Wall clock time and date at job start Mon Mar 8 2021 12:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86300 * 109.47496 * 2 1 4 4 C 1.50704 * 109.46917 * 240.00337 * 2 1 3 5 5 C 1.33394 * 122.53521 * 285.00150 * 4 2 1 6 6 S 1.76200 * 125.20603 * 359.97438 * 5 4 2 7 7 O 1.42095 * 106.39836 * 336.46098 * 6 5 4 8 8 O 1.42103 * 106.40117 * 203.53992 * 6 5 4 9 9 N 1.65598 * 107.21395 * 90.00121 * 6 5 4 10 10 C 1.46496 * 120.00181 * 65.00537 * 9 6 5 11 11 C 1.53007 * 109.47116 * 164.99721 * 10 9 6 12 12 H 1.08995 * 112.85015 * 43.80117 * 11 10 9 13 13 C 1.53781 * 113.61328 * 174.99970 * 11 10 9 14 14 C 1.53778 * 87.08511 * 89.11169 * 13 11 10 15 15 O 1.42905 * 113.61682 * 270.80301 * 14 13 11 16 16 C 1.52997 * 113.61423 * 139.97832 * 14 13 11 17 17 F 1.39905 * 109.47157 * 181.53106 * 16 14 13 18 18 F 1.39900 * 109.47010 * 61.53497 * 16 14 13 19 19 F 1.39897 * 109.47422 * 301.53188 * 16 14 13 20 20 C 1.53781 * 87.17132 * 25.38913 * 14 13 11 21 21 S 1.75885 * 109.58896 * 180.26273 * 5 4 2 22 22 C 1.75885 * 90.97172 * 359.68654 * 21 5 4 23 23 C 1.33383 * 109.59528 * 0.31172 * 22 21 5 24 24 H 0.96703 * 114.00345 * 59.99483 * 1 2 3 25 25 H 1.08997 * 109.47457 * 120.00561 * 2 1 3 26 26 H 1.48502 * 110.00031 * 298.68653 * 3 2 1 27 27 H 1.48502 * 109.99872 * 60.00196 * 3 2 1 28 28 H 0.97005 * 119.99728 * 244.99805 * 9 6 5 29 29 H 1.08997 * 109.47220 * 44.99439 * 10 9 6 30 30 H 1.08999 * 109.47188 * 284.99199 * 10 9 6 31 31 H 1.09003 * 113.61067 * 334.56437 * 13 11 10 32 32 H 1.08997 * 113.61682 * 203.66598 * 13 11 10 33 33 H 0.96695 * 113.99736 * 178.46972 * 15 14 13 34 34 H 1.09000 * 113.61753 * 89.15738 * 20 14 13 35 35 H 1.08999 * 113.61854 * 220.05963 * 20 14 13 36 36 H 1.07997 * 125.20154 * 180.02562 * 22 21 5 37 37 H 1.07992 * 122.54515 * 179.73621 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 1.8959 -2.0378 -1.3573 6 16 1.2761 -3.1577 -0.1464 7 8 1.3611 -2.4855 1.1026 8 8 1.9005 -4.4088 -0.4000 9 7 -0.3372 -3.3693 -0.4547 10 6 -0.7670 -4.0121 -1.6990 11 6 -2.2364 -4.4217 -1.5802 12 1 -2.8562 -3.6479 -1.1273 13 6 -2.8223 -4.9978 -2.8801 14 6 -2.3436 -6.3755 -2.3927 15 8 -1.0103 -6.6941 -2.7963 16 6 -3.3361 -7.5048 -2.6764 17 9 -2.8321 -8.7071 -2.1687 18 9 -3.5242 -7.6243 -4.0575 19 9 -4.5595 -7.2158 -2.0624 20 6 -2.4376 -5.8176 -0.9628 21 16 2.5703 -2.4996 -2.9147 22 6 2.8624 -0.8137 -3.3218 23 6 2.4646 -0.0349 -2.3147 24 1 -0.3934 0.4418 -0.7650 25 1 1.7923 -0.5139 0.8899 26 1 1.5879 2.4586 -1.2242 27 1 1.5616 2.4678 1.2085 28 1 -0.9975 -3.0676 0.1886 29 1 -0.1567 -4.8968 -1.8805 30 1 -0.6503 -3.3139 -2.5278 31 1 -2.3130 -4.6517 -3.7795 32 1 -3.9067 -4.9107 -2.9465 33 1 -0.6953 -7.5492 -2.4731 34 1 -3.4167 -5.9550 -0.5039 35 1 -1.6183 -6.1323 -0.3165 36 1 3.3013 -0.4630 -4.2442 37 1 2.5522 1.0411 -2.3427 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664670_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:01 Heat of formation + Delta-G solvation = -232.387476 kcal Electronic energy + Delta-G solvation = -31208.837924 eV Core-core repulsion = 26179.146599 eV Total energy + Delta-G solvation = -5029.691326 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.035 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.22979 -48.77623 -48.71163 -41.12591 -40.09963 -38.34685 -37.16730 -37.05323 -36.81632 -35.14998 -31.40191 -29.66270 -27.97280 -27.10572 -26.60801 -24.28341 -23.45426 -21.62140 -20.66523 -20.28379 -19.89617 -19.52797 -19.43568 -19.32856 -18.48813 -18.33281 -17.27343 -17.07479 -16.60442 -16.39530 -16.19626 -16.06163 -15.69089 -15.65609 -15.54118 -15.27383 -15.21618 -15.15863 -14.89607 -14.85792 -14.56726 -14.24408 -14.15938 -13.98734 -13.77563 -13.67509 -13.30540 -13.24987 -13.12174 -13.08287 -12.82270 -12.44119 -12.41492 -12.19871 -11.96890 -11.62669 -11.46345 -11.14910 -10.66269 -10.51500 -10.38472 -9.64021 -4.92950 -0.82318 -0.57202 0.31598 0.73307 1.25115 1.26698 1.55075 1.56854 1.91862 1.96766 2.46902 2.57404 2.61150 2.71261 2.94053 3.29236 3.39766 3.42860 3.46645 3.53395 3.59090 3.75975 4.10063 4.19725 4.34224 4.46531 4.50651 4.54071 4.59283 4.72599 4.77518 4.79553 4.88444 4.94405 4.98897 5.14089 5.19687 6.02394 6.29654 6.48887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.116 4.116 3 Si 0.777 3.223 4 C 0.016 3.984 5 C -0.798 4.798 6 S 2.727 3.273 7 O -0.971 6.971 8 O -0.985 6.985 9 N -1.097 6.097 10 C 0.121 3.879 11 C -0.096 4.096 12 H 0.121 0.879 13 C -0.109 4.109 14 C 0.059 3.941 15 O -0.519 6.519 16 C 0.429 3.571 17 F -0.189 7.189 18 F -0.186 7.186 19 F -0.177 7.177 20 C -0.156 4.156 21 S 0.213 5.787 22 C -0.145 4.145 23 C -0.178 4.178 24 H 0.387 0.613 25 H 0.135 0.865 26 H -0.255 1.255 27 H -0.299 1.299 28 H 0.429 0.571 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.401 0.599 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.210 0.790 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 4.893 -4.456 6.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.226 4.226 3 Si 0.679 3.321 4 C -0.002 4.002 5 C -1.001 5.001 6 S 2.815 3.185 7 O -0.962 6.962 8 O -0.974 6.974 9 N -0.861 5.861 10 C -0.004 4.004 11 C -0.116 4.116 12 H 0.139 0.861 13 C -0.147 4.147 14 C 0.015 3.985 15 O -0.327 6.327 16 C 0.375 3.625 17 F -0.171 7.171 18 F -0.167 7.167 19 F -0.159 7.159 20 C -0.194 4.194 21 S 0.480 5.520 22 C -0.283 4.283 23 C -0.207 4.207 24 H 0.236 0.764 25 H 0.152 0.848 26 H -0.180 1.180 27 H -0.227 1.227 28 H 0.267 0.733 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.143 0.857 33 H 0.254 0.746 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.226 0.774 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.861 4.049 -4.483 6.102 hybrid contribution -1.701 0.443 0.197 1.769 sum -0.841 4.492 -4.286 6.265 Atomic orbital electron populations 1.86658 1.16762 1.80308 1.50007 1.25701 0.84824 1.13942 0.98104 0.93714 0.90214 0.70431 0.77749 1.19256 0.93320 0.91102 0.96564 1.35480 1.28331 1.14465 1.21799 1.00598 0.72842 0.72536 0.72519 1.93531 1.86157 1.75729 1.40753 1.93579 1.75822 1.41881 1.86164 1.55159 1.24960 1.75015 1.30967 1.21424 0.96012 0.98120 0.84879 1.22313 0.95300 0.97306 0.96698 0.86112 1.23245 1.03245 0.88583 0.99578 1.23821 0.82753 0.91632 1.00279 1.86584 1.24788 1.43803 1.77559 1.21646 0.82489 0.84281 0.74103 1.93176 1.87012 1.49729 1.87165 1.93199 1.95658 1.96405 1.31473 1.93175 1.46624 1.93224 1.82866 1.23906 1.05538 0.96119 0.93822 1.84500 1.55549 1.06634 1.05325 1.26627 1.01746 0.95695 1.04223 1.20539 1.04050 1.03102 0.92963 0.76363 0.84766 1.18011 1.22688 0.73302 0.89427 0.89986 0.87981 0.85730 0.74622 0.86495 0.89019 0.77354 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.10 12.88 -148.98 -1.92 -2.02 16 2 C -0.12 -0.08 1.97 71.24 0.14 0.06 16 3 Si 0.78 -2.47 30.46 68.60 2.09 -0.38 16 4 C 0.02 -0.01 5.13 -20.91 -0.11 -0.11 16 5 C -0.80 -1.70 6.54 66.72 0.44 -1.27 16 6 S 2.73 15.05 5.76 -56.49 -0.33 14.73 16 7 O -0.97 -10.03 14.92 -128.00 -1.91 -11.94 16 8 O -0.98 -11.05 17.38 -128.00 -2.22 -13.27 16 9 N -1.10 1.56 6.00 -187.49 -1.12 0.43 16 10 C 0.12 -0.42 5.80 86.38 0.50 0.08 16 11 C -0.10 0.66 3.98 -10.21 -0.04 0.61 16 12 H 0.12 -1.23 8.12 -2.39 -0.02 -1.25 16 13 C -0.11 0.69 6.88 31.12 0.21 0.90 16 14 C 0.06 -0.18 1.33 -10.27 -0.01 -0.20 16 15 O -0.52 1.08 11.44 -148.98 -1.70 -0.63 16 16 C 0.43 0.19 2.83 71.98 0.20 0.39 16 17 F -0.19 -0.42 16.72 44.97 0.75 0.33 16 18 F -0.19 -0.66 17.20 44.97 0.77 0.11 16 19 F -0.18 -0.14 15.74 44.97 0.71 0.57 16 20 C -0.16 0.80 6.92 31.18 0.22 1.02 16 21 S 0.21 -0.21 23.21 -56.49 -1.31 -1.52 16 22 C -0.15 0.90 11.23 66.72 0.75 1.65 16 23 C -0.18 0.88 8.74 21.22 0.19 1.06 16 24 H 0.39 -2.82 8.70 -74.06 -0.64 -3.47 16 25 H 0.13 0.63 5.66 -2.39 -0.01 0.62 16 26 H -0.25 0.87 6.80 99.48 0.68 1.54 16 27 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 28 H 0.43 -1.92 8.64 -96.74 -0.84 -2.75 16 29 H 0.09 -0.04 5.73 -2.39 -0.01 -0.05 16 30 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.10 -0.68 8.10 -2.39 -0.02 -0.70 16 32 H 0.12 -1.07 7.83 -2.39 -0.02 -1.09 16 33 H 0.40 -2.60 8.50 -74.06 -0.63 -3.23 16 34 H 0.12 -0.78 7.18 -2.39 -0.02 -0.80 16 35 H 0.09 -0.36 8.10 -2.39 -0.02 -0.38 16 36 H 0.21 -2.67 8.06 -2.91 -0.02 -2.70 16 37 H 0.18 -1.62 5.53 -2.91 -0.02 -1.64 16 Total: 0.00 -21.97 345.27 -4.62 -26.58 By element: Atomic # 1 Polarization: -16.29 SS G_CDS: -0.91 Total: -17.19 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 2.48 Total: 4.20 kcal Atomic # 7 Polarization: 1.56 SS G_CDS: -1.12 Total: 0.43 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -7.76 Total: -27.86 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 2.23 Total: 1.01 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 2.09 Total: -0.38 kcal Atomic # 16 Polarization: 14.84 SS G_CDS: -1.64 Total: 13.20 kcal Total: -21.97 -4.62 -26.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.804 kcal (2) G-P(sol) polarization free energy of solvation -21.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds