Wall clock time and date at job start Mon Mar 8 2021 12:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.47202 * 2 1 4 4 C 1.50704 * 109.47105 * 239.99701 * 2 1 3 5 5 C 1.38213 * 120.00000 * 284.20387 * 4 2 1 6 6 S 1.76199 * 120.00107 * 359.97438 * 5 4 2 7 7 O 1.42100 * 106.40383 * 182.80895 * 6 5 4 8 8 O 1.42106 * 106.39991 * 49.89423 * 6 5 4 9 9 N 1.65597 * 107.22024 * 296.35233 * 6 5 4 10 10 C 1.46496 * 119.99722 * 296.78679 * 9 6 5 11 11 C 1.50704 * 112.85154 * 312.19718 * 10 9 6 12 12 C 1.38437 * 120.01350 * 283.05104 * 11 10 9 13 13 F 1.35104 * 120.02459 * 0.02562 * 12 11 10 14 14 C 1.38480 * 119.94733 * 179.72238 * 12 11 10 15 15 C 1.38173 * 119.97206 * 0.57780 * 14 12 11 16 16 C 1.38263 * 120.02974 * 359.70258 * 15 14 12 17 17 C 1.38216 * 120.01050 * 103.32827 * 11 10 9 18 18 C 1.53782 * 113.61220 * 181.00535 * 10 9 6 19 19 C 1.53783 * 87.17030 * 270.75663 * 18 10 9 20 20 H 1.09002 * 113.61509 * 89.16076 * 19 18 10 21 21 F 1.39910 * 113.61383 * 220.06009 * 19 18 10 22 22 C 1.53778 * 113.69407 * 83.46895 * 10 9 6 23 23 C 1.38251 * 119.99574 * 179.72492 * 5 4 2 24 24 C 1.38214 * 120.00545 * 0.25325 * 23 5 4 25 25 C 1.38255 * 119.99542 * 359.97438 * 24 23 5 26 26 C 1.38214 * 120.00263 * 0.02952 * 25 24 23 27 27 H 0.96702 * 113.99818 * 300.00304 * 1 2 3 28 28 H 1.09000 * 109.47191 * 120.00328 * 2 1 3 29 29 H 1.48507 * 109.99915 * 184.20632 * 3 2 1 30 30 H 1.48501 * 110.00150 * 305.52267 * 3 2 1 31 31 H 0.97001 * 120.00076 * 116.79251 * 9 6 5 32 32 H 1.08005 * 120.01154 * 180.29438 * 14 12 11 33 33 H 1.08000 * 119.98324 * 179.72042 * 15 14 12 34 34 H 1.08000 * 119.97560 * 180.02562 * 16 15 14 35 35 H 1.07997 * 119.99243 * 0.02562 * 17 11 10 36 36 H 1.08997 * 113.61769 * 25.34407 * 18 10 9 37 37 H 1.09004 * 113.61755 * 156.16770 * 18 10 9 38 38 H 1.08993 * 113.61806 * 203.67357 * 22 10 9 39 39 H 1.09006 * 113.61417 * 334.57889 * 22 10 9 40 40 H 1.08007 * 119.99924 * 180.27382 * 23 5 4 41 41 H 1.07994 * 120.00229 * 180.02562 * 24 23 5 42 42 H 1.07998 * 119.99915 * 179.97438 * 25 24 23 43 43 H 1.08006 * 119.99770 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.8848 -2.0901 -1.2992 6 16 1.2387 -3.0183 0.0520 7 8 1.3879 -4.3883 -0.2945 8 8 -0.0133 -2.4315 0.3796 9 7 2.2334 -2.7530 1.3491 10 6 3.6342 -3.1786 1.2970 11 6 3.7982 -4.5928 0.8028 12 6 3.5266 -5.6568 1.6457 13 9 3.1139 -5.4281 2.9116 14 6 3.6723 -6.9557 1.1883 15 6 4.0999 -7.1883 -0.1049 16 6 4.3765 -6.1249 -0.9440 17 6 4.2254 -4.8279 -0.4905 18 6 4.4162 -2.8825 2.5877 19 6 4.7582 -1.5136 1.9760 20 1 4.0242 -0.7396 2.2002 21 9 6.0735 -1.1037 2.2197 22 6 4.5608 -2.1702 0.5976 23 6 2.3404 -2.7415 -2.4304 24 6 2.8472 -2.0135 -3.4903 25 6 2.8981 -0.6337 -3.4195 26 6 2.4427 0.0176 -2.2887 27 1 -0.3933 0.4418 0.7650 28 1 1.7923 -0.5139 0.8899 29 1 3.5315 1.7713 -0.1024 30 1 1.4549 2.5056 -1.1357 31 1 1.8884 -2.3158 2.1433 32 1 3.4561 -7.7866 1.8435 33 1 4.2179 -8.2013 -0.4603 34 1 4.7103 -6.3077 -1.9548 35 1 4.4421 -3.9980 -1.1468 36 1 3.7865 -2.8192 3.4750 37 1 5.2842 -3.5264 2.7297 38 1 5.4691 -2.6183 0.1948 39 1 4.0477 -1.5317 -0.1217 40 1 2.2999 -3.8194 -2.4860 41 1 3.2027 -2.5224 -4.3740 42 1 3.2945 -0.0648 -4.2475 43 1 2.4829 1.0955 -2.2333 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17636828_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:57 Heat of formation + Delta-G solvation = -87.317712 kcal Electronic energy + Delta-G solvation = -36246.291852 eV Core-core repulsion = 31408.970583 eV Total energy + Delta-G solvation = -4837.321270 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.088 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -49.79211 -48.64068 -41.35752 -40.71124 -39.00556 -38.29189 -37.39575 -36.72034 -33.82159 -33.08258 -32.59447 -32.13570 -31.37062 -27.43634 -27.07559 -25.96327 -24.54555 -23.60303 -22.87023 -22.78635 -21.36062 -20.49610 -19.22620 -18.62375 -18.59539 -18.35378 -17.83289 -17.58259 -17.32008 -17.08314 -17.01333 -16.70504 -16.44913 -16.04748 -15.90139 -15.82582 -15.60582 -15.28650 -15.07005 -15.01068 -14.38052 -14.36066 -14.18045 -14.02238 -13.93940 -13.69235 -13.60012 -13.40194 -13.25570 -13.18934 -12.90574 -12.77394 -12.72686 -12.47698 -12.26049 -12.25127 -12.16429 -11.94940 -11.70050 -11.57943 -10.84911 -10.56866 -10.37641 -10.20534 -9.92648 -9.58948 -5.16609 -0.70895 -0.36409 -0.03754 0.14901 0.28632 1.01597 1.45397 1.74605 1.80228 2.22900 2.57755 2.72607 2.81890 2.98756 3.08080 3.10549 3.22213 3.34317 3.36456 3.49856 3.58109 3.64011 3.75387 3.80907 3.86033 3.90219 3.99853 4.08968 4.19084 4.29480 4.31179 4.36948 4.40109 4.40667 4.43348 4.54516 4.59796 4.64724 4.83283 4.85040 4.96956 5.02672 5.07958 5.10681 5.17087 5.29990 5.44846 5.55175 5.69982 5.93335 6.59739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.512 6.512 2 C -0.107 4.107 3 Si 0.686 3.314 4 C 0.027 3.973 5 C -0.653 4.653 6 S 2.684 3.316 7 O -0.941 6.941 8 O -0.923 6.923 9 N -1.096 6.096 10 C 0.200 3.800 11 C -0.126 4.126 12 C 0.130 3.870 13 F -0.135 7.135 14 C -0.152 4.152 15 C -0.078 4.078 16 C -0.124 4.124 17 C -0.070 4.070 18 C -0.144 4.144 19 C 0.070 3.930 20 H 0.113 0.887 21 F -0.199 7.199 22 C -0.177 4.177 23 C -0.020 4.020 24 C -0.132 4.132 25 C -0.056 4.056 26 C -0.141 4.141 27 H 0.384 0.616 28 H 0.069 0.931 29 H -0.248 1.248 30 H -0.244 1.244 31 H 0.423 0.577 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 1.959 0.075 3.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.318 6.318 2 C -0.217 4.217 3 Si 0.586 3.414 4 C 0.026 3.974 5 C -0.739 4.739 6 S 2.773 3.227 7 O -0.931 6.931 8 O -0.913 6.913 9 N -0.854 5.854 10 C 0.110 3.890 11 C -0.128 4.128 12 C 0.110 3.890 13 F -0.114 7.114 14 C -0.171 4.171 15 C -0.096 4.096 16 C -0.142 4.142 17 C -0.089 4.089 18 C -0.184 4.184 19 C 0.034 3.966 20 H 0.131 0.869 21 F -0.180 7.180 22 C -0.216 4.216 23 C -0.040 4.040 24 C -0.151 4.151 25 C -0.074 4.074 26 C -0.159 4.159 27 H 0.232 0.768 28 H 0.087 0.913 29 H -0.172 1.172 30 H -0.168 1.168 31 H 0.259 0.741 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.165 1.684 -1.039 3.733 hybrid contribution 0.205 0.229 -0.141 0.339 sum 3.370 1.913 -1.180 4.051 Atomic orbital electron populations 1.86689 1.14155 1.81772 1.49207 1.25030 0.88597 1.11745 0.96378 0.95043 0.80586 0.77117 0.88678 1.18890 0.92982 0.91533 0.94002 1.30828 1.18065 1.05961 1.19004 1.02453 0.73094 0.74082 0.73106 1.93639 1.85702 1.30491 1.83259 1.93713 1.36856 1.78181 1.82576 1.55590 1.20690 1.76402 1.32753 1.19322 0.80867 0.89934 0.98851 1.19462 1.05624 0.92440 0.95274 1.17364 0.98671 0.93484 0.79476 1.91499 1.87663 1.95453 1.36758 1.21151 1.03032 0.95194 0.97732 1.21070 0.96142 0.99765 0.92610 1.21120 1.00741 0.92136 1.00229 1.20824 0.96871 0.97706 0.93453 1.23919 1.01241 0.96340 0.96855 1.23024 0.80703 0.96195 0.96651 0.86904 1.92846 1.37947 1.92134 1.95064 1.24358 1.01338 0.98202 0.97735 1.21091 0.91091 1.00866 0.90913 1.21396 1.00340 0.94134 0.99188 1.21460 0.94190 0.94967 0.96831 1.21092 1.01184 0.99573 0.94081 0.76811 0.91281 1.17183 1.16812 0.74102 0.84564 0.84854 0.85130 0.85418 0.88440 0.86973 0.86736 0.89293 0.83417 0.84351 0.84602 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -0.59 10.53 -57.71 -0.61 -1.19 16 2 C -0.11 0.04 1.85 36.01 0.07 0.11 16 3 Si 0.69 -1.31 30.04 -169.99 -5.11 -6.42 16 4 C 0.03 0.04 4.13 -104.62 -0.43 -0.40 16 5 C -0.65 -1.03 4.55 -39.59 -0.18 -1.21 16 6 S 2.68 6.52 4.92 -107.50 -0.53 5.99 16 7 O -0.94 -4.15 13.96 -57.17 -0.80 -4.95 16 8 O -0.92 -4.65 15.03 -66.40 -1.00 -5.65 16 9 N -1.10 0.81 4.37 0.26 0.00 0.81 16 10 C 0.20 -0.16 0.89 -132.16 -0.12 -0.28 16 11 C -0.13 -0.11 3.03 -104.55 -0.32 -0.43 16 12 C 0.13 0.27 7.07 -39.42 -0.28 -0.01 16 13 F -0.14 -0.33 15.99 2.25 0.04 -0.30 16 14 C -0.15 -0.18 10.03 -39.52 -0.40 -0.58 16 15 C -0.08 0.00 10.04 -39.60 -0.40 -0.40 16 16 C -0.12 0.04 10.04 -39.58 -0.40 -0.36 16 17 C -0.07 0.00 8.10 -39.59 -0.32 -0.32 16 18 C -0.14 0.25 6.12 -25.92 -0.16 0.09 16 19 C 0.07 -0.12 5.59 -25.83 -0.14 -0.26 16 20 H 0.11 -0.45 8.14 -51.93 -0.42 -0.88 16 21 F -0.20 -0.24 17.41 2.25 0.04 -0.20 16 22 C -0.18 0.28 6.14 -25.83 -0.16 0.12 16 23 C -0.02 -0.01 8.96 -39.59 -0.35 -0.36 16 24 C -0.13 0.12 10.05 -39.58 -0.40 -0.28 16 25 C -0.06 0.03 10.05 -39.58 -0.40 -0.36 16 26 C -0.14 -0.12 8.66 -39.58 -0.34 -0.46 16 27 H 0.38 -1.37 8.74 45.56 0.40 -0.97 16 28 H 0.07 -0.19 5.81 -51.93 -0.30 -0.49 16 29 H -0.25 0.03 7.11 56.52 0.40 0.44 16 30 H -0.24 -0.22 6.96 56.52 0.39 0.17 16 31 H 0.42 -1.38 8.49 -34.47 -0.29 -1.68 16 32 H 0.14 -0.04 8.06 -52.48 -0.42 -0.46 16 33 H 0.13 -0.30 8.06 -52.49 -0.42 -0.72 16 34 H 0.13 -0.34 8.06 -52.49 -0.42 -0.77 16 35 H 0.13 -0.23 6.40 -52.49 -0.34 -0.57 16 36 H 0.10 -0.28 8.12 -51.93 -0.42 -0.70 16 37 H 0.11 -0.15 8.09 -51.93 -0.42 -0.57 16 38 H 0.11 -0.22 7.42 -51.93 -0.39 -0.61 16 39 H 0.09 -0.15 5.62 -51.93 -0.29 -0.44 16 40 H 0.15 -0.06 7.34 -52.48 -0.39 -0.44 16 41 H 0.14 -0.46 8.06 -52.49 -0.42 -0.88 16 42 H 0.14 -0.40 8.06 -52.49 -0.42 -0.82 16 43 H 0.13 0.02 5.05 -52.48 -0.27 -0.25 16 LS Contribution 361.13 15.07 5.44 5.44 Total: 0.00 -10.80 361.13 -11.69 -22.49 By element: Atomic # 1 Polarization: -6.19 SS G_CDS: -4.44 Total: -10.63 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -4.72 Total: -5.39 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: 0.00 Total: 0.81 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -2.40 Total: -11.79 kcal Atomic # 9 Polarization: -0.57 SS G_CDS: 0.08 Total: -0.50 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.11 Total: -6.42 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -0.53 Total: 5.99 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -10.80 -11.69 -22.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.828 kcal (2) G-P(sol) polarization free energy of solvation -10.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds