Wall clock time and date at job start Mon Mar 8 2021 12:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33386 * 125.19919 * 2 1 4 4 C 1.50703 * 122.54464 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.46873 * 319.66523 * 4 3 2 6 6 Si 1.86301 * 109.46804 * 79.65909 * 4 3 2 7 7 C 1.38429 * 114.91963 * 179.97438 * 3 2 1 8 8 S 1.76196 * 122.53967 * 179.97438 * 7 3 2 9 9 O 1.42097 * 106.40474 * 14.69932 * 8 7 3 10 10 O 1.42098 * 106.40353 * 147.62003 * 8 7 3 11 11 N 1.65598 * 107.21743 * 261.15753 * 8 7 3 12 12 C 1.46508 * 119.99907 * 67.07673 * 11 8 7 13 13 C 1.50699 * 112.84777 * 70.32340 * 12 11 8 14 14 C 1.38444 * 120.01307 * 193.55382 * 13 12 11 15 15 F 1.35096 * 120.02288 * 359.97438 * 14 13 12 16 16 C 1.38478 * 119.94911 * 180.02562 * 14 13 12 17 17 C 1.38182 * 119.97670 * 359.97438 * 16 14 13 18 18 C 1.38267 * 120.02036 * 0.02562 * 17 16 14 19 19 C 1.38220 * 120.05537 * 359.72613 * 18 17 16 20 20 C 1.53777 * 113.61487 * 299.12552 * 12 11 8 21 21 C 1.54046 * 86.98791 * 270.83706 * 20 12 11 22 22 H 1.09007 * 113.61227 * 89.11072 * 21 20 12 23 23 F 1.39902 * 113.69716 * 220.01130 * 21 20 12 24 24 C 1.53777 * 87.07635 * 334.56987 * 21 20 12 25 25 C 1.33391 * 114.91813 * 359.97438 * 7 3 2 26 26 C 1.50699 * 125.19957 * 179.74015 * 25 7 3 27 27 S 1.75873 * 109.59458 * 0.02562 * 25 7 3 28 28 H 1.09002 * 109.46949 * 85.41911 * 1 2 3 29 29 H 1.09004 * 109.46662 * 205.41749 * 1 2 3 30 30 H 1.08997 * 109.47125 * 325.41598 * 1 2 3 31 31 H 1.08989 * 109.47283 * 199.66220 * 4 3 2 32 32 H 0.96702 * 113.99863 * 303.07101 * 5 4 3 33 33 H 1.48492 * 110.00117 * 302.85069 * 6 4 3 34 34 H 1.48500 * 109.99905 * 64.16926 * 6 4 3 35 35 H 0.97002 * 120.00268 * 247.07550 * 11 8 7 36 36 H 1.07999 * 120.01462 * 179.97438 * 16 14 13 37 37 H 1.07996 * 119.98660 * 179.97438 * 17 16 14 38 38 H 1.08007 * 119.96965 * 180.02562 * 18 17 16 39 39 H 1.07997 * 119.98996 * 180.27295 * 19 18 17 40 40 H 1.09001 * 113.61291 * 25.43442 * 20 12 11 41 41 H 1.09008 * 113.61357 * 156.33229 * 20 12 11 42 42 H 1.09003 * 113.61888 * 270.88034 * 24 21 20 43 43 H 1.09000 * 113.61904 * 139.97888 * 24 21 20 44 44 H 1.08997 * 109.47533 * 89.99554 * 26 25 7 45 45 H 1.09004 * 109.46836 * 210.00411 * 26 25 7 46 46 H 1.09003 * 109.47005 * 329.99515 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 -0.0006 5 8 0.5745 2.5363 -0.8730 6 14 1.1775 2.9404 1.7271 7 6 3.6380 0.8429 0.0006 8 16 4.8355 2.1353 0.0000 9 8 4.1411 3.3261 0.3449 10 8 5.9525 1.6477 0.7307 11 7 5.3475 2.3285 -1.5630 12 6 4.4227 2.8371 -2.5791 13 6 4.0885 4.2942 -2.3894 14 6 3.0278 4.8569 -3.0786 15 9 2.2921 4.1001 -3.9219 16 6 2.7222 6.1961 -2.9036 17 6 3.4758 6.9693 -2.0412 18 6 4.5349 6.4062 -1.3535 19 6 4.8377 5.0684 -1.5234 20 6 3.1885 1.9445 -2.7908 21 6 4.0171 1.1886 -3.8467 22 1 4.5944 0.3595 -3.4372 23 9 3.2863 0.8318 -4.9851 24 6 4.8322 2.4812 -4.0181 25 6 3.9751 -0.4477 0.0016 26 6 5.3860 -0.9769 -0.0033 27 16 2.5210 -1.4371 0.0011 28 1 -0.3633 0.0821 -1.0244 29 1 -0.3633 -0.9283 0.4411 30 1 -0.3633 0.8460 0.5833 31 1 2.4632 3.1874 -0.3462 32 1 0.7659 2.2648 -1.7812 33 1 0.1947 1.9502 2.2358 34 1 2.3605 2.9884 2.6234 35 1 6.2597 2.1050 -1.8057 36 1 1.8952 6.6362 -3.4410 37 1 3.2378 8.0139 -1.9050 38 1 5.1231 7.0112 -0.6793 39 1 5.6624 4.6286 -0.9823 40 1 2.9321 1.3404 -1.9205 41 1 2.3318 2.4753 -3.2061 42 1 4.4242 3.1586 -4.7683 43 1 5.9021 2.3103 -4.1380 44 1 5.7305 -1.1026 1.0232 45 1 5.4115 -1.9388 -0.5155 46 1 6.0367 -0.2722 -0.5212 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17636828_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:50 Heat of formation + Delta-G solvation = -74.206357 kcal Electronic energy + Delta-G solvation = -40181.760100 eV Core-core repulsion = 35123.084390 eV Total energy + Delta-G solvation = -5058.675710 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.076 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.14133 -48.61132 -41.37015 -40.42352 -38.94707 -38.72602 -37.24693 -37.15547 -34.20980 -33.92439 -31.98525 -31.30704 -31.04200 -28.05899 -27.33014 -26.01300 -25.95533 -23.66809 -23.32467 -22.76445 -21.48787 -20.83250 -20.14936 -19.22222 -18.87891 -18.61449 -18.22941 -17.98939 -17.34041 -17.29405 -17.09653 -16.88169 -16.64980 -16.31329 -16.15755 -15.87041 -15.58390 -15.51981 -15.19727 -15.00609 -14.91918 -14.60838 -14.37063 -14.27551 -14.26538 -14.13115 -14.04924 -13.75337 -13.52272 -13.45953 -13.35090 -13.28377 -13.08474 -12.98912 -12.82476 -12.73804 -12.72200 -12.42581 -12.20619 -12.08468 -11.97680 -11.67742 -11.51205 -11.42735 -10.90601 -10.84565 -10.10466 -9.81470 -9.57539 -9.54862 -5.00879 -1.01330 -0.58772 0.16852 0.23763 0.32831 0.55756 0.65413 1.40277 1.60382 1.72677 1.82284 2.36902 2.59897 2.97192 3.05264 3.12792 3.21350 3.24835 3.30466 3.35015 3.54614 3.69139 3.72988 3.78770 3.88982 3.91955 4.05240 4.18067 4.20407 4.27395 4.38829 4.41657 4.45864 4.49551 4.53420 4.59415 4.60439 4.64119 4.67624 4.76183 4.77534 4.93298 4.96575 5.01380 5.09964 5.12116 5.14505 5.28503 5.40459 5.54437 5.80435 5.97121 6.53470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.180 4.180 3 C -0.089 4.089 4 C -0.087 4.087 5 O -0.531 6.531 6 Si 0.787 3.213 7 C -0.703 4.703 8 S 2.709 3.291 9 O -0.948 6.948 10 O -0.969 6.969 11 N -1.080 6.080 12 C 0.206 3.794 13 C -0.132 4.132 14 C 0.096 3.904 15 F -0.135 7.135 16 C -0.157 4.157 17 C -0.085 4.085 18 C -0.133 4.133 19 C -0.064 4.064 20 C -0.224 4.224 21 C 0.072 3.928 22 H 0.128 0.872 23 F -0.216 7.216 24 C -0.138 4.138 25 C -0.053 4.053 26 C -0.119 4.119 27 S 0.180 5.820 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.366 0.634 33 H -0.275 1.275 34 H -0.284 1.284 35 H 0.438 0.562 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.145 0.855 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.135 0.865 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 0.724 -2.773 3.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.298 4.298 3 C -0.099 4.099 4 C -0.198 4.198 5 O -0.337 6.337 6 Si 0.689 3.311 7 C -0.802 4.802 8 S 2.797 3.203 9 O -0.938 6.938 10 O -0.959 6.959 11 N -0.842 5.842 12 C 0.116 3.884 13 C -0.134 4.134 14 C 0.076 3.924 15 F -0.114 7.114 16 C -0.176 4.176 17 C -0.102 4.102 18 C -0.151 4.151 19 C -0.082 4.082 20 C -0.262 4.262 21 C 0.036 3.964 22 H 0.145 0.855 23 F -0.197 7.197 24 C -0.177 4.177 25 C -0.174 4.174 26 C -0.177 4.177 27 S 0.446 5.554 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.137 0.863 32 H 0.215 0.785 33 H -0.202 1.202 34 H -0.211 1.211 35 H 0.277 0.723 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.163 0.837 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.153 0.847 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.128 0.872 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.513 -0.467 -0.689 1.726 hybrid contribution 0.816 -0.556 -1.316 1.645 sum 2.328 -1.023 -2.005 3.238 Atomic orbital electron populations 1.20517 0.86048 1.03230 1.04486 1.24715 1.01416 0.95016 1.08689 1.18650 0.90379 0.97459 1.03428 1.25743 0.93906 0.92762 1.07440 1.86728 1.33303 1.90319 1.23363 0.92722 0.79598 0.87717 0.71015 1.29484 1.11735 1.13907 1.25113 1.01411 0.72815 0.73559 0.72474 1.93502 1.73982 1.44486 1.81805 1.93607 1.51073 1.81939 1.69310 1.55051 1.22301 1.80492 1.26316 1.19268 0.90546 0.88778 0.89801 1.19678 0.97478 0.95307 1.00956 1.17468 0.92016 0.90072 0.92805 1.91323 1.76067 1.74914 1.69082 1.21377 1.02628 0.91879 1.01722 1.21375 0.93660 1.01190 0.94014 1.21488 0.98381 0.95046 1.00149 1.20852 0.98399 0.93976 0.95003 1.25270 0.99580 0.99446 1.01892 1.23177 0.92921 0.97638 0.82685 0.85461 1.92805 1.79447 1.93734 1.53697 1.23907 1.03614 0.96440 0.93741 1.24834 1.01840 0.94832 0.95933 1.21038 0.86945 1.03863 1.05830 1.84377 0.94454 1.07789 1.68761 0.88633 0.90865 0.90331 0.86292 0.78495 1.20163 1.21091 0.72270 0.83220 0.82634 0.83689 0.85762 0.88169 0.84739 0.87520 0.86460 0.88052 0.87217 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.12 8.82 71.24 0.63 0.50 16 2 C -0.18 -0.58 6.21 24.59 0.15 -0.43 16 3 C -0.09 -0.38 2.13 -20.92 -0.04 -0.43 16 4 C -0.09 -0.41 1.48 71.24 0.11 -0.31 16 5 O -0.53 -1.38 10.56 -148.98 -1.57 -2.95 16 6 Si 0.79 5.36 30.82 68.60 2.11 7.47 16 7 C -0.70 -2.23 4.11 21.22 0.09 -2.14 16 8 S 2.71 7.95 4.81 -56.49 -0.27 7.68 16 9 O -0.95 -5.97 9.94 -128.00 -1.27 -7.25 16 10 O -0.97 -6.76 15.73 -128.00 -2.01 -8.77 16 11 N -1.08 4.50 4.55 -153.08 -0.70 3.81 16 12 C 0.21 -0.54 1.17 3.38 0.00 -0.54 16 13 C -0.13 -0.03 4.41 -19.82 -0.09 -0.12 16 14 C 0.10 0.10 6.76 22.38 0.15 0.25 16 15 F -0.14 -0.25 13.00 44.97 0.58 0.34 16 16 C -0.16 0.14 10.03 22.31 0.22 0.36 16 17 C -0.08 0.21 10.04 22.26 0.22 0.43 16 18 C -0.13 0.14 10.04 22.27 0.22 0.37 16 19 C -0.06 -0.03 7.35 22.26 0.16 0.13 16 20 C -0.22 0.31 5.28 31.21 0.16 0.48 16 21 C 0.07 -0.18 5.58 31.21 0.17 -0.01 16 22 H 0.13 -0.85 8.14 -2.38 -0.02 -0.87 16 23 F -0.22 -0.82 17.41 44.97 0.78 -0.04 16 24 C -0.14 0.64 7.01 31.12 0.22 0.86 16 25 C -0.05 -0.04 6.49 24.59 0.16 0.12 16 26 C -0.12 0.42 9.13 71.24 0.65 1.08 16 27 S 0.18 0.07 23.31 -56.49 -1.32 -1.25 16 28 H 0.10 -0.11 8.11 -2.39 -0.02 -0.13 16 29 H 0.07 -0.02 8.14 -2.38 -0.02 -0.04 16 30 H 0.08 0.31 5.12 -2.39 -0.01 0.30 16 31 H 0.12 0.55 4.31 -2.40 -0.01 0.54 16 32 H 0.37 -0.34 7.38 -74.06 -0.55 -0.88 16 33 H -0.28 -2.61 6.42 99.48 0.64 -1.97 16 34 H -0.28 -3.47 7.11 99.48 0.71 -2.77 16 35 H 0.44 -4.35 8.83 -96.74 -0.85 -5.20 16 36 H 0.15 -0.59 8.06 -2.91 -0.02 -0.61 16 37 H 0.16 -1.14 8.06 -2.91 -0.02 -1.16 16 38 H 0.15 -0.67 8.06 -2.91 -0.02 -0.70 16 39 H 0.12 -0.13 6.51 -2.91 -0.02 -0.14 16 40 H 0.10 -0.10 2.72 -2.39 -0.01 -0.10 16 41 H 0.14 -0.05 4.16 -2.38 -0.01 -0.06 16 42 H 0.11 -0.29 7.28 -2.39 -0.02 -0.30 16 43 H 0.12 -1.10 8.10 -2.39 -0.02 -1.12 16 44 H 0.10 -0.27 8.14 -2.39 -0.02 -0.28 16 45 H 0.11 -0.91 8.14 -2.38 -0.02 -0.93 16 46 H 0.09 -0.52 6.65 -2.39 -0.02 -0.53 16 Total: 0.00 -16.52 375.63 -0.80 -17.32 By element: Atomic # 1 Polarization: -16.64 SS G_CDS: -0.33 Total: -16.97 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 3.20 Total: 0.61 kcal Atomic # 7 Polarization: 4.50 SS G_CDS: -0.70 Total: 3.81 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -4.86 Total: -18.97 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 1.37 Total: 0.30 kcal Atomic # 14 Polarization: 5.36 SS G_CDS: 2.11 Total: 7.47 kcal Atomic # 16 Polarization: 8.02 SS G_CDS: -1.59 Total: 6.43 kcal Total: -16.52 -0.80 -17.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.887 kcal (2) G-P(sol) polarization free energy of solvation -16.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds