Wall clock time and date at job start Mon Mar 8 2021 12:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86303 * 109.47250 * 2 1 4 4 C 1.50705 * 109.46818 * 240.00138 * 2 1 3 5 5 C 1.33385 * 125.20371 * 299.99763 * 4 2 1 6 6 C 1.38427 * 114.91751 * 180.02562 * 5 4 2 7 7 S 1.76199 * 122.53683 * 179.97438 * 6 5 4 8 8 O 1.42097 * 106.40354 * 203.53857 * 7 6 5 9 9 O 1.42107 * 106.40384 * 336.46059 * 7 6 5 10 10 N 1.65607 * 107.21942 * 89.99835 * 7 6 5 11 11 C 1.46498 * 119.99651 * 65.00149 * 10 7 6 12 12 C 1.53003 * 109.46788 * 165.00022 * 11 10 7 13 13 H 1.08997 * 112.84634 * 45.33321 * 12 11 10 14 14 C 1.53784 * 113.61226 * 176.52508 * 12 11 10 15 15 C 1.53782 * 87.07877 * 89.11593 * 14 12 11 16 16 O 1.42898 * 113.61746 * 270.88300 * 15 14 12 17 17 C 1.53002 * 113.61173 * 140.06348 * 15 14 12 18 18 F 1.39901 * 109.47171 * 60.00147 * 17 15 14 19 19 F 1.39903 * 109.46902 * 180.02562 * 17 15 14 20 20 F 1.39898 * 109.47253 * 299.99717 * 17 15 14 21 21 C 1.53774 * 113.61440 * 274.13099 * 12 11 10 22 22 C 1.33387 * 114.92332 * 0.24816 * 6 5 4 23 23 S 1.75887 * 109.59302 * 359.63540 * 22 6 5 24 24 H 0.96704 * 114.00088 * 59.99684 * 1 2 3 25 25 H 1.08998 * 109.47368 * 120.00610 * 2 1 3 26 26 H 1.48504 * 110.00024 * 298.68634 * 3 2 1 27 27 H 1.48495 * 109.99825 * 59.99940 * 3 2 1 28 28 H 1.07993 * 122.54220 * 0.05714 * 5 4 2 29 29 H 0.96995 * 119.99966 * 245.00186 * 10 7 6 30 30 H 1.08998 * 109.46903 * 284.99521 * 11 10 7 31 31 H 1.08992 * 109.47457 * 44.99877 * 11 10 7 32 32 H 1.08997 * 113.61126 * 203.66285 * 14 12 11 33 33 H 1.09001 * 113.61415 * 334.48354 * 14 12 11 34 34 H 0.96692 * 114.00231 * 180.02562 * 16 15 14 35 35 H 1.09002 * 113.61680 * 25.43942 * 21 12 11 36 36 H 1.09009 * 113.61168 * 156.33340 * 21 12 11 37 37 H 1.08002 * 125.20394 * 179.76033 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6738 -1.9811 -1.5437 6 6 2.2447 -2.4174 -2.7270 7 16 2.0353 -4.0591 -3.3314 8 8 3.1382 -4.3142 -4.1903 9 8 1.7260 -4.8658 -2.2031 10 7 0.6855 -4.0599 -4.2909 11 6 0.6695 -3.2835 -5.5331 12 6 -0.5061 -3.7355 -6.4018 13 1 -1.4327 -3.8422 -5.8377 14 6 -0.6636 -2.9216 -7.6971 15 6 0.2838 -3.9371 -8.3574 16 8 1.6649 -3.5873 -8.2470 17 6 -0.1211 -4.3156 -9.7835 18 9 -0.1292 -3.1694 -10.5857 19 9 0.7947 -5.2393 -10.2986 20 9 -1.3990 -4.8845 -9.7700 21 6 -0.1840 -4.9470 -7.2924 22 6 2.9701 -1.5024 -3.3719 23 16 2.9473 0.0092 -2.4729 24 1 -0.3933 0.4418 -0.7650 25 1 1.7924 -0.5139 0.8899 26 1 1.5878 2.4586 -1.2242 27 1 1.5615 2.4678 1.2085 28 1 1.0656 -2.6210 -0.9217 29 1 -0.0944 -4.5743 -4.0303 30 1 0.5618 -2.2246 -5.2984 31 1 1.6027 -3.4428 -6.0732 32 1 -1.6748 -2.9394 -8.1036 33 1 -0.2508 -1.9148 -7.6330 34 1 2.2657 -4.2220 -8.6607 35 1 0.6171 -5.5750 -6.9023 36 1 -1.0643 -5.5176 -7.5885 37 1 3.4900 -1.6644 -4.3046 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664670_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:09 Heat of formation + Delta-G solvation = -238.608488 kcal Electronic energy + Delta-G solvation = -30467.318770 eV Core-core repulsion = 25437.357680 eV Total energy + Delta-G solvation = -5029.961089 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.035 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.21748 -48.76497 -48.70226 -41.08793 -39.51022 -38.39156 -37.65072 -37.01890 -36.78194 -35.11559 -31.83145 -29.63503 -27.22275 -27.07174 -26.56958 -24.91174 -23.41931 -21.48405 -20.71879 -20.28392 -19.84949 -19.50144 -19.37218 -19.15296 -18.41518 -17.94545 -17.68888 -17.19195 -17.02797 -16.40471 -16.16012 -15.99085 -15.70501 -15.56951 -15.50385 -15.22237 -15.14623 -14.94405 -14.88066 -14.83835 -14.54311 -14.26068 -14.16608 -14.09428 -13.84924 -13.73467 -13.34796 -13.22110 -13.08942 -13.05426 -12.92642 -12.50181 -12.38456 -12.31662 -11.93719 -11.64557 -11.53903 -11.11485 -10.83386 -10.45515 -10.19951 -9.80138 -5.09005 -0.77321 -0.45979 0.35693 0.60524 0.98848 1.18292 1.49701 1.56879 1.84742 2.04770 2.49676 2.62943 2.68078 2.72975 2.95879 3.20438 3.32108 3.42936 3.47056 3.56089 3.64814 3.79614 3.92430 4.22288 4.38149 4.47920 4.50820 4.55288 4.57194 4.65837 4.77560 4.83454 4.91601 4.92457 5.02974 5.06068 5.23844 6.04894 6.32157 6.38258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.042 4.042 3 Si 0.720 3.280 4 C -0.233 4.233 5 C -0.057 4.057 6 C -0.693 4.693 7 S 2.726 3.274 8 O -0.978 6.978 9 O -0.988 6.988 10 N -1.103 6.103 11 C 0.119 3.881 12 C -0.098 4.098 13 H 0.120 0.880 14 C -0.110 4.110 15 C 0.059 3.941 16 O -0.517 6.517 17 C 0.428 3.572 18 F -0.187 7.187 19 F -0.189 7.189 20 F -0.178 7.178 21 C -0.156 4.156 22 C -0.087 4.087 23 S 0.191 5.809 24 H 0.389 0.611 25 H 0.134 0.866 26 H -0.255 1.255 27 H -0.274 1.274 28 H 0.150 0.850 29 H 0.429 0.571 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.401 0.599 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 3.929 -1.003 4.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.153 4.153 3 Si 0.621 3.379 4 C -0.350 4.350 5 C -0.086 4.086 6 C -0.794 4.794 7 S 2.815 3.185 8 O -0.968 6.968 9 O -0.979 6.979 10 N -0.866 5.866 11 C -0.006 4.006 12 C -0.118 4.118 13 H 0.138 0.862 14 C -0.148 4.148 15 C 0.015 3.985 16 O -0.326 6.326 17 C 0.374 3.626 18 F -0.168 7.168 19 F -0.171 7.171 20 F -0.160 7.160 21 C -0.193 4.193 22 C -0.226 4.226 23 S 0.455 5.545 24 H 0.239 0.761 25 H 0.152 0.848 26 H -0.180 1.180 27 H -0.199 1.199 28 H 0.168 0.832 29 H 0.266 0.734 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.121 0.879 34 H 0.254 0.746 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.143 5.805 -0.263 5.812 hybrid contribution -1.876 -1.773 -0.834 2.712 sum -1.733 4.032 -1.097 4.523 Atomic orbital electron populations 1.86618 1.17672 1.80268 1.50162 1.24616 0.83579 1.10831 0.96284 0.94414 0.90648 0.72831 0.79997 1.25115 1.07885 0.98811 1.03235 1.19642 0.99037 0.95188 0.94692 1.29823 1.15305 1.26073 1.08217 1.00756 0.72806 0.72810 0.72152 1.93572 1.52316 1.83910 1.67018 1.93569 1.84613 1.67200 1.52482 1.55216 1.34204 1.63088 1.34138 1.21456 1.00514 0.95487 0.83145 1.22299 0.99665 0.95087 0.94729 0.86220 1.23239 0.98686 0.98876 0.93973 1.23885 0.86413 1.02125 0.86033 1.86563 1.12898 1.53101 1.80043 1.21691 0.75103 0.74489 0.91358 1.93199 1.96196 1.50516 1.76883 1.93175 1.66946 1.67689 1.89289 1.93174 1.40634 1.85321 1.96851 1.23914 1.03797 0.97049 0.94541 1.26258 0.97353 0.95726 1.03284 1.84308 1.45422 1.11431 1.13316 0.76130 0.84801 1.17957 1.19920 0.83192 0.73371 0.89646 0.88849 0.86042 0.87932 0.74600 0.88801 0.86709 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.01 12.86 -148.98 -1.92 -1.93 16 2 C -0.04 0.09 2.96 71.24 0.21 0.31 16 3 Si 0.72 -2.65 30.97 68.60 2.12 -0.53 16 4 C -0.23 0.35 5.72 24.59 0.14 0.49 16 5 C -0.06 -0.04 9.56 21.22 0.20 0.16 16 6 C -0.69 0.18 5.86 21.22 0.12 0.31 16 7 S 2.73 4.55 5.80 -56.49 -0.33 4.23 16 8 O -0.98 -6.52 17.11 -128.00 -2.19 -8.71 16 9 O -0.99 -8.65 17.63 -128.00 -2.26 -10.91 16 10 N -1.10 5.89 6.00 -187.50 -1.12 4.77 16 11 C 0.12 -0.84 5.82 86.38 0.50 -0.33 16 12 C -0.10 0.89 3.96 -10.27 -0.04 0.85 16 13 H 0.12 -1.48 8.14 -2.39 -0.02 -1.50 16 14 C -0.11 0.88 6.86 31.12 0.21 1.09 16 15 C 0.06 -0.29 1.36 -10.18 -0.01 -0.30 16 16 O -0.52 2.28 11.42 -148.98 -1.70 0.58 16 17 C 0.43 -0.32 2.85 71.98 0.21 -0.12 16 18 F -0.19 -0.47 17.18 44.97 0.77 0.31 16 19 F -0.19 -0.20 16.65 44.97 0.75 0.55 16 20 F -0.18 0.02 15.77 44.97 0.71 0.73 16 21 C -0.16 1.10 6.93 31.21 0.22 1.32 16 22 C -0.09 0.28 10.70 66.72 0.71 0.99 16 23 S 0.19 -0.83 20.58 -56.49 -1.16 -1.99 16 24 H 0.39 -2.44 8.70 -74.05 -0.64 -3.08 16 25 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 26 H -0.25 0.32 7.11 99.48 0.71 1.03 16 27 H -0.27 -0.84 7.11 99.48 0.71 -0.14 16 28 H 0.15 0.23 7.96 -2.91 -0.02 0.21 16 29 H 0.43 -3.74 8.65 -96.75 -0.84 -4.57 16 30 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.09 -0.44 5.69 -2.39 -0.01 -0.45 16 32 H 0.12 -1.18 7.88 -2.39 -0.02 -1.19 16 33 H 0.10 -0.87 8.10 -2.39 -0.02 -0.89 16 34 H 0.40 -3.44 8.42 -74.06 -0.62 -4.06 16 35 H 0.09 -0.59 8.10 -2.39 -0.02 -0.61 16 36 H 0.11 -0.94 7.15 -2.38 -0.02 -0.95 16 37 H 0.20 -1.48 8.00 -2.91 -0.02 -1.51 16 Total: 0.00 -22.48 351.67 -4.73 -27.22 By element: Atomic # 1 Polarization: -18.18 SS G_CDS: -0.88 Total: -19.07 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 2.48 Total: 4.77 kcal Atomic # 7 Polarization: 5.89 SS G_CDS: -1.12 Total: 4.77 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -8.06 Total: -20.97 kcal Atomic # 9 Polarization: -0.65 SS G_CDS: 2.23 Total: 1.58 kcal Atomic # 14 Polarization: -2.65 SS G_CDS: 2.12 Total: -0.53 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.49 Total: 2.23 kcal Total: -22.48 -4.73 -27.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.393 kcal (2) G-P(sol) polarization free energy of solvation -22.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds