Wall clock time and date at job start Mon Mar 8 2021 12:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47136 * 2 1 4 4 C 1.50703 * 109.46749 * 239.99961 * 2 1 3 5 5 C 1.38234 * 120.00257 * 299.99985 * 4 2 1 6 6 C 1.38230 * 119.99864 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 5 4 8 8 S 1.76199 * 120.00342 * 179.70391 * 7 6 5 9 9 O 1.42099 * 106.40466 * 203.54194 * 8 7 6 10 10 O 1.42098 * 106.40181 * 336.46004 * 8 7 6 11 11 N 1.65602 * 107.21888 * 89.99875 * 8 7 6 12 12 C 1.46500 * 119.99756 * 65.00258 * 11 8 7 13 13 C 1.52998 * 109.46901 * 164.99878 * 12 11 8 14 14 H 1.09004 * 112.85338 * 316.19800 * 13 12 11 15 15 C 1.53790 * 113.61258 * 87.50090 * 13 12 11 16 16 C 1.53782 * 87.07904 * 89.11644 * 15 13 12 17 17 O 1.42892 * 113.61519 * 270.88299 * 16 15 13 18 18 C 1.53002 * 113.61199 * 139.98132 * 16 15 13 19 19 F 1.39905 * 109.47009 * 322.49951 * 18 16 15 20 20 F 1.39897 * 109.47352 * 82.50072 * 18 16 15 21 21 F 1.39899 * 109.47148 * 202.50241 * 18 16 15 22 22 C 1.53784 * 87.08419 * 25.43397 * 16 15 13 23 23 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 24 24 C 1.38234 * 119.99499 * 120.02503 * 4 2 1 25 25 H 0.96696 * 113.99852 * 60.00197 * 1 2 3 26 26 H 1.08997 * 109.47247 * 120.00129 * 2 1 3 27 27 H 1.48506 * 109.99704 * 60.00085 * 3 2 1 28 28 H 1.48501 * 109.99886 * 181.31947 * 3 2 1 29 29 H 1.08002 * 119.99744 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 31 31 H 0.97000 * 119.99945 * 245.00458 * 11 8 7 32 32 H 1.09000 * 109.47104 * 284.99861 * 12 11 8 33 33 H 1.08996 * 109.47400 * 45.00315 * 12 11 8 34 34 H 1.09004 * 113.60863 * 203.66310 * 15 13 12 35 35 H 1.08991 * 113.61159 * 334.56406 * 15 13 12 36 36 H 0.96703 * 113.99824 * 277.50102 * 17 16 15 37 37 H 1.08993 * 113.61632 * 220.02222 * 22 16 15 38 38 H 1.08997 * 113.69336 * 89.12029 * 22 16 15 39 39 H 1.08001 * 120.00279 * 180.02562 * 23 7 6 40 40 H 1.07997 * 120.00479 * 359.97255 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5973 -2.0339 -1.4493 6 6 2.0576 -2.6853 -2.5782 7 6 2.8523 -2.0135 -3.4882 8 16 3.4455 -2.8461 -4.9233 9 8 4.6117 -2.1485 -5.3387 10 8 3.4382 -4.2331 -4.6143 11 7 2.3193 -2.6273 -6.1176 12 6 2.0591 -1.2842 -6.6418 13 6 1.2820 -1.3912 -7.9554 14 1 1.6722 -2.1652 -8.6163 15 6 -0.2430 -1.4519 -7.7657 16 6 -0.2336 0.0843 -7.8346 17 8 -0.0510 0.7131 -6.5645 18 6 -1.4052 0.6694 -8.6258 19 9 -1.6817 -0.1510 -9.7248 20 9 -2.5339 0.7423 -7.8026 21 9 -1.0711 1.9520 -9.0737 22 6 1.0624 -0.0385 -8.6532 23 6 3.1863 -0.6901 -3.2694 24 6 2.7264 -0.0387 -2.1402 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5138 0.8899 27 1 1.5615 2.4678 1.2086 28 1 3.5346 1.7702 -0.0321 29 1 0.9768 -2.5588 -0.7381 30 1 1.7971 -3.7194 -2.7490 31 1 1.8320 -3.3883 -6.4700 32 1 1.4725 -0.7189 -5.9176 33 1 3.0056 -0.7741 -6.8202 34 1 -0.7678 -1.9231 -8.5969 35 1 -0.5469 -1.8437 -6.7952 36 1 -0.8627 0.7932 -6.0450 37 1 1.8121 0.7106 -8.3990 38 1 0.8958 -0.1233 -9.7270 39 1 3.8068 -0.1650 -3.9806 40 1 2.9873 0.9952 -1.9693 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664670_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:19:57 Heat of formation + Delta-G solvation = -246.502312 kcal Electronic energy + Delta-G solvation = -32357.210065 eV Core-core repulsion = 27237.754428 eV Total energy + Delta-G solvation = -5119.455638 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.078 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -51.16708 -48.71546 -48.65198 -41.05799 -40.66824 -38.41913 -37.69757 -37.03062 -36.73578 -35.07844 -33.00306 -32.17816 -29.59201 -27.22381 -27.03109 -26.54123 -24.08061 -23.35895 -22.97778 -20.82555 -20.41217 -19.95397 -19.46873 -19.32196 -19.20424 -18.50115 -18.12696 -17.48031 -17.02219 -16.75476 -16.43562 -16.16680 -15.99099 -15.81463 -15.66175 -15.49734 -15.46815 -15.10083 -15.04955 -14.83664 -14.80901 -14.75743 -14.49525 -14.44851 -14.30547 -13.93757 -13.85333 -13.74969 -13.31802 -13.23215 -13.04341 -12.94557 -12.63402 -12.41805 -12.30292 -12.00153 -11.95981 -11.81049 -11.49117 -11.06447 -10.66906 -10.41211 -10.30294 -10.13404 -5.04817 -0.72940 -0.36673 0.20534 1.22992 1.59636 1.62058 1.90636 1.93455 2.34715 2.55455 2.68069 2.71608 2.78027 3.01152 3.21440 3.41112 3.47127 3.49877 3.52932 3.62004 3.79194 3.83320 3.86675 4.20648 4.31370 4.37470 4.41199 4.56077 4.60685 4.61946 4.64090 4.83367 4.85457 4.87634 4.96111 4.98533 4.99650 5.07856 5.25992 5.27512 5.71255 6.07261 6.40740 6.70328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.080 4.080 3 Si 0.777 3.223 4 C -0.063 4.063 5 C -0.122 4.122 6 C -0.025 4.025 7 C -0.677 4.677 8 S 2.712 3.288 9 O -0.984 6.984 10 O -0.989 6.989 11 N -1.103 6.103 12 C 0.120 3.880 13 C -0.102 4.102 14 H 0.112 0.888 15 C -0.150 4.150 16 C 0.065 3.935 17 O -0.513 6.513 18 C 0.428 3.572 19 F -0.180 7.180 20 F -0.188 7.188 21 F -0.188 7.188 22 C -0.115 4.115 23 C -0.020 4.020 24 C -0.139 4.139 25 H 0.398 0.602 26 H 0.113 0.887 27 H -0.298 1.298 28 H -0.285 1.285 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.429 0.571 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.402 0.598 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.157 0.843 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 2.280 -2.121 4.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.190 4.190 3 Si 0.683 3.317 4 C -0.064 4.064 5 C -0.141 4.141 6 C -0.045 4.045 7 C -0.765 4.765 8 S 2.803 3.197 9 O -0.974 6.974 10 O -0.979 6.979 11 N -0.866 5.866 12 C -0.005 4.005 13 C -0.122 4.122 14 H 0.130 0.870 15 C -0.187 4.187 16 C 0.021 3.979 17 O -0.322 6.322 18 C 0.373 3.627 19 F -0.162 7.162 20 F -0.169 7.169 21 F -0.169 7.169 22 C -0.153 4.153 23 C -0.040 4.040 24 C -0.158 4.158 25 H 0.248 0.752 26 H 0.131 0.869 27 H -0.226 1.226 28 H -0.212 1.212 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.266 0.734 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.255 0.745 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.175 0.825 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.789 2.300 -1.373 3.221 hybrid contribution -1.489 -0.392 0.645 1.669 sum -3.278 1.908 -0.728 3.862 Atomic orbital electron populations 1.86502 1.16527 1.82121 1.50600 1.25295 0.85797 1.10957 0.96953 0.93720 0.77962 0.74918 0.85065 1.20828 0.94903 0.94897 0.95781 1.21302 1.00402 0.94402 0.97988 1.21127 0.91321 0.99878 0.92140 1.30828 1.15929 1.07687 1.22052 1.01071 0.73132 0.72268 0.73211 1.93568 1.46526 1.75653 1.81655 1.93571 1.86879 1.32545 1.84949 1.55183 1.61086 1.16505 1.53859 1.21465 1.01254 0.81860 0.95920 1.22303 0.94742 0.98604 0.96526 0.86961 1.23841 0.97364 0.91517 1.05998 1.23724 0.92830 0.94669 0.86628 1.86580 1.38495 1.80973 1.26164 1.21720 0.85282 0.76359 0.79323 1.93177 1.94497 1.72324 1.56178 1.93173 1.55511 1.96235 1.72027 1.93201 1.92288 1.41316 1.90130 1.23252 0.93896 0.98354 0.99826 1.21147 0.93989 0.91788 0.97035 1.21376 0.98882 1.00990 0.94512 0.75222 0.86934 1.22638 1.21211 0.84047 0.83369 0.73363 0.88588 0.89751 0.86986 0.87815 0.74520 0.88155 0.86371 0.82541 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.86 12.77 -148.98 -1.90 -0.05 16 2 C -0.08 0.28 2.82 71.24 0.20 0.48 16 3 Si 0.78 -3.60 29.79 68.60 2.04 -1.55 16 4 C -0.06 0.17 5.39 -19.87 -0.11 0.07 16 5 C -0.12 0.18 9.61 22.27 0.21 0.40 16 6 C -0.03 0.02 9.52 22.27 0.21 0.23 16 7 C -0.68 0.39 5.95 22.27 0.13 0.52 16 8 S 2.71 3.18 5.74 -56.49 -0.32 2.85 16 9 O -0.98 -7.04 16.75 -128.00 -2.14 -9.18 16 10 O -0.99 -7.52 17.28 -128.00 -2.21 -9.73 16 11 N -1.10 6.84 6.00 -187.50 -1.12 5.71 16 12 C 0.12 -0.93 5.81 86.38 0.50 -0.43 16 13 C -0.10 0.99 3.97 -10.26 -0.04 0.95 16 14 H 0.11 -1.26 8.14 -2.39 -0.02 -1.28 16 15 C -0.15 1.53 6.90 31.12 0.21 1.75 16 16 C 0.07 -0.50 1.36 -10.27 -0.01 -0.51 16 17 O -0.51 4.55 11.44 -148.98 -1.70 2.85 16 18 C 0.43 -1.26 2.85 71.98 0.21 -1.05 16 19 F -0.18 0.28 15.76 44.97 0.71 0.99 16 20 F -0.19 0.36 16.65 44.97 0.75 1.11 16 21 F -0.19 -0.18 17.18 44.97 0.77 0.59 16 22 C -0.12 0.97 6.86 31.12 0.21 1.18 16 23 C -0.02 0.05 9.52 22.27 0.21 0.26 16 24 C -0.14 0.53 8.67 22.27 0.19 0.73 16 25 H 0.40 -4.70 8.70 -74.06 -0.64 -5.35 16 26 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 27 H -0.30 -0.99 7.11 99.48 0.71 -0.28 16 28 H -0.29 -0.12 7.11 99.48 0.71 0.59 16 29 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 30 H 0.15 -0.39 7.62 -2.91 -0.02 -0.42 16 31 H 0.43 -4.17 8.65 -96.74 -0.84 -5.01 16 32 H 0.10 -0.89 6.12 -2.39 -0.01 -0.90 16 33 H 0.08 -0.56 7.75 -2.39 -0.02 -0.58 16 34 H 0.11 -1.17 7.13 -2.38 -0.02 -1.19 16 35 H 0.10 -1.23 8.10 -2.39 -0.02 -1.25 16 36 H 0.40 -5.67 8.43 -74.06 -0.62 -6.29 16 37 H 0.10 -0.82 8.10 -2.39 -0.02 -0.84 16 38 H 0.12 -1.12 7.89 -2.39 -0.02 -1.14 16 39 H 0.16 -0.79 7.62 -2.91 -0.02 -0.81 16 40 H 0.16 -1.27 4.88 -2.91 -0.01 -1.28 16 Total: 0.00 -24.64 357.95 -3.92 -28.56 By element: Atomic # 1 Polarization: -25.80 SS G_CDS: -0.92 Total: -26.72 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 2.14 Total: 4.57 kcal Atomic # 7 Polarization: 6.84 SS G_CDS: -1.12 Total: 5.71 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -7.96 Total: -16.11 kcal Atomic # 9 Polarization: 0.45 SS G_CDS: 2.23 Total: 2.68 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: 2.04 Total: -1.55 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -0.32 Total: 2.85 kcal Total: -24.64 -3.92 -28.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.942 kcal (2) G-P(sol) polarization free energy of solvation -24.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds