Wall clock time and date at job start Mon Mar 8 2021 12:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.20103 * 2 1 4 4 C 1.50698 * 122.54347 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.47067 * 316.35572 * 4 3 2 6 6 Si 1.86307 * 109.47261 * 76.35368 * 4 3 2 7 7 C 1.38422 * 114.92179 * 180.02562 * 3 2 1 8 8 S 1.76196 * 122.54243 * 179.97438 * 7 3 2 9 9 O 1.42104 * 106.40462 * 162.42893 * 8 7 3 10 10 O 1.42102 * 106.40135 * 29.51256 * 8 7 3 11 11 N 1.65601 * 107.22082 * 275.97025 * 8 7 3 12 12 C 1.46499 * 119.99731 * 65.00022 * 11 8 7 13 13 C 1.53004 * 109.47068 * 165.00127 * 12 11 8 14 14 H 1.08998 * 112.85041 * 43.79567 * 13 12 11 15 15 C 1.53773 * 113.61518 * 174.99908 * 13 12 11 16 16 C 1.53784 * 87.08509 * 89.11417 * 15 13 12 17 17 O 1.42898 * 113.61399 * 270.88479 * 16 15 13 18 18 C 1.52999 * 113.61690 * 140.06300 * 16 15 13 19 19 F 1.39899 * 109.46726 * 60.00311 * 18 16 15 20 20 F 1.39894 * 109.47094 * 180.02562 * 18 16 15 21 21 F 1.39902 * 109.47097 * 300.00078 * 18 16 15 22 22 C 1.53787 * 113.61018 * 272.49759 * 13 12 11 23 23 C 1.33391 * 114.92041 * 0.25127 * 7 3 2 24 24 C 1.50697 * 125.20563 * 179.75516 * 23 7 3 25 25 S 1.75880 * 125.20502 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.46645 * 88.05163 * 1 2 3 27 27 H 1.09000 * 109.47093 * 208.04703 * 1 2 3 28 28 H 1.08996 * 109.47594 * 328.05669 * 1 2 3 29 29 H 1.08999 * 109.47569 * 196.35740 * 4 3 2 30 30 H 0.96695 * 114.00055 * 293.42128 * 5 4 3 31 31 H 1.48499 * 109.99990 * 305.18884 * 6 4 3 32 32 H 1.48498 * 109.99507 * 66.50838 * 6 4 3 33 33 H 0.96998 * 119.99983 * 244.71803 * 11 8 7 34 34 H 1.09001 * 109.47221 * 284.99732 * 12 11 8 35 35 H 1.09004 * 109.47330 * 44.99979 * 12 11 8 36 36 H 1.09001 * 113.61757 * 203.66236 * 15 13 12 37 37 H 1.09008 * 113.61483 * 334.48248 * 15 13 12 38 38 H 0.96704 * 113.99668 * 179.97438 * 17 16 15 39 39 H 1.08988 * 113.61637 * 25.42947 * 22 13 12 40 40 H 1.09000 * 113.61182 * 156.33844 * 22 13 12 41 41 H 1.09003 * 109.47638 * 83.89619 * 24 23 7 42 42 H 1.09004 * 109.47535 * 203.89942 * 24 23 7 43 43 H 1.09003 * 109.47369 * 323.89385 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 0.0006 5 8 0.6220 2.5565 -0.9289 6 14 1.0870 2.9021 1.7078 7 6 3.6379 0.8429 -0.0006 8 16 4.8355 2.1353 -0.0013 9 8 6.0617 1.5464 0.4098 10 8 4.2384 3.2361 0.6703 11 7 5.0474 2.6064 -1.5747 12 6 3.9420 3.2277 -2.3084 13 6 4.4823 3.8973 -3.5737 14 1 5.2054 3.2781 -4.1044 15 6 3.3841 4.4767 -4.4808 16 6 3.5130 5.7787 -3.6726 17 8 2.6610 5.8277 -2.5265 18 6 3.4289 7.0432 -4.5299 19 9 2.1941 7.0800 -5.1866 20 9 3.5562 8.1707 -3.7116 21 9 4.4600 7.0350 -5.4755 22 6 4.9530 5.3444 -3.3517 23 6 3.9750 -0.4476 -0.0063 24 6 5.3860 -0.9770 -0.0134 25 16 2.5209 -1.4371 -0.0006 26 1 -0.3633 0.0349 -1.0271 27 1 -0.3633 -0.9070 0.4832 28 1 -0.3634 0.8720 0.5437 29 1 2.4800 3.1945 -0.2889 30 1 0.8885 2.4499 -1.8523 31 1 0.1214 1.8705 2.1647 32 1 2.2279 2.9848 2.6548 33 1 5.9046 2.4748 -2.0092 34 1 3.2142 2.4645 -2.5838 35 1 3.4625 3.9763 -1.6776 36 1 3.6870 4.5780 -5.5230 37 1 2.4184 3.9842 -4.3666 38 1 2.7379 6.6441 -2.0139 39 1 5.2535 5.5532 -2.3251 40 1 5.6848 5.6828 -4.0853 41 1 5.7684 -1.0059 1.0069 42 1 5.3947 -1.9828 -0.4333 43 1 6.0156 -0.3251 -0.6191 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17664670_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:14 Heat of formation + Delta-G solvation = -236.990432 kcal Electronic energy + Delta-G solvation = -36684.924439 eV Core-core repulsion = 31343.958276 eV Total energy + Delta-G solvation = -5340.966163 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.066 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.22443 -48.77454 -48.67794 -41.38735 -40.30209 -38.55235 -37.10969 -37.02032 -36.94011 -35.35479 -34.15140 -30.91109 -29.82060 -28.02962 -27.36887 -26.77932 -25.91350 -23.62623 -23.24502 -21.13086 -20.66519 -20.24818 -19.86181 -19.51139 -19.43346 -19.00650 -18.48227 -18.08556 -17.62869 -17.28225 -16.91799 -16.33430 -16.27686 -16.08230 -15.72224 -15.53320 -15.39112 -15.26853 -15.13648 -15.02681 -14.87983 -14.85809 -14.83612 -14.67046 -14.42949 -14.32775 -14.26688 -13.90488 -13.81171 -13.51181 -13.38681 -13.35930 -13.23141 -13.13529 -12.93580 -12.72638 -12.64902 -12.56692 -12.22194 -11.88437 -11.73655 -11.70992 -11.34211 -11.32984 -10.95894 -10.70106 -10.04115 -9.50101 -4.75118 -0.82929 -0.45750 0.33952 0.68320 0.82519 1.47798 1.58385 1.90057 1.94358 2.10770 2.27114 2.53725 2.57199 2.60448 2.76917 3.06736 3.17361 3.31258 3.39787 3.40945 3.52247 3.69617 3.77247 3.99793 4.00864 4.10476 4.17652 4.22116 4.24214 4.27113 4.41998 4.43340 4.51729 4.53404 4.60563 4.60754 4.62907 4.72976 4.87027 4.90600 5.01356 5.06877 5.21885 5.71600 6.04049 6.53002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.164 4.164 3 C -0.083 4.083 4 C -0.079 4.079 5 O -0.526 6.526 6 Si 0.756 3.244 7 C -0.690 4.690 8 S 2.704 3.296 9 O -0.951 6.951 10 O -0.944 6.944 11 N -1.115 6.115 12 C 0.124 3.876 13 C -0.105 4.105 14 H 0.101 0.899 15 C -0.110 4.110 16 C 0.061 3.939 17 O -0.507 6.507 18 C 0.433 3.567 19 F -0.174 7.174 20 F -0.182 7.182 21 F -0.176 7.176 22 C -0.156 4.156 23 C -0.049 4.049 24 C -0.110 4.110 25 S 0.152 5.848 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.360 0.640 31 H -0.256 1.256 32 H -0.245 1.245 33 H 0.420 0.580 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.395 0.605 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -1.275 -3.740 3.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.282 4.282 3 C -0.093 4.093 4 C -0.189 4.189 5 O -0.331 6.331 6 Si 0.653 3.347 7 C -0.789 4.789 8 S 2.792 3.208 9 O -0.941 6.941 10 O -0.934 6.934 11 N -0.876 5.876 12 C -0.002 4.002 13 C -0.125 4.125 14 H 0.120 0.880 15 C -0.148 4.148 16 C 0.017 3.983 17 O -0.315 6.315 18 C 0.378 3.622 19 F -0.156 7.156 20 F -0.163 7.163 21 F -0.157 7.157 22 C -0.194 4.194 23 C -0.171 4.171 24 C -0.169 4.169 25 S 0.418 5.582 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.207 0.793 31 H -0.181 1.181 32 H -0.169 1.169 33 H 0.255 0.745 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.246 0.754 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.459 -3.224 -1.771 3.707 hybrid contribution 1.244 0.685 -1.635 2.165 sum 0.784 -2.540 -3.406 4.320 Atomic orbital electron populations 1.20498 0.86554 1.03422 1.03733 1.24471 1.00686 0.94473 1.08569 1.18647 0.90130 0.97324 1.03238 1.25555 0.94675 0.91845 1.06817 1.86800 1.32458 1.95267 1.18544 0.93365 0.81983 0.88015 0.71352 1.29531 1.11877 1.13474 1.24011 1.01652 0.73138 0.73570 0.72466 1.93613 1.42353 1.78318 1.79839 1.93559 1.78067 1.50525 1.71265 1.55527 1.21730 1.76613 1.33700 1.21432 0.87882 0.97354 0.93491 1.22333 0.98499 0.95894 0.95793 0.88049 1.23155 1.01423 0.91537 0.98705 1.23645 0.94871 0.91212 0.88528 1.86599 1.62920 1.44710 1.37243 1.21283 0.74045 0.86655 0.80207 1.93231 1.43317 1.96775 1.82253 1.93193 1.95608 1.55321 1.72214 1.93187 1.59249 1.96667 1.66620 1.23830 0.94351 0.96052 1.05145 1.24595 1.00763 0.94995 0.96702 1.20913 0.88128 1.02220 1.05606 1.84455 0.95328 1.08929 1.69462 0.89807 0.91675 0.89216 0.88843 0.79299 1.18140 1.16874 0.74475 0.91265 0.87757 0.86896 0.88158 0.75416 0.88521 0.87249 0.88131 0.90085 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.05 8.94 36.00 0.32 0.28 16 2 C -0.16 -0.27 6.17 -36.00 -0.22 -0.49 16 3 C -0.08 -0.16 4.21 -106.25 -0.45 -0.60 16 4 C -0.08 -0.09 2.13 36.00 0.08 -0.02 16 5 O -0.53 0.20 10.78 -35.23 -0.38 -0.18 16 6 Si 0.76 1.68 30.59 -169.99 -5.20 -3.53 16 7 C -0.69 -1.19 5.86 -41.21 -0.24 -1.43 16 8 S 2.70 3.83 5.33 -107.50 -0.57 3.26 16 9 O -0.95 -3.13 14.87 -57.17 -0.85 -3.98 16 10 O -0.94 -3.37 13.74 -57.17 -0.79 -4.15 16 11 N -1.11 2.62 6.00 -10.61 -0.06 2.56 16 12 C 0.12 -0.38 4.94 -4.04 -0.02 -0.40 16 13 C -0.11 0.45 3.98 -89.81 -0.36 0.10 16 14 H 0.10 -0.56 8.12 -51.93 -0.42 -0.98 16 15 C -0.11 0.44 6.86 -25.92 -0.18 0.26 16 16 C 0.06 -0.17 1.36 -89.80 -0.12 -0.29 16 17 O -0.51 1.40 11.44 -35.23 -0.40 0.99 16 18 C 0.43 -0.36 2.85 37.16 0.11 -0.25 16 19 F -0.17 -0.14 17.18 2.25 0.04 -0.10 16 20 F -0.18 0.01 16.65 2.25 0.04 0.05 16 21 F -0.18 0.06 15.76 2.25 0.04 0.10 16 22 C -0.16 0.57 6.91 -25.91 -0.18 0.39 16 23 C -0.05 -0.06 6.50 -36.00 -0.23 -0.29 16 24 C -0.11 0.04 8.87 36.00 0.32 0.36 16 25 S 0.15 0.12 23.31 -107.50 -2.51 -2.39 16 26 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 27 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 28 H 0.09 0.13 4.71 -51.93 -0.24 -0.12 16 29 H 0.09 0.05 2.77 -51.93 -0.14 -0.10 16 30 H 0.36 -1.17 9.12 45.56 0.42 -0.75 16 31 H -0.26 -0.89 6.23 56.52 0.35 -0.54 16 32 H -0.24 -1.23 7.11 56.52 0.40 -0.83 16 33 H 0.42 -1.83 8.64 -34.47 -0.30 -2.13 16 34 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 35 H 0.10 -0.23 4.33 -51.93 -0.22 -0.46 16 36 H 0.11 -0.52 7.88 -51.93 -0.41 -0.93 16 37 H 0.10 -0.43 8.10 -51.92 -0.42 -0.85 16 38 H 0.39 -1.97 8.42 45.56 0.38 -1.58 16 39 H 0.10 -0.33 8.10 -51.94 -0.42 -0.76 16 40 H 0.11 -0.45 7.14 -51.93 -0.37 -0.82 16 41 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 42 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 43 H 0.10 -0.09 6.47 -51.93 -0.34 -0.42 16 LS Contribution 373.09 15.07 5.62 5.62 Total: 0.00 -8.01 373.09 -10.06 -18.07 By element: Atomic # 1 Polarization: -10.08 SS G_CDS: -3.85 Total: -13.93 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.18 Total: -2.39 kcal Atomic # 7 Polarization: 2.62 SS G_CDS: -0.06 Total: 2.56 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -2.42 Total: -7.32 kcal Atomic # 9 Polarization: -0.06 SS G_CDS: 0.11 Total: 0.05 kcal Atomic # 14 Polarization: 1.68 SS G_CDS: -5.20 Total: -3.53 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -3.08 Total: 0.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -8.01 -10.06 -18.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.925 kcal (2) G-P(sol) polarization free energy of solvation -8.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds