Wall clock time and date at job start Mon Mar 8 2021 12:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.47202 * 2 1 4 4 C 1.50704 * 109.47105 * 239.99701 * 2 1 3 5 5 C 1.38213 * 120.00000 * 284.20387 * 4 2 1 6 6 S 1.76199 * 120.00107 * 359.97438 * 5 4 2 7 7 O 1.42100 * 106.40383 * 182.80895 * 6 5 4 8 8 O 1.42106 * 106.39991 * 49.89423 * 6 5 4 9 9 N 1.65597 * 107.22024 * 296.35233 * 6 5 4 10 10 C 1.46496 * 119.99722 * 296.78679 * 9 6 5 11 11 C 1.50704 * 112.85154 * 312.19718 * 10 9 6 12 12 C 1.38437 * 120.01350 * 283.05104 * 11 10 9 13 13 F 1.35104 * 120.02459 * 0.02562 * 12 11 10 14 14 C 1.38480 * 119.94733 * 179.72238 * 12 11 10 15 15 C 1.38173 * 119.97206 * 0.57780 * 14 12 11 16 16 C 1.38263 * 120.02974 * 359.70258 * 15 14 12 17 17 C 1.38216 * 120.01050 * 103.32827 * 11 10 9 18 18 C 1.53782 * 113.61220 * 181.00535 * 10 9 6 19 19 C 1.53783 * 87.17030 * 270.75663 * 18 10 9 20 20 H 1.09002 * 113.61509 * 89.16076 * 19 18 10 21 21 F 1.39910 * 113.61383 * 220.06009 * 19 18 10 22 22 C 1.53778 * 113.69407 * 83.46895 * 10 9 6 23 23 C 1.38251 * 119.99574 * 179.72492 * 5 4 2 24 24 C 1.38214 * 120.00545 * 0.25325 * 23 5 4 25 25 C 1.38255 * 119.99542 * 359.97438 * 24 23 5 26 26 C 1.38214 * 120.00263 * 0.02952 * 25 24 23 27 27 H 0.96702 * 113.99818 * 300.00304 * 1 2 3 28 28 H 1.09000 * 109.47191 * 120.00328 * 2 1 3 29 29 H 1.48507 * 109.99915 * 184.20632 * 3 2 1 30 30 H 1.48501 * 110.00150 * 305.52267 * 3 2 1 31 31 H 0.97001 * 120.00076 * 116.79251 * 9 6 5 32 32 H 1.08005 * 120.01154 * 180.29438 * 14 12 11 33 33 H 1.08000 * 119.98324 * 179.72042 * 15 14 12 34 34 H 1.08000 * 119.97560 * 180.02562 * 16 15 14 35 35 H 1.07997 * 119.99243 * 0.02562 * 17 11 10 36 36 H 1.08997 * 113.61769 * 25.34407 * 18 10 9 37 37 H 1.09004 * 113.61755 * 156.16770 * 18 10 9 38 38 H 1.08993 * 113.61806 * 203.67357 * 22 10 9 39 39 H 1.09006 * 113.61417 * 334.57889 * 22 10 9 40 40 H 1.08007 * 119.99924 * 180.27382 * 23 5 4 41 41 H 1.07994 * 120.00229 * 180.02562 * 24 23 5 42 42 H 1.07998 * 119.99915 * 179.97438 * 25 24 23 43 43 H 1.08006 * 119.99770 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.8848 -2.0901 -1.2992 6 16 1.2387 -3.0183 0.0520 7 8 1.3879 -4.3883 -0.2945 8 8 -0.0133 -2.4315 0.3796 9 7 2.2334 -2.7530 1.3491 10 6 3.6342 -3.1786 1.2970 11 6 3.7982 -4.5928 0.8028 12 6 3.5266 -5.6568 1.6457 13 9 3.1139 -5.4281 2.9116 14 6 3.6723 -6.9557 1.1883 15 6 4.0999 -7.1883 -0.1049 16 6 4.3765 -6.1249 -0.9440 17 6 4.2254 -4.8279 -0.4905 18 6 4.4162 -2.8825 2.5877 19 6 4.7582 -1.5136 1.9760 20 1 4.0242 -0.7396 2.2002 21 9 6.0735 -1.1037 2.2197 22 6 4.5608 -2.1702 0.5976 23 6 2.3404 -2.7415 -2.4304 24 6 2.8472 -2.0135 -3.4903 25 6 2.8981 -0.6337 -3.4195 26 6 2.4427 0.0176 -2.2887 27 1 -0.3933 0.4418 0.7650 28 1 1.7923 -0.5139 0.8899 29 1 3.5315 1.7713 -0.1024 30 1 1.4549 2.5056 -1.1357 31 1 1.8884 -2.3158 2.1433 32 1 3.4561 -7.7866 1.8435 33 1 4.2179 -8.2013 -0.4603 34 1 4.7103 -6.3077 -1.9548 35 1 4.4421 -3.9980 -1.1468 36 1 3.7865 -2.8192 3.4750 37 1 5.2842 -3.5264 2.7297 38 1 5.4691 -2.6183 0.1948 39 1 4.0477 -1.5317 -0.1217 40 1 2.2999 -3.8194 -2.4860 41 1 3.2027 -2.5224 -4.3740 42 1 3.2945 -0.0648 -4.2475 43 1 2.4829 1.0955 -2.2333 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17636828_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:05:56 Heat of formation + Delta-G solvation = -87.098199 kcal Electronic energy + Delta-G solvation = -36246.282333 eV Core-core repulsion = 31408.970583 eV Total energy + Delta-G solvation = -4837.311751 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.088 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.89235 -48.61734 -41.29917 -40.67044 -38.95697 -38.44934 -37.42364 -36.95956 -33.78954 -33.04135 -32.57270 -32.10596 -31.35321 -27.30889 -27.01842 -25.90064 -24.53259 -23.58657 -22.82724 -22.75587 -21.33131 -20.52815 -19.24430 -18.64198 -18.60557 -18.40158 -17.78149 -17.57788 -17.31725 -17.04032 -16.96082 -16.69376 -16.53231 -16.06300 -15.92334 -15.82228 -15.62215 -15.23150 -15.04232 -14.97644 -14.34215 -14.33555 -14.20541 -14.02516 -13.92831 -13.62546 -13.58117 -13.44306 -13.21764 -13.18074 -13.11214 -12.94092 -12.75225 -12.42130 -12.25441 -12.21339 -12.13107 -11.93114 -11.67616 -11.46247 -10.80043 -10.55681 -10.30788 -10.17010 -9.91464 -9.60453 -5.01825 -0.79904 -0.38594 -0.01314 0.15801 0.27882 1.13542 1.57646 1.74730 1.86983 2.25587 2.56101 2.66745 2.90954 3.07924 3.17615 3.20785 3.25768 3.33600 3.37912 3.58673 3.68882 3.75660 3.81947 3.90237 3.94972 3.97451 4.09420 4.18311 4.25974 4.34582 4.39532 4.44761 4.47454 4.50655 4.56746 4.64971 4.66464 4.78878 4.88253 4.89557 5.04099 5.07352 5.16171 5.17231 5.19547 5.34484 5.47269 5.62096 5.84838 5.96166 6.85598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.126 4.126 3 Si 0.773 3.227 4 C 0.012 3.988 5 C -0.661 4.661 6 S 2.693 3.307 7 O -0.967 6.967 8 O -0.956 6.956 9 N -1.086 6.086 10 C 0.198 3.802 11 C -0.132 4.132 12 C 0.103 3.897 13 F -0.144 7.144 14 C -0.169 4.169 15 C -0.086 4.086 16 C -0.128 4.128 17 C -0.078 4.078 18 C -0.142 4.142 19 C 0.068 3.932 20 H 0.139 0.861 21 F -0.216 7.216 22 C -0.175 4.175 23 C -0.029 4.029 24 C -0.129 4.129 25 C -0.057 4.057 26 C -0.159 4.159 27 H 0.400 0.600 28 H 0.089 0.911 29 H -0.267 1.267 30 H -0.286 1.286 31 H 0.433 0.567 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.152 0.848 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 2.464 -0.609 4.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.235 4.235 3 Si 0.675 3.325 4 C 0.010 3.990 5 C -0.749 4.749 6 S 2.784 3.216 7 O -0.957 6.957 8 O -0.946 6.946 9 N -0.848 5.848 10 C 0.109 3.891 11 C -0.135 4.135 12 C 0.083 3.917 13 F -0.123 7.123 14 C -0.188 4.188 15 C -0.104 4.104 16 C -0.146 4.146 17 C -0.097 4.097 18 C -0.181 4.181 19 C 0.032 3.968 20 H 0.156 0.844 21 F -0.196 7.196 22 C -0.214 4.214 23 C -0.049 4.049 24 C -0.148 4.148 25 C -0.074 4.074 26 C -0.177 4.177 27 H 0.251 0.749 28 H 0.107 0.893 29 H -0.193 1.193 30 H -0.213 1.213 31 H 0.273 0.727 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.170 0.830 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.990 2.167 -1.671 4.838 hybrid contribution -0.041 0.052 -0.015 0.068 sum 3.949 2.219 -1.686 4.833 Atomic orbital electron populations 1.86636 1.15103 1.82401 1.50616 1.25381 0.88094 1.13362 0.96677 0.94087 0.77764 0.74064 0.86577 1.19158 0.93237 0.91640 0.94935 1.30639 1.19133 1.06064 1.19048 1.01845 0.72806 0.73502 0.73474 1.93602 1.86118 1.32141 1.83850 1.93668 1.39067 1.78574 1.83304 1.55290 1.20578 1.76412 1.32491 1.19367 0.80615 0.89457 0.99668 1.19671 1.05349 0.92921 0.95524 1.17669 1.00056 0.94373 0.79578 1.91463 1.87966 1.95546 1.37295 1.21407 1.03486 0.95275 0.98631 1.21387 0.95716 1.01056 0.92202 1.21497 0.99918 0.91915 1.01271 1.21113 0.96590 0.98561 0.93404 1.23911 1.01008 0.96261 0.96953 1.23283 0.80274 0.96840 0.96420 0.84374 1.92811 1.39379 1.92294 1.95159 1.24362 1.01184 0.97916 0.97942 1.21285 0.91207 1.01289 0.91078 1.21710 0.99431 0.94110 0.99532 1.21813 0.93275 0.95391 0.96961 1.21295 1.01880 0.99833 0.94721 0.74897 0.89311 1.19333 1.21284 0.72748 0.83958 0.82839 0.82771 0.83874 0.87303 0.87547 0.86445 0.88993 0.83029 0.81673 0.82206 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.55 10.53 -127.49 -1.34 -2.89 16 2 C -0.13 0.09 1.85 71.24 0.13 0.22 16 3 Si 0.77 -3.08 30.04 68.60 2.06 -1.02 16 4 C 0.01 0.03 4.13 -19.86 -0.08 -0.05 16 5 C -0.66 -2.26 4.55 22.27 0.10 -2.16 16 6 S 2.69 15.38 4.92 -56.49 -0.28 15.10 16 7 O -0.97 -9.65 13.96 -128.00 -1.79 -11.44 16 8 O -0.96 -10.84 15.03 -119.18 -1.79 -12.64 16 9 N -1.09 1.21 4.37 -153.09 -0.67 0.54 16 10 C 0.20 -0.28 0.89 3.39 0.00 -0.28 16 11 C -0.13 -0.31 3.03 -19.82 -0.06 -0.37 16 12 C 0.10 0.55 7.07 22.37 0.16 0.71 16 13 F -0.14 -0.92 15.99 44.97 0.72 -0.20 16 14 C -0.17 -0.58 10.03 22.31 0.22 -0.36 16 15 C -0.09 -0.01 10.04 22.26 0.22 0.21 16 16 C -0.13 0.13 10.04 22.27 0.22 0.36 16 17 C -0.08 0.00 8.10 22.26 0.18 0.18 16 18 C -0.14 0.48 6.12 31.12 0.19 0.67 16 19 C 0.07 -0.27 5.59 31.18 0.17 -0.09 16 20 H 0.14 -1.30 8.14 -2.39 -0.02 -1.32 16 21 F -0.22 -0.46 17.41 44.97 0.78 0.32 16 22 C -0.17 0.60 6.14 31.18 0.19 0.79 16 23 C -0.03 -0.02 8.96 22.27 0.20 0.18 16 24 C -0.13 0.39 10.05 22.27 0.22 0.61 16 25 C -0.06 0.13 10.05 22.27 0.22 0.35 16 26 C -0.16 -0.23 8.66 22.27 0.19 -0.04 16 27 H 0.40 -2.69 8.74 -74.06 -0.65 -3.34 16 28 H 0.09 -0.52 5.81 -2.39 -0.01 -0.53 16 29 H -0.27 0.21 7.11 99.48 0.71 0.92 16 30 H -0.29 -0.79 6.96 99.48 0.69 -0.10 16 31 H 0.43 -2.77 8.49 -96.74 -0.82 -3.59 16 32 H 0.14 0.11 8.06 -2.91 -0.02 0.08 16 33 H 0.15 -0.76 8.06 -2.91 -0.02 -0.78 16 34 H 0.15 -1.02 8.06 -2.91 -0.02 -1.04 16 35 H 0.14 -0.57 6.40 -2.91 -0.02 -0.59 16 36 H 0.11 -0.64 8.12 -2.39 -0.02 -0.66 16 37 H 0.11 -0.21 8.09 -2.39 -0.02 -0.23 16 38 H 0.12 -0.48 7.42 -2.39 -0.02 -0.50 16 39 H 0.09 -0.35 5.62 -2.38 -0.01 -0.36 16 40 H 0.15 -0.11 7.34 -2.91 -0.02 -0.14 16 41 H 0.17 -1.47 8.06 -2.91 -0.02 -1.49 16 42 H 0.16 -1.23 8.06 -2.91 -0.02 -1.26 16 43 H 0.13 0.07 5.05 -2.91 -0.01 0.05 16 Total: 0.00 -26.01 361.13 -0.15 -26.16 By element: Atomic # 1 Polarization: -14.53 SS G_CDS: -0.34 Total: -14.87 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 2.50 Total: 0.94 kcal Atomic # 7 Polarization: 1.21 SS G_CDS: -0.67 Total: 0.54 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -4.92 Total: -26.97 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 1.50 Total: 0.12 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: 2.06 Total: -1.02 kcal Atomic # 16 Polarization: 15.38 SS G_CDS: -0.28 Total: 15.10 kcal Total: -26.01 -0.15 -26.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17636828_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.938 kcal (2) G-P(sol) polarization free energy of solvation -26.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds