Wall clock time and date at job start Mon Mar 8 2021 12:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47136 * 2 1 4 4 C 1.50703 * 109.46749 * 239.99961 * 2 1 3 5 5 C 1.38234 * 120.00257 * 299.99985 * 4 2 1 6 6 C 1.38230 * 119.99864 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 5 4 8 8 S 1.76199 * 120.00342 * 179.70391 * 7 6 5 9 9 O 1.42099 * 106.40466 * 203.54194 * 8 7 6 10 10 O 1.42098 * 106.40181 * 336.46004 * 8 7 6 11 11 N 1.65602 * 107.21888 * 89.99875 * 8 7 6 12 12 C 1.46500 * 119.99756 * 65.00258 * 11 8 7 13 13 C 1.52998 * 109.46901 * 164.99878 * 12 11 8 14 14 H 1.09004 * 112.85338 * 316.19800 * 13 12 11 15 15 C 1.53790 * 113.61258 * 87.50090 * 13 12 11 16 16 C 1.53782 * 87.07904 * 89.11644 * 15 13 12 17 17 O 1.42892 * 113.61519 * 270.88299 * 16 15 13 18 18 C 1.53002 * 113.61199 * 139.98132 * 16 15 13 19 19 F 1.39905 * 109.47009 * 322.49951 * 18 16 15 20 20 F 1.39897 * 109.47352 * 82.50072 * 18 16 15 21 21 F 1.39899 * 109.47148 * 202.50241 * 18 16 15 22 22 C 1.53784 * 87.08419 * 25.43397 * 16 15 13 23 23 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 24 24 C 1.38234 * 119.99499 * 120.02503 * 4 2 1 25 25 H 0.96696 * 113.99852 * 60.00197 * 1 2 3 26 26 H 1.08997 * 109.47247 * 120.00129 * 2 1 3 27 27 H 1.48506 * 109.99704 * 60.00085 * 3 2 1 28 28 H 1.48501 * 109.99886 * 181.31947 * 3 2 1 29 29 H 1.08002 * 119.99744 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 31 31 H 0.97000 * 119.99945 * 245.00458 * 11 8 7 32 32 H 1.09000 * 109.47104 * 284.99861 * 12 11 8 33 33 H 1.08996 * 109.47400 * 45.00315 * 12 11 8 34 34 H 1.09004 * 113.60863 * 203.66310 * 15 13 12 35 35 H 1.08991 * 113.61159 * 334.56406 * 15 13 12 36 36 H 0.96703 * 113.99824 * 277.50102 * 17 16 15 37 37 H 1.08993 * 113.61632 * 220.02222 * 22 16 15 38 38 H 1.08997 * 113.69336 * 89.12029 * 22 16 15 39 39 H 1.08001 * 120.00279 * 180.02562 * 23 7 6 40 40 H 1.07997 * 120.00479 * 359.97255 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5973 -2.0339 -1.4493 6 6 2.0576 -2.6853 -2.5782 7 6 2.8523 -2.0135 -3.4882 8 16 3.4455 -2.8461 -4.9233 9 8 4.6117 -2.1485 -5.3387 10 8 3.4382 -4.2331 -4.6143 11 7 2.3193 -2.6273 -6.1176 12 6 2.0591 -1.2842 -6.6418 13 6 1.2820 -1.3912 -7.9554 14 1 1.6722 -2.1652 -8.6163 15 6 -0.2430 -1.4519 -7.7657 16 6 -0.2336 0.0843 -7.8346 17 8 -0.0510 0.7131 -6.5645 18 6 -1.4052 0.6694 -8.6258 19 9 -1.6817 -0.1510 -9.7248 20 9 -2.5339 0.7423 -7.8026 21 9 -1.0711 1.9520 -9.0737 22 6 1.0624 -0.0385 -8.6532 23 6 3.1863 -0.6901 -3.2694 24 6 2.7264 -0.0387 -2.1402 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5138 0.8899 27 1 1.5615 2.4678 1.2086 28 1 3.5346 1.7702 -0.0321 29 1 0.9768 -2.5588 -0.7381 30 1 1.7971 -3.7194 -2.7490 31 1 1.8320 -3.3883 -6.4700 32 1 1.4725 -0.7189 -5.9176 33 1 3.0056 -0.7741 -6.8202 34 1 -0.7678 -1.9231 -8.5969 35 1 -0.5469 -1.8437 -6.7952 36 1 -0.8627 0.7932 -6.0450 37 1 1.8121 0.7106 -8.3990 38 1 0.8958 -0.1233 -9.7270 39 1 3.8068 -0.1650 -3.9806 40 1 2.9873 0.9952 -1.9693 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17664670_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:19:58 Heat of formation + Delta-G solvation = -240.898204 kcal Electronic energy + Delta-G solvation = -32356.967053 eV Core-core repulsion = 27237.754428 eV Total energy + Delta-G solvation = -5119.212625 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.078 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.26939 -48.82239 -48.72127 -41.38376 -40.77093 -38.28975 -37.82502 -37.02873 -36.88335 -35.33188 -33.09489 -32.27895 -29.81968 -27.38926 -27.31701 -26.75426 -24.18361 -23.60822 -23.06525 -21.02194 -20.56516 -20.15407 -19.57232 -19.45128 -19.28141 -18.58356 -18.18254 -17.62182 -17.29992 -16.87525 -16.55660 -16.38607 -16.12302 -15.92777 -15.79150 -15.58866 -15.52466 -15.24998 -15.18124 -14.92006 -14.89808 -14.86871 -14.70326 -14.57912 -14.48281 -14.01768 -14.00610 -13.87187 -13.32978 -13.15882 -13.12791 -13.05791 -12.72381 -12.62431 -12.45789 -12.26213 -12.00404 -11.90691 -11.77914 -11.35730 -10.78993 -10.62495 -10.39850 -10.22669 -5.18993 -0.75148 -0.41241 0.11060 1.09557 1.43261 1.49056 1.81621 1.83873 2.21432 2.28397 2.48239 2.53706 2.69506 2.75543 3.14356 3.16064 3.22298 3.30267 3.37025 3.39096 3.54387 3.67373 3.72976 4.06007 4.07443 4.19918 4.24035 4.25144 4.28562 4.32680 4.49068 4.50233 4.52813 4.65140 4.72363 4.74606 4.86960 4.90138 4.93896 5.15787 5.61062 5.78342 5.93965 6.34849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.078 4.078 3 Si 0.691 3.309 4 C -0.063 4.063 5 C -0.114 4.114 6 C -0.017 4.017 7 C -0.675 4.675 8 S 2.696 3.304 9 O -0.952 6.952 10 O -0.955 6.955 11 N -1.116 6.116 12 C 0.126 3.874 13 C -0.106 4.106 14 H 0.103 0.897 15 C -0.155 4.155 16 C 0.062 3.938 17 O -0.509 6.509 18 C 0.433 3.567 19 F -0.175 7.175 20 F -0.183 7.183 21 F -0.175 7.175 22 C -0.111 4.111 23 C -0.013 4.013 24 C -0.138 4.138 25 H 0.380 0.620 26 H 0.120 0.880 27 H -0.251 1.251 28 H -0.255 1.255 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.420 0.580 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.391 0.609 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.145 0.855 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 2.047 -1.900 4.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.188 4.188 3 Si 0.592 3.408 4 C -0.063 4.063 5 C -0.133 4.133 6 C -0.036 4.036 7 C -0.761 4.761 8 S 2.785 3.215 9 O -0.942 6.942 10 O -0.945 6.945 11 N -0.877 5.877 12 C 0.000 4.000 13 C -0.126 4.126 14 H 0.122 0.878 15 C -0.193 4.193 16 C 0.018 3.982 17 O -0.316 6.316 18 C 0.378 3.622 19 F -0.156 7.156 20 F -0.165 7.165 21 F -0.156 7.156 22 C -0.149 4.149 23 C -0.032 4.032 24 C -0.156 4.156 25 H 0.228 0.772 26 H 0.137 0.863 27 H -0.176 1.176 28 H -0.180 1.180 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.255 0.745 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.242 0.758 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.163 0.837 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.266 2.094 -1.115 2.689 hybrid contribution -1.586 -0.378 0.536 1.716 sum -2.853 1.716 -0.579 3.379 Atomic orbital electron populations 1.86538 1.16584 1.81656 1.49272 1.25228 0.85623 1.10603 0.97367 0.94695 0.81230 0.77385 0.87479 1.20742 0.94970 0.94969 0.95651 1.21176 1.00181 0.94046 0.97930 1.20990 0.91155 0.99445 0.91991 1.30985 1.15477 1.07361 1.22304 1.01866 0.73255 0.73370 0.72978 1.93611 1.44333 1.75288 1.80959 1.93622 1.86205 1.30439 1.84252 1.55510 1.61707 1.15669 1.54794 1.21318 1.01026 0.82447 0.95181 1.22356 0.94698 0.98566 0.96993 0.87839 1.23825 0.97620 0.92490 1.05336 1.23668 0.93711 0.94182 0.86646 1.86600 1.37603 1.80954 1.26421 1.21296 0.84728 0.76867 0.79319 1.93193 1.94389 1.72289 1.55750 1.93188 1.55052 1.96240 1.71990 1.93232 1.92189 1.40263 1.89911 1.23167 0.94135 0.98153 0.99448 1.20915 0.93912 0.91904 0.96498 1.21164 0.99387 1.00121 0.94969 0.77239 0.86269 1.17593 1.17984 0.84535 0.83947 0.74510 0.89445 0.89435 0.87275 0.88727 0.75797 0.88074 0.86864 0.83697 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.71 12.77 -35.23 -0.45 0.26 16 2 C -0.08 0.12 2.82 36.01 0.10 0.22 16 3 Si 0.69 -1.49 29.79 -169.99 -5.06 -6.56 16 4 C -0.06 0.07 5.39 -104.62 -0.56 -0.50 16 5 C -0.11 0.07 9.61 -39.59 -0.38 -0.31 16 6 C -0.02 0.01 9.52 -39.59 -0.38 -0.37 16 7 C -0.67 0.20 5.95 -39.58 -0.24 -0.04 16 8 S 2.70 0.96 5.74 -107.50 -0.62 0.35 16 9 O -0.95 -3.09 16.75 -57.17 -0.96 -4.05 16 10 O -0.96 -3.22 17.28 -57.17 -0.99 -4.21 16 11 N -1.12 3.30 6.00 -10.62 -0.06 3.24 16 12 C 0.13 -0.45 5.81 -4.04 -0.02 -0.47 16 13 C -0.11 0.47 3.97 -89.80 -0.36 0.11 16 14 H 0.10 -0.52 8.14 -51.93 -0.42 -0.95 16 15 C -0.16 0.72 6.90 -25.91 -0.18 0.54 16 16 C 0.06 -0.22 1.36 -89.80 -0.12 -0.34 16 17 O -0.51 2.05 11.44 -35.23 -0.40 1.64 16 18 C 0.43 -0.62 2.85 37.16 0.11 -0.52 16 19 F -0.17 0.13 15.76 2.25 0.04 0.17 16 20 F -0.18 0.17 16.65 2.25 0.04 0.20 16 21 F -0.17 -0.06 17.18 2.25 0.04 -0.02 16 22 C -0.11 0.44 6.86 -25.91 -0.18 0.26 16 23 C -0.01 0.01 9.52 -39.58 -0.38 -0.37 16 24 C -0.14 0.21 8.67 -39.58 -0.34 -0.14 16 25 H 0.38 -2.03 8.70 45.56 0.40 -1.63 16 26 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 28 H -0.26 -0.07 7.11 56.52 0.40 0.33 16 29 H 0.14 -0.19 8.06 -52.49 -0.42 -0.62 16 30 H 0.14 -0.22 7.62 -52.49 -0.40 -0.62 16 31 H 0.42 -1.94 8.65 -34.47 -0.30 -2.24 16 32 H 0.09 -0.36 6.12 -51.93 -0.32 -0.68 16 33 H 0.09 -0.28 7.75 -51.93 -0.40 -0.68 16 34 H 0.11 -0.52 7.13 -51.93 -0.37 -0.89 16 35 H 0.09 -0.49 8.10 -51.93 -0.42 -0.91 16 36 H 0.39 -2.59 8.43 45.56 0.38 -2.21 16 37 H 0.10 -0.40 8.10 -51.93 -0.42 -0.82 16 38 H 0.11 -0.52 7.89 -51.93 -0.41 -0.93 16 39 H 0.15 -0.33 7.62 -52.49 -0.40 -0.73 16 40 H 0.14 -0.47 4.88 -52.49 -0.26 -0.73 16 LS Contribution 357.95 15.07 5.39 5.39 Total: 0.00 -10.88 357.95 -9.34 -20.22 By element: Atomic # 1 Polarization: -11.36 SS G_CDS: -3.37 Total: -14.73 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.93 Total: -1.90 kcal Atomic # 7 Polarization: 3.30 SS G_CDS: -0.06 Total: 3.24 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -2.80 Total: -6.36 kcal Atomic # 9 Polarization: 0.24 SS G_CDS: 0.11 Total: 0.35 kcal Atomic # 14 Polarization: -1.49 SS G_CDS: -5.06 Total: -6.56 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -0.62 Total: 0.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -10.88 -9.34 -20.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.682 kcal (2) G-P(sol) polarization free energy of solvation -10.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds