Wall clock time and date at job start Mon Mar 8 2021 12:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.47250 * 2 1 4 4 C 1.50705 * 109.46818 * 240.00138 * 2 1 3 5 5 C 1.33385 * 125.20371 * 299.99763 * 4 2 1 6 6 C 1.38427 * 114.91751 * 180.02562 * 5 4 2 7 7 S 1.76199 * 122.53683 * 179.97438 * 6 5 4 8 8 O 1.42097 * 106.40354 * 203.53857 * 7 6 5 9 9 O 1.42107 * 106.40384 * 336.46059 * 7 6 5 10 10 N 1.65607 * 107.21942 * 89.99835 * 7 6 5 11 11 C 1.46498 * 119.99651 * 65.00149 * 10 7 6 12 12 C 1.53003 * 109.46788 * 165.00022 * 11 10 7 13 13 H 1.08997 * 112.84634 * 45.33321 * 12 11 10 14 14 C 1.53784 * 113.61226 * 176.52508 * 12 11 10 15 15 C 1.53782 * 87.07877 * 89.11593 * 14 12 11 16 16 O 1.42898 * 113.61746 * 270.88300 * 15 14 12 17 17 C 1.53002 * 113.61173 * 140.06348 * 15 14 12 18 18 F 1.39901 * 109.47171 * 60.00147 * 17 15 14 19 19 F 1.39903 * 109.46902 * 180.02562 * 17 15 14 20 20 F 1.39898 * 109.47253 * 299.99717 * 17 15 14 21 21 C 1.53774 * 113.61440 * 274.13099 * 12 11 10 22 22 C 1.33387 * 114.92332 * 0.24816 * 6 5 4 23 23 S 1.75887 * 109.59302 * 359.63540 * 22 6 5 24 24 H 0.96704 * 114.00088 * 59.99684 * 1 2 3 25 25 H 1.08998 * 109.47368 * 120.00610 * 2 1 3 26 26 H 1.48504 * 110.00024 * 298.68634 * 3 2 1 27 27 H 1.48495 * 109.99825 * 59.99940 * 3 2 1 28 28 H 1.07993 * 122.54220 * 0.05714 * 5 4 2 29 29 H 0.96995 * 119.99966 * 245.00186 * 10 7 6 30 30 H 1.08998 * 109.46903 * 284.99521 * 11 10 7 31 31 H 1.08992 * 109.47457 * 44.99877 * 11 10 7 32 32 H 1.08997 * 113.61126 * 203.66285 * 14 12 11 33 33 H 1.09001 * 113.61415 * 334.48354 * 14 12 11 34 34 H 0.96692 * 114.00231 * 180.02562 * 16 15 14 35 35 H 1.09002 * 113.61680 * 25.43942 * 21 12 11 36 36 H 1.09009 * 113.61168 * 156.33340 * 21 12 11 37 37 H 1.08002 * 125.20394 * 179.76033 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6738 -1.9811 -1.5437 6 6 2.2447 -2.4174 -2.7270 7 16 2.0353 -4.0591 -3.3314 8 8 3.1382 -4.3142 -4.1903 9 8 1.7260 -4.8658 -2.2031 10 7 0.6855 -4.0599 -4.2909 11 6 0.6695 -3.2835 -5.5331 12 6 -0.5061 -3.7355 -6.4018 13 1 -1.4327 -3.8422 -5.8377 14 6 -0.6636 -2.9216 -7.6971 15 6 0.2838 -3.9371 -8.3574 16 8 1.6649 -3.5873 -8.2470 17 6 -0.1211 -4.3156 -9.7835 18 9 -0.1292 -3.1694 -10.5857 19 9 0.7947 -5.2393 -10.2986 20 9 -1.3990 -4.8845 -9.7700 21 6 -0.1840 -4.9470 -7.2924 22 6 2.9701 -1.5024 -3.3719 23 16 2.9473 0.0092 -2.4729 24 1 -0.3933 0.4418 -0.7650 25 1 1.7924 -0.5139 0.8899 26 1 1.5878 2.4586 -1.2242 27 1 1.5615 2.4678 1.2085 28 1 1.0656 -2.6210 -0.9217 29 1 -0.0944 -4.5743 -4.0303 30 1 0.5618 -2.2246 -5.2984 31 1 1.6027 -3.4428 -6.0732 32 1 -1.6748 -2.9394 -8.1036 33 1 -0.2508 -1.9148 -7.6330 34 1 2.2657 -4.2220 -8.6607 35 1 0.6171 -5.5750 -6.9023 36 1 -1.0643 -5.5176 -7.5885 37 1 3.4900 -1.6644 -4.3046 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17664670_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:10 Heat of formation + Delta-G solvation = -233.365807 kcal Electronic energy + Delta-G solvation = -30467.091430 eV Core-core repulsion = 25437.357680 eV Total energy + Delta-G solvation = -5029.733750 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.035 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -51.24023 -48.78855 -48.69775 -41.34421 -39.57449 -38.25417 -37.70768 -36.99045 -36.86823 -35.30971 -31.90075 -29.80004 -27.36275 -27.29216 -26.73801 -24.96721 -23.60645 -21.53401 -20.91778 -20.38889 -19.92633 -19.52586 -19.42688 -19.23209 -18.43553 -17.99935 -17.72783 -17.36443 -17.20107 -16.48352 -16.29307 -16.13578 -15.76239 -15.58463 -15.53374 -15.32395 -15.15348 -15.00672 -14.88222 -14.84963 -14.68403 -14.37811 -14.28275 -14.22398 -13.89457 -13.84272 -13.36892 -13.18848 -13.14028 -13.05131 -12.92297 -12.64776 -12.49783 -12.37715 -12.16886 -11.86253 -11.62868 -11.33359 -10.91097 -10.64713 -10.28305 -9.89755 -5.20851 -0.78581 -0.52331 0.26236 0.52613 0.95393 1.08526 1.40935 1.46361 1.76886 1.97146 2.26217 2.52134 2.56741 2.68580 2.76693 3.10407 3.14517 3.22525 3.33187 3.40304 3.53379 3.59663 3.77761 4.09115 4.14929 4.21114 4.25240 4.31307 4.36591 4.46664 4.53524 4.59907 4.62945 4.75809 4.85051 4.94180 5.02306 5.78718 6.01389 6.17368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.034 4.034 3 Si 0.652 3.348 4 C -0.228 4.228 5 C -0.043 4.043 6 C -0.687 4.687 7 S 2.710 3.290 8 O -0.950 6.950 9 O -0.951 6.951 10 N -1.115 6.115 11 C 0.126 3.874 12 C -0.105 4.105 13 H 0.102 0.898 14 C -0.111 4.111 15 C 0.060 3.940 16 O -0.509 6.509 17 C 0.433 3.567 18 F -0.175 7.175 19 F -0.182 7.182 20 F -0.175 7.175 21 C -0.155 4.155 22 C -0.086 4.086 23 S 0.160 5.840 24 H 0.377 0.623 25 H 0.130 0.870 26 H -0.240 1.240 27 H -0.233 1.233 28 H 0.157 0.843 29 H 0.420 0.580 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.394 0.606 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 3.165 -0.756 3.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.146 4.146 3 Si 0.551 3.449 4 C -0.345 4.345 5 C -0.071 4.071 6 C -0.787 4.787 7 S 2.797 3.203 8 O -0.940 6.940 9 O -0.941 6.941 10 N -0.876 5.876 11 C 0.000 4.000 12 C -0.125 4.125 13 H 0.120 0.880 14 C -0.148 4.148 15 C 0.017 3.983 16 O -0.317 6.317 17 C 0.378 3.622 18 F -0.156 7.156 19 F -0.164 7.164 20 F -0.156 7.156 21 C -0.193 4.193 22 C -0.225 4.225 23 S 0.424 5.576 24 H 0.225 0.775 25 H 0.148 0.852 26 H -0.164 1.164 27 H -0.156 1.156 28 H 0.175 0.825 29 H 0.255 0.745 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.245 0.755 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.315 5.079 0.002 5.089 hybrid contribution -1.909 -1.589 -0.881 2.635 sum -1.594 3.490 -0.879 3.936 Atomic orbital electron populations 1.86651 1.17053 1.79851 1.49212 1.24422 0.83920 1.10154 0.96137 0.95204 0.91686 0.74896 0.83157 1.25019 1.07799 0.98908 1.02822 1.19604 0.98431 0.94759 0.94338 1.30043 1.14239 1.26488 1.07904 1.01571 0.72897 0.72948 0.72915 1.93612 1.50704 1.83173 1.66512 1.93623 1.84018 1.65578 1.50889 1.55523 1.34788 1.62854 1.34395 1.21309 1.00400 0.94706 0.83584 1.22331 0.99375 0.95809 0.94971 0.88017 1.23152 0.98554 0.98966 0.94176 1.23726 0.86248 1.01077 0.87295 1.86581 1.12637 1.52496 1.79979 1.21294 0.75340 0.74990 0.90582 1.93228 1.96152 1.49917 1.76350 1.93194 1.66707 1.67421 1.89044 1.93188 1.40373 1.85280 1.96802 1.23864 1.03700 0.96893 0.94814 1.25957 0.98024 0.95727 1.02751 1.84412 1.46448 1.12320 1.14386 0.77472 0.85206 1.16365 1.15556 0.82545 0.74451 0.91170 0.87979 0.86902 0.88260 0.75475 0.88490 0.87265 0.79623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.01 12.86 -35.23 -0.45 -0.45 16 2 C -0.03 0.04 2.96 36.01 0.11 0.14 16 3 Si 0.65 -1.12 30.97 -169.99 -5.26 -6.39 16 4 C -0.23 0.13 5.72 -36.00 -0.21 -0.07 16 5 C -0.04 -0.01 9.56 -41.21 -0.39 -0.41 16 6 C -0.69 0.09 5.86 -41.21 -0.24 -0.15 16 7 S 2.71 1.44 5.80 -107.50 -0.62 0.82 16 8 O -0.95 -2.86 17.11 -57.17 -0.98 -3.84 16 9 O -0.95 -3.57 17.63 -57.17 -1.01 -4.58 16 10 N -1.11 2.88 6.00 -10.62 -0.06 2.82 16 11 C 0.13 -0.39 5.82 -4.04 -0.02 -0.42 16 12 C -0.11 0.42 3.96 -89.81 -0.36 0.07 16 13 H 0.10 -0.54 8.14 -51.93 -0.42 -0.96 16 14 C -0.11 0.39 6.86 -25.92 -0.18 0.22 16 15 C 0.06 -0.14 1.36 -89.67 -0.12 -0.26 16 16 O -0.51 1.14 11.42 -35.23 -0.40 0.73 16 17 C 0.43 -0.22 2.85 37.16 0.11 -0.11 16 18 F -0.18 -0.19 17.18 2.25 0.04 -0.15 16 19 F -0.18 -0.04 16.65 2.25 0.04 -0.01 16 20 F -0.17 0.01 15.77 2.25 0.04 0.05 16 21 C -0.16 0.52 6.93 -25.78 -0.18 0.34 16 22 C -0.09 0.11 10.70 29.04 0.31 0.42 16 23 S 0.16 -0.26 20.58 -107.50 -2.21 -2.47 16 24 H 0.38 -1.15 8.70 45.56 0.40 -0.76 16 25 H 0.13 -0.23 7.96 -51.93 -0.41 -0.64 16 26 H -0.24 0.06 7.11 56.52 0.40 0.46 16 27 H -0.23 -0.25 7.11 56.52 0.40 0.15 16 28 H 0.16 0.04 7.96 -52.49 -0.42 -0.38 16 29 H 0.42 -1.77 8.65 -34.47 -0.30 -2.07 16 30 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 31 H 0.10 -0.22 5.69 -51.93 -0.30 -0.52 16 32 H 0.11 -0.49 7.88 -51.93 -0.41 -0.90 16 33 H 0.10 -0.37 8.10 -51.93 -0.42 -0.79 16 34 H 0.39 -1.78 8.42 45.56 0.38 -1.40 16 35 H 0.10 -0.30 8.10 -51.93 -0.42 -0.73 16 36 H 0.11 -0.42 7.15 -51.92 -0.37 -0.79 16 37 H 0.19 -0.58 8.00 -52.49 -0.42 -1.00 16 LS Contribution 351.67 15.07 5.30 5.30 Total: 0.00 -9.93 351.67 -9.50 -19.43 By element: Atomic # 1 Polarization: -8.31 SS G_CDS: -2.73 Total: -11.04 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.18 Total: -0.24 kcal Atomic # 7 Polarization: 2.88 SS G_CDS: -0.06 Total: 2.82 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -2.84 Total: -8.13 kcal Atomic # 9 Polarization: -0.21 SS G_CDS: 0.11 Total: -0.10 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.26 Total: -6.39 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.84 Total: -1.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -9.93 -9.50 -19.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.938 kcal (2) G-P(sol) polarization free energy of solvation -9.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds