Wall clock time and date at job start Mon Mar 8 2021 12:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86300 * 109.47496 * 2 1 4 4 C 1.50704 * 109.46917 * 240.00337 * 2 1 3 5 5 C 1.33394 * 122.53521 * 285.00150 * 4 2 1 6 6 S 1.76200 * 125.20603 * 359.97438 * 5 4 2 7 7 O 1.42095 * 106.39836 * 336.46098 * 6 5 4 8 8 O 1.42103 * 106.40117 * 203.53992 * 6 5 4 9 9 N 1.65598 * 107.21395 * 90.00121 * 6 5 4 10 10 C 1.46496 * 120.00181 * 65.00537 * 9 6 5 11 11 C 1.53007 * 109.47116 * 164.99721 * 10 9 6 12 12 H 1.08995 * 112.85015 * 43.80117 * 11 10 9 13 13 C 1.53781 * 113.61328 * 174.99970 * 11 10 9 14 14 C 1.53778 * 87.08511 * 89.11169 * 13 11 10 15 15 O 1.42905 * 113.61682 * 270.80301 * 14 13 11 16 16 C 1.52997 * 113.61423 * 139.97832 * 14 13 11 17 17 F 1.39905 * 109.47157 * 181.53106 * 16 14 13 18 18 F 1.39900 * 109.47010 * 61.53497 * 16 14 13 19 19 F 1.39897 * 109.47422 * 301.53188 * 16 14 13 20 20 C 1.53781 * 87.17132 * 25.38913 * 14 13 11 21 21 S 1.75885 * 109.58896 * 180.26273 * 5 4 2 22 22 C 1.75885 * 90.97172 * 359.68654 * 21 5 4 23 23 C 1.33383 * 109.59528 * 0.31172 * 22 21 5 24 24 H 0.96703 * 114.00345 * 59.99483 * 1 2 3 25 25 H 1.08997 * 109.47457 * 120.00561 * 2 1 3 26 26 H 1.48502 * 110.00031 * 298.68653 * 3 2 1 27 27 H 1.48502 * 109.99872 * 60.00196 * 3 2 1 28 28 H 0.97005 * 119.99728 * 244.99805 * 9 6 5 29 29 H 1.08997 * 109.47220 * 44.99439 * 10 9 6 30 30 H 1.08999 * 109.47188 * 284.99199 * 10 9 6 31 31 H 1.09003 * 113.61067 * 334.56437 * 13 11 10 32 32 H 1.08997 * 113.61682 * 203.66598 * 13 11 10 33 33 H 0.96695 * 113.99736 * 178.46972 * 15 14 13 34 34 H 1.09000 * 113.61753 * 89.15738 * 20 14 13 35 35 H 1.08999 * 113.61854 * 220.05963 * 20 14 13 36 36 H 1.07997 * 125.20154 * 180.02562 * 22 21 5 37 37 H 1.07992 * 122.54515 * 179.73621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 1.8959 -2.0378 -1.3573 6 16 1.2761 -3.1577 -0.1464 7 8 1.3611 -2.4855 1.1026 8 8 1.9005 -4.4088 -0.4000 9 7 -0.3372 -3.3693 -0.4547 10 6 -0.7670 -4.0121 -1.6990 11 6 -2.2364 -4.4217 -1.5802 12 1 -2.8562 -3.6479 -1.1273 13 6 -2.8223 -4.9978 -2.8801 14 6 -2.3436 -6.3755 -2.3927 15 8 -1.0103 -6.6941 -2.7963 16 6 -3.3361 -7.5048 -2.6764 17 9 -2.8321 -8.7071 -2.1687 18 9 -3.5242 -7.6243 -4.0575 19 9 -4.5595 -7.2158 -2.0624 20 6 -2.4376 -5.8176 -0.9628 21 16 2.5703 -2.4996 -2.9147 22 6 2.8624 -0.8137 -3.3218 23 6 2.4646 -0.0349 -2.3147 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5139 0.8899 26 1 1.5879 2.4586 -1.2242 27 1 1.5616 2.4678 1.2085 28 1 -0.9975 -3.0676 0.1886 29 1 -0.1567 -4.8968 -1.8805 30 1 -0.6503 -3.3139 -2.5278 31 1 -2.3130 -4.6517 -3.7795 32 1 -3.9067 -4.9107 -2.9465 33 1 -0.6953 -7.5492 -2.4731 34 1 -3.4167 -5.9550 -0.5039 35 1 -1.6183 -6.1323 -0.3165 36 1 3.3013 -0.4630 -4.2442 37 1 2.5522 1.0411 -2.3427 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17664670_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:02 Heat of formation + Delta-G solvation = -227.634621 kcal Electronic energy + Delta-G solvation = -31208.631825 eV Core-core repulsion = 26179.146599 eV Total energy + Delta-G solvation = -5029.485227 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.035 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.20557 -48.75438 -48.66110 -41.30722 -40.15848 -38.14697 -37.20125 -36.93192 -36.84604 -35.25063 -31.49149 -29.75293 -27.99231 -27.31872 -26.69376 -24.38082 -23.56800 -21.62558 -20.80126 -20.32022 -19.92311 -19.51698 -19.43563 -19.35380 -18.49065 -18.28835 -17.36283 -17.16885 -16.63252 -16.41393 -16.25735 -16.12490 -15.73021 -15.64837 -15.51718 -15.31604 -15.29761 -15.12098 -14.85067 -14.81927 -14.63568 -14.34157 -14.27080 -14.08268 -13.82133 -13.66635 -13.32384 -13.12803 -13.09236 -13.03901 -12.74024 -12.61462 -12.47303 -12.21506 -12.11473 -11.80979 -11.49692 -11.29641 -10.71416 -10.59433 -10.46951 -9.70531 -5.03870 -0.82986 -0.53967 0.26970 0.61211 1.14938 1.18402 1.49650 1.50118 1.88778 1.95401 2.29833 2.55875 2.60735 2.66739 2.80828 3.17012 3.28153 3.31869 3.41699 3.44170 3.55353 3.61799 3.91965 4.06582 4.15137 4.25700 4.28579 4.36549 4.49240 4.52237 4.58163 4.66052 4.67078 4.79355 4.86726 4.99139 5.02515 5.89023 6.05675 6.27714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.516 6.516 2 C -0.099 4.099 3 Si 0.700 3.300 4 C 0.011 3.989 5 C -0.779 4.779 6 S 2.721 3.279 7 O -0.942 6.942 8 O -0.950 6.950 9 N -1.108 6.108 10 C 0.126 3.874 11 C -0.103 4.103 12 H 0.102 0.898 13 C -0.111 4.111 14 C 0.060 3.940 15 O -0.509 6.509 16 C 0.433 3.567 17 F -0.182 7.182 18 F -0.175 7.175 19 F -0.175 7.175 20 C -0.156 4.156 21 S 0.230 5.770 22 C -0.164 4.164 23 C -0.170 4.170 24 H 0.373 0.627 25 H 0.155 0.845 26 H -0.257 1.257 27 H -0.250 1.250 28 H 0.423 0.577 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.394 0.606 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.178 0.822 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 3.436 -3.152 4.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.321 6.321 2 C -0.211 4.211 3 Si 0.600 3.400 4 C -0.007 4.007 5 C -0.980 4.980 6 S 2.806 3.194 7 O -0.932 6.932 8 O -0.940 6.940 9 N -0.869 5.869 10 C 0.000 4.000 11 C -0.123 4.123 12 H 0.121 0.879 13 C -0.149 4.149 14 C 0.017 3.983 15 O -0.316 6.316 16 C 0.378 3.622 17 F -0.164 7.164 18 F -0.157 7.157 19 F -0.157 7.157 20 C -0.194 4.194 21 S 0.498 5.502 22 C -0.302 4.302 23 C -0.200 4.200 24 H 0.220 0.780 25 H 0.172 0.828 26 H -0.182 1.182 27 H -0.174 1.174 28 H 0.258 0.742 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.245 0.755 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.196 0.804 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.986 2.634 -3.180 4.246 hybrid contribution -1.705 0.908 -0.207 1.943 sum -0.720 3.542 -3.388 4.954 Atomic orbital electron populations 1.86696 1.16754 1.79769 1.48930 1.25488 0.84537 1.12469 0.98584 0.94660 0.91345 0.73438 0.80562 1.19124 0.93864 0.91375 0.96331 1.35778 1.26559 1.14322 1.21322 1.01224 0.72338 0.73082 0.72786 1.93567 1.85483 1.75384 1.38788 1.93625 1.74698 1.40039 1.85670 1.55429 1.26067 1.75052 1.30369 1.21311 0.95337 0.98302 0.85054 1.22355 0.96055 0.97194 0.96727 0.87946 1.23157 1.02522 0.89702 0.99473 1.23666 0.83325 0.91890 0.99454 1.86600 1.24628 1.43125 1.77275 1.21306 0.82203 0.84005 0.74695 1.93195 1.86941 1.49109 1.87136 1.93225 1.95563 1.96324 1.30546 1.93186 1.46344 1.93236 1.82899 1.23856 1.05283 0.95853 0.94365 1.84416 1.55200 1.04767 1.05845 1.26247 1.03273 0.97247 1.03453 1.20363 1.04049 1.02052 0.93515 0.78037 0.82819 1.18215 1.17418 0.74168 0.88144 0.91221 0.88244 0.86878 0.75509 0.87275 0.88517 0.80431 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.01 12.88 -35.23 -0.45 -0.45 16 2 C -0.10 -0.02 1.97 36.01 0.07 0.05 16 3 Si 0.70 -0.92 30.46 -169.99 -5.18 -6.10 16 4 C 0.01 0.00 5.13 -106.24 -0.55 -0.55 16 5 C -0.78 -0.64 6.54 29.04 0.19 -0.45 16 6 S 2.72 5.37 5.76 -107.50 -0.62 4.75 16 7 O -0.94 -3.89 14.92 -57.17 -0.85 -4.74 16 8 O -0.95 -4.33 17.38 -57.17 -0.99 -5.33 16 9 N -1.11 1.22 6.00 -10.61 -0.06 1.16 16 10 C 0.13 -0.23 5.80 -4.04 -0.02 -0.26 16 11 C -0.10 0.33 3.98 -89.71 -0.36 -0.03 16 12 H 0.10 -0.46 8.12 -51.93 -0.42 -0.88 16 13 C -0.11 0.32 6.88 -25.92 -0.18 0.14 16 14 C 0.06 -0.10 1.33 -89.81 -0.12 -0.22 16 15 O -0.51 0.74 11.44 -35.23 -0.40 0.34 16 16 C 0.43 -0.01 2.83 37.16 0.11 0.09 16 17 F -0.18 -0.13 16.72 2.25 0.04 -0.09 16 18 F -0.18 -0.26 17.20 2.25 0.04 -0.22 16 19 F -0.18 -0.06 15.74 2.25 0.04 -0.02 16 20 C -0.16 0.41 6.92 -25.83 -0.18 0.23 16 21 S 0.23 -0.10 23.21 -107.50 -2.50 -2.59 16 22 C -0.16 0.34 11.23 29.04 0.33 0.67 16 23 C -0.17 0.26 8.74 -41.21 -0.36 -0.10 16 24 H 0.37 -1.25 8.70 45.56 0.40 -0.86 16 25 H 0.15 0.24 5.66 -51.93 -0.29 -0.06 16 26 H -0.26 0.14 6.80 56.52 0.38 0.52 16 27 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 28 H 0.42 -1.07 8.64 -34.47 -0.30 -1.37 16 29 H 0.10 -0.07 5.73 -51.93 -0.30 -0.37 16 30 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 31 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16 32 H 0.11 -0.43 7.83 -51.93 -0.41 -0.84 16 33 H 0.39 -1.53 8.50 45.56 0.39 -1.14 16 34 H 0.11 -0.35 7.18 -51.93 -0.37 -0.72 16 35 H 0.10 -0.23 8.10 -51.93 -0.42 -0.65 16 36 H 0.18 -0.84 8.06 -52.49 -0.42 -1.27 16 37 H 0.15 -0.49 5.53 -52.49 -0.29 -0.78 16 LS Contribution 345.27 15.07 5.20 5.20 Total: 0.00 -9.02 345.27 -9.31 -18.34 By element: Atomic # 1 Polarization: -7.33 SS G_CDS: -2.50 Total: -9.83 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.07 Total: -0.41 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -0.06 Total: 1.16 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -2.70 Total: -10.18 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.11 Total: -0.33 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: -5.18 Total: -6.10 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -3.11 Total: 2.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -9.02 -9.31 -18.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.297 kcal (2) G-P(sol) polarization free energy of solvation -9.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds