.41 2.25 0.04 -0.34 16 24 C -0.14 0.29 7.01 -25.92 -0.18 0.11 16 25 C -0.06 -0.03 6.49 -36.00 -0.23 -0.26 16 26 C -0.11 0.15 9.13 36.01 0.33 0.48 16 27 S 0.16 0.06 23.31 -107.50 -2.51 -2.44 16 28 H 0.08 -0.05 8.11 -51.93 -0.42 -0.47 16 29 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 30 H 0.09 0.14 5.12 -51.93 -0.27 -0.13 16 31 H 0.12 0.21 4.31 -51.94 -0.22 -0.01 16 32 H 0.36 -0.26 7.38 45.56 0.34 0.07 16 33 H -0.26 -0.98 6.42 56.52 0.36 -0.62 16 34 H -0.25 -1.20 7.11 56.52 0.40 -0.80 16 35 H 0.42 -1.92 8.83 -34.47 -0.30 -2.22 16 36 H 0.14 -0.27 8.06 -52.49 -0.42 -0.69 16 37 H 0.14 -0.43 8.06 -52.49 -0.42 -0.86 16 38 H 0.13 -0.29 8.06 -52.48 -0.42 -0.71 16 39 H 0.12 -0.08 6.51 -52.49 -0.34 -0.42 16 40 H 0.10 -0.05 2.72 -51.93 -0.14 -0.19 16 41 H 0.14 -0.06 4.16 -51.92 -0.22 -0.28 16 42 H 0.11 -0.15 7.28 -51.93 -0.38 -0.53 16 43 H 0.09 -0.36 8.10 -51.93 -0.42 -0.79 16 44 H 0.10 -0.11 8.14 -51.93 -0.42 -0.54 16 45 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 46 H 0.08 -0.19 6.65 -51.93 -0.35 -0.54 16 LS Contribution 375.63 15.07 5.66 5.66 Total: 0.00 -6.84 375.63 -12.27 -19.11 By element: Atomic # 1 Polarization: -6.66 SS G_CDS: -4.92 Total: -11.58 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.98 Total: -4.11 kcal Atomic # 7 Polarization: 2.09 SS G_CDS: 0.00 Total: 2.09 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -1.84 Total: -7.99 kcal Atomic # 9 Polarization: -0.46 SS G_CDS: 0.07 Total: -0.39 kcal Atomic # 14 Polarization: 1.95 SS G_CDS: -5.24 Total: -3.29 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -3.02 Total: 0.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -6.84 -12.27 -19.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.557 kcal (2) G-P(sol) polarization free energy of solvation -6.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds