Wall clock time and date at job start Mon Mar 8 2021 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86301 * 109.47285 * 2 1 4 4 C 1.50701 * 109.47111 * 239.99621 * 2 1 3 5 5 C 1.33386 * 125.20584 * 312.92783 * 4 2 1 6 6 S 1.76207 * 122.53871 * 0.02562 * 5 4 2 7 7 O 1.42100 * 106.40110 * 313.27980 * 6 5 4 8 8 O 1.42100 * 106.40152 * 180.35972 * 6 5 4 9 9 N 1.65593 * 107.21862 * 66.81789 * 6 5 4 10 10 C 1.46500 * 120.00055 * 65.00221 * 9 6 5 11 11 C 1.52999 * 109.47404 * 163.87903 * 10 9 6 12 12 H 1.09003 * 112.90682 * 316.25607 * 11 10 9 13 13 C 1.53788 * 113.61346 * 87.50373 * 11 10 9 14 14 C 1.53780 * 87.07856 * 89.11710 * 13 11 10 15 15 O 1.42902 * 113.61534 * 270.87968 * 14 13 11 16 16 C 1.53003 * 113.68450 * 139.99438 * 14 13 11 17 17 F 1.39897 * 109.47243 * 322.45941 * 16 14 13 18 18 F 1.39898 * 109.47160 * 82.46431 * 16 14 13 19 19 F 1.39902 * 109.46491 * 202.46298 * 16 14 13 20 20 C 1.53774 * 113.61634 * 185.00003 * 11 10 9 21 21 C 1.38415 * 114.92495 * 179.75462 * 5 4 2 22 22 C 1.33392 * 114.91839 * 0.24617 * 21 5 4 23 23 S 1.75884 * 109.59483 * 0.02562 * 22 21 5 24 24 H 0.96697 * 113.99898 * 60.52201 * 1 2 3 25 25 H 1.09001 * 109.46617 * 119.99881 * 2 1 3 26 26 H 1.48501 * 109.99791 * 298.68304 * 3 2 1 27 27 H 1.48497 * 109.99805 * 59.99504 * 3 2 1 28 28 H 0.97002 * 120.00092 * 245.00325 * 9 6 5 29 29 H 1.08998 * 109.47214 * 43.88153 * 10 9 6 30 30 H 1.09001 * 109.47044 * 283.88236 * 10 9 6 31 31 H 1.08999 * 113.61154 * 334.56348 * 13 11 10 32 32 H 1.09005 * 113.61367 * 203.66859 * 13 11 10 33 33 H 0.96693 * 114.00034 * 277.50651 * 15 14 13 34 34 H 1.09001 * 113.61670 * 156.33595 * 20 11 10 35 35 H 1.08994 * 113.61591 * 25.43400 * 20 11 10 36 36 H 1.07999 * 122.54597 * 180.26986 * 21 5 4 37 37 H 1.08007 * 125.20331 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.4879 -1.8879 -1.6735 6 16 0.2178 -2.7921 -0.8525 7 8 0.5522 -2.7898 0.5286 8 8 0.0238 -3.9830 -1.6031 9 7 -1.1796 -1.9155 -0.9967 10 6 -1.7766 -1.7006 -2.3172 11 6 -3.2235 -1.2314 -2.1526 12 1 -3.7690 -1.7955 -1.3960 13 6 -3.3638 0.2930 -2.0047 14 6 -3.4624 0.3535 -3.5382 15 8 -2.1966 0.4834 -4.1886 16 6 -4.4983 1.3575 -4.0482 17 9 -5.6140 1.3458 -3.2043 18 9 -3.9377 2.6392 -4.0627 19 9 -4.8901 1.0052 -5.3442 20 6 -3.9814 -1.0930 -3.4834 21 6 2.0968 -2.3427 -2.8303 22 6 3.0385 -1.5372 -3.3239 23 16 3.1951 -0.1160 -2.2996 24 1 -0.3933 0.4347 -0.7690 25 1 1.7923 -0.5138 0.8900 26 1 1.5880 2.4585 -1.2242 27 1 1.5615 2.4679 1.2084 28 1 -1.6030 -1.5442 -0.2068 29 1 -1.7591 -2.6338 -2.8801 30 1 -1.2073 -0.9417 -2.8541 31 1 -2.4725 0.7767 -1.6050 32 1 -4.2775 0.6000 -1.4959 33 1 -1.8650 1.3909 -4.2260 34 1 -5.0640 -1.1648 -3.3789 35 1 -3.5888 -1.7280 -4.2775 36 1 1.8295 -3.2787 -3.2981 37 1 3.6164 -1.7284 -4.2161 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664670_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:05 Heat of formation + Delta-G solvation = -228.183818 kcal Electronic energy + Delta-G solvation = -32068.690848 eV Core-core repulsion = 27039.181807 eV Total energy + Delta-G solvation = -5029.509042 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.035 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.23632 -48.78388 -48.72167 -41.13772 -39.66925 -38.40960 -37.58410 -36.94769 -36.71433 -35.05184 -31.80040 -29.62517 -27.48422 -27.09638 -26.55888 -24.37132 -23.40392 -21.77886 -20.66735 -20.18438 -19.89871 -19.52556 -19.38023 -19.33112 -18.57535 -18.02903 -17.24541 -17.07747 -16.93204 -16.48409 -16.22990 -15.92990 -15.70496 -15.55761 -15.42471 -15.23146 -15.16587 -14.97352 -14.90360 -14.80243 -14.55822 -14.41213 -14.05142 -14.01001 -13.86804 -13.76733 -13.27367 -13.17592 -13.06140 -12.97276 -12.83143 -12.53144 -12.35792 -12.25621 -11.98443 -11.64835 -11.50053 -11.14111 -11.00697 -10.34510 -10.11134 -9.72248 -5.08868 -0.67835 -0.46909 0.40037 0.65995 1.09390 1.15255 1.53605 1.54888 1.85098 2.08077 2.48065 2.60760 2.70012 2.71841 2.94594 3.14457 3.30254 3.40113 3.43400 3.49341 3.58209 3.81941 4.12885 4.27384 4.35928 4.47599 4.51082 4.56280 4.59212 4.73171 4.79736 4.80942 4.92559 4.96693 5.04168 5.15391 5.24049 6.19340 6.29464 6.30691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.080 4.080 3 Si 0.737 3.263 4 C -0.105 4.105 5 C -0.674 4.674 6 S 2.726 3.274 7 O -0.982 6.982 8 O -0.996 6.996 9 N -1.091 6.091 10 C 0.125 3.875 11 C -0.099 4.099 12 H 0.112 0.888 13 C -0.147 4.147 14 C 0.064 3.936 15 O -0.515 6.515 16 C 0.428 3.572 17 F -0.179 7.179 18 F -0.188 7.188 19 F -0.189 7.189 20 C -0.116 4.116 21 C -0.097 4.097 22 C -0.210 4.210 23 S 0.195 5.805 24 H 0.390 0.610 25 H 0.145 0.855 26 H -0.247 1.247 27 H -0.266 1.266 28 H 0.431 0.569 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.401 0.599 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.154 0.846 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 4.887 -1.449 5.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.190 4.190 3 Si 0.635 3.365 4 C -0.227 4.227 5 C -0.776 4.776 6 S 2.815 3.185 7 O -0.972 6.972 8 O -0.986 6.986 9 N -0.857 5.857 10 C -0.001 4.001 11 C -0.119 4.119 12 H 0.130 0.870 13 C -0.184 4.184 14 C 0.020 3.980 15 O -0.324 6.324 16 C 0.373 3.627 17 F -0.160 7.160 18 F -0.170 7.170 19 F -0.170 7.170 20 C -0.154 4.154 21 C -0.125 4.125 22 C -0.346 4.346 23 S 0.459 5.541 24 H 0.241 0.759 25 H 0.163 0.837 26 H -0.171 1.171 27 H -0.191 1.191 28 H 0.271 0.729 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.253 0.747 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.171 0.829 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.255 5.233 -0.813 6.216 hybrid contribution -1.946 -0.084 -0.829 2.117 sum 1.309 5.149 -1.642 5.560 Atomic orbital electron populations 1.86650 1.16416 1.80257 1.50067 1.25214 0.84766 1.12705 0.96293 0.94039 0.90529 0.71266 0.80631 1.25176 1.00178 0.96840 1.00462 1.29675 1.24867 1.10361 1.12706 1.00642 0.73038 0.72664 0.72187 1.93547 1.84009 1.86930 1.32735 1.93537 1.85924 1.45108 1.74046 1.55213 1.40859 1.73922 1.15726 1.21353 0.93592 1.02365 0.82743 1.22283 0.95010 0.96315 0.98320 0.86999 1.23848 1.06060 0.97140 0.91364 1.23762 0.83533 0.95209 0.95470 1.86608 1.31075 1.35192 1.79541 1.21704 0.83370 0.81946 0.75636 1.93178 1.55415 1.96481 1.70958 1.93172 1.84789 1.42686 1.96312 1.93201 1.92033 1.91754 1.40009 1.23259 1.02160 0.90987 0.99041 1.19837 0.96773 1.01769 0.94090 1.26251 1.04278 0.98313 1.05741 1.84115 1.33021 1.20904 1.16034 0.75934 0.83728 1.17141 1.19060 0.72933 0.90621 0.88994 0.87499 0.86797 0.74693 0.86279 0.88580 0.82851 0.78707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 2.47 8.66 -146.14 -1.27 1.21 16 2 C -0.08 0.26 2.07 71.24 0.15 0.41 16 3 Si 0.74 -4.42 31.06 68.60 2.13 -2.29 16 4 C -0.11 0.19 5.74 24.59 0.14 0.33 16 5 C -0.67 -1.02 5.77 21.21 0.12 -0.89 16 6 S 2.73 13.06 4.94 -56.49 -0.28 12.78 16 7 O -0.98 -10.50 16.66 -124.83 -2.08 -12.58 16 8 O -1.00 -11.18 16.80 -128.00 -2.15 -13.33 16 9 N -1.09 3.54 3.98 -187.49 -0.75 2.79 16 10 C 0.13 -0.67 5.81 86.38 0.50 -0.17 16 11 C -0.10 0.81 3.97 -10.27 -0.04 0.77 16 12 H 0.11 -1.04 8.14 -2.39 -0.02 -1.06 16 13 C -0.15 1.42 6.91 31.12 0.21 1.63 16 14 C 0.06 -0.40 1.36 -10.27 -0.01 -0.42 16 15 O -0.52 3.61 11.44 -148.98 -1.70 1.90 16 16 C 0.43 -0.77 2.85 71.98 0.21 -0.56 16 17 F -0.18 0.11 15.76 44.97 0.71 0.82 16 18 F -0.19 0.17 16.65 44.97 0.75 0.92 16 19 F -0.19 -0.46 17.18 44.97 0.77 0.32 16 20 C -0.12 0.77 6.86 31.12 0.21 0.98 16 21 C -0.10 -0.07 9.69 21.21 0.21 0.13 16 22 C -0.21 0.68 11.23 66.72 0.75 1.42 16 23 S 0.20 -0.97 20.69 -56.49 -1.17 -2.13 16 24 H 0.39 -4.38 7.91 -74.06 -0.59 -4.96 16 25 H 0.15 -0.27 7.71 -2.39 -0.02 -0.29 16 26 H -0.25 1.17 7.11 99.48 0.71 1.87 16 27 H -0.27 -0.03 7.11 99.48 0.71 0.68 16 28 H 0.43 -2.57 7.59 -96.75 -0.73 -3.31 16 29 H 0.08 -0.20 7.73 -2.39 -0.02 -0.22 16 30 H 0.09 -0.67 6.12 -2.39 -0.01 -0.68 16 31 H 0.11 -1.38 7.60 -2.39 -0.02 -1.40 16 32 H 0.11 -1.12 7.14 -2.38 -0.02 -1.14 16 33 H 0.40 -4.94 8.42 -74.06 -0.62 -5.56 16 34 H 0.12 -0.94 7.88 -2.39 -0.02 -0.96 16 35 H 0.10 -0.53 8.10 -2.39 -0.02 -0.55 16 36 H 0.15 0.13 7.74 -2.91 -0.02 0.11 16 37 H 0.20 -1.58 8.06 -2.91 -0.02 -1.60 16 Total: 0.00 -21.73 340.44 -3.31 -25.03 By element: Atomic # 1 Polarization: -18.36 SS G_CDS: -0.72 Total: -19.08 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 2.45 Total: 3.64 kcal Atomic # 7 Polarization: 3.54 SS G_CDS: -0.75 Total: 2.79 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -7.20 Total: -22.80 kcal Atomic # 9 Polarization: -0.17 SS G_CDS: 2.23 Total: 2.06 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: 2.13 Total: -2.29 kcal Atomic # 16 Polarization: 12.09 SS G_CDS: -1.45 Total: 10.64 kcal Total: -21.73 -3.31 -25.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.149 kcal (2) G-P(sol) polarization free energy of solvation -21.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds