Wall clock time and date at job start Mon Mar 8 2021 12:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.20103 * 2 1 4 4 C 1.50698 * 122.54347 * 0.02562 * 3 2 1 5 5 O 1.42905 * 109.47067 * 316.35572 * 4 3 2 6 6 Si 1.86307 * 109.47261 * 76.35368 * 4 3 2 7 7 C 1.38422 * 114.92179 * 180.02562 * 3 2 1 8 8 S 1.76196 * 122.54243 * 179.97438 * 7 3 2 9 9 O 1.42104 * 106.40462 * 162.42893 * 8 7 3 10 10 O 1.42102 * 106.40135 * 29.51256 * 8 7 3 11 11 N 1.65601 * 107.22082 * 275.97025 * 8 7 3 12 12 C 1.46499 * 119.99731 * 65.00022 * 11 8 7 13 13 C 1.53004 * 109.47068 * 165.00127 * 12 11 8 14 14 H 1.08998 * 112.85041 * 43.79567 * 13 12 11 15 15 C 1.53773 * 113.61518 * 174.99908 * 13 12 11 16 16 C 1.53784 * 87.08509 * 89.11417 * 15 13 12 17 17 O 1.42898 * 113.61399 * 270.88479 * 16 15 13 18 18 C 1.52999 * 113.61690 * 140.06300 * 16 15 13 19 19 F 1.39899 * 109.46726 * 60.00311 * 18 16 15 20 20 F 1.39894 * 109.47094 * 180.02562 * 18 16 15 21 21 F 1.39902 * 109.47097 * 300.00078 * 18 16 15 22 22 C 1.53787 * 113.61018 * 272.49759 * 13 12 11 23 23 C 1.33391 * 114.92041 * 0.25127 * 7 3 2 24 24 C 1.50697 * 125.20563 * 179.75516 * 23 7 3 25 25 S 1.75880 * 125.20502 * 180.02562 * 2 1 3 26 26 H 1.09005 * 109.46645 * 88.05163 * 1 2 3 27 27 H 1.09000 * 109.47093 * 208.04703 * 1 2 3 28 28 H 1.08996 * 109.47594 * 328.05669 * 1 2 3 29 29 H 1.08999 * 109.47569 * 196.35740 * 4 3 2 30 30 H 0.96695 * 114.00055 * 293.42128 * 5 4 3 31 31 H 1.48499 * 109.99990 * 305.18884 * 6 4 3 32 32 H 1.48498 * 109.99507 * 66.50838 * 6 4 3 33 33 H 0.96998 * 119.99983 * 244.71803 * 11 8 7 34 34 H 1.09001 * 109.47221 * 284.99732 * 12 11 8 35 35 H 1.09004 * 109.47330 * 44.99979 * 12 11 8 36 36 H 1.09001 * 113.61757 * 203.66236 * 15 13 12 37 37 H 1.09008 * 113.61483 * 334.48248 * 15 13 12 38 38 H 0.96704 * 113.99668 * 179.97438 * 17 16 15 39 39 H 1.08988 * 113.61637 * 25.42947 * 22 13 12 40 40 H 1.09000 * 113.61182 * 156.33844 * 22 13 12 41 41 H 1.09003 * 109.47638 * 83.89619 * 24 23 7 42 42 H 1.09004 * 109.47535 * 203.89942 * 24 23 7 43 43 H 1.09003 * 109.47369 * 323.89385 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 0.0006 5 8 0.6220 2.5565 -0.9289 6 14 1.0870 2.9021 1.7078 7 6 3.6379 0.8429 -0.0006 8 16 4.8355 2.1353 -0.0013 9 8 6.0617 1.5464 0.4098 10 8 4.2384 3.2361 0.6703 11 7 5.0474 2.6064 -1.5747 12 6 3.9420 3.2277 -2.3084 13 6 4.4823 3.8973 -3.5737 14 1 5.2054 3.2781 -4.1044 15 6 3.3841 4.4767 -4.4808 16 6 3.5130 5.7787 -3.6726 17 8 2.6610 5.8277 -2.5265 18 6 3.4289 7.0432 -4.5299 19 9 2.1941 7.0800 -5.1866 20 9 3.5562 8.1707 -3.7116 21 9 4.4600 7.0350 -5.4755 22 6 4.9530 5.3444 -3.3517 23 6 3.9750 -0.4476 -0.0063 24 6 5.3860 -0.9770 -0.0134 25 16 2.5209 -1.4371 -0.0006 26 1 -0.3633 0.0349 -1.0271 27 1 -0.3633 -0.9070 0.4832 28 1 -0.3634 0.8720 0.5437 29 1 2.4800 3.1945 -0.2889 30 1 0.8885 2.4499 -1.8523 31 1 0.1214 1.8705 2.1647 32 1 2.2279 2.9848 2.6548 33 1 5.9046 2.4748 -2.0092 34 1 3.2142 2.4645 -2.5838 35 1 3.4625 3.9763 -1.6776 36 1 3.6870 4.5780 -5.5230 37 1 2.4184 3.9842 -4.3666 38 1 2.7379 6.6441 -2.0139 39 1 5.2535 5.5532 -2.3251 40 1 5.6848 5.6828 -4.0853 41 1 5.7684 -1.0059 1.0069 42 1 5.3947 -1.9828 -0.4333 43 1 6.0156 -0.3251 -0.6191 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664670_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:13 Heat of formation + Delta-G solvation = -238.762032 kcal Electronic energy + Delta-G solvation = -36685.001262 eV Core-core repulsion = 31343.958276 eV Total energy + Delta-G solvation = -5341.042985 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.066 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -51.17033 -48.72025 -48.65200 -41.10460 -40.35077 -38.69687 -37.15061 -37.10079 -36.77307 -35.14530 -34.17075 -30.92371 -29.63265 -28.05682 -27.05160 -26.59872 -25.96036 -23.41325 -23.28445 -21.01954 -20.57188 -20.17391 -19.82757 -19.45849 -19.36874 -18.99681 -18.50727 -18.10029 -17.55109 -17.02544 -16.91831 -16.38215 -16.17201 -15.95772 -15.65375 -15.48212 -15.39369 -15.20046 -15.09912 -15.08364 -14.90179 -14.83646 -14.80038 -14.52801 -14.31713 -14.27223 -14.16845 -13.96942 -13.75171 -13.55448 -13.48056 -13.36670 -13.09786 -13.05737 -12.97148 -12.78269 -12.64929 -12.34093 -12.01171 -11.98745 -11.79254 -11.55552 -11.40918 -11.08564 -10.98237 -10.51943 -10.09081 -9.56629 -4.97214 -0.88662 -0.52808 0.29269 0.61492 0.72237 1.44140 1.61860 1.68025 1.87733 1.94952 2.51397 2.56479 2.68190 2.77680 2.99807 3.08374 3.37411 3.42720 3.50304 3.59395 3.66701 3.77783 3.78599 3.97292 4.07295 4.17293 4.35049 4.42543 4.48176 4.52440 4.57701 4.60006 4.62537 4.64043 4.75056 4.85698 4.87141 4.94407 5.02038 5.02729 5.04024 5.17193 5.23115 5.99309 6.38854 6.71365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.176 4.176 3 C -0.093 4.093 4 C -0.072 4.072 5 O -0.527 6.527 6 Si 0.787 3.213 7 C -0.700 4.700 8 S 2.712 3.288 9 O -0.974 6.974 10 O -0.971 6.971 11 N -1.099 6.099 12 C 0.116 3.884 13 C -0.097 4.097 14 H 0.121 0.879 15 C -0.109 4.109 16 C 0.061 3.939 17 O -0.514 6.514 18 C 0.428 3.572 19 F -0.186 7.186 20 F -0.190 7.190 21 F -0.180 7.180 22 C -0.157 4.157 23 C -0.054 4.054 24 C -0.116 4.116 25 S 0.168 5.832 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.376 0.624 31 H -0.274 1.274 32 H -0.289 1.289 33 H 0.431 0.569 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.402 0.598 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -2.112 -5.221 5.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.294 4.294 3 C -0.104 4.104 4 C -0.184 4.184 5 O -0.333 6.333 6 Si 0.690 3.310 7 C -0.800 4.800 8 S 2.800 3.200 9 O -0.964 6.964 10 O -0.961 6.961 11 N -0.863 5.863 12 C -0.009 4.009 13 C -0.116 4.116 14 H 0.139 0.861 15 C -0.147 4.147 16 C 0.017 3.983 17 O -0.323 6.323 18 C 0.373 3.627 19 F -0.168 7.168 20 F -0.171 7.171 21 F -0.161 7.161 22 C -0.195 4.195 23 C -0.175 4.175 24 C -0.174 4.174 25 S 0.434 5.566 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.225 0.775 31 H -0.200 1.200 32 H -0.216 1.216 33 H 0.269 0.731 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.254 0.746 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.370 -4.046 -3.261 5.210 hybrid contribution 1.218 0.940 -1.158 1.926 sum 0.848 -3.106 -4.419 5.467 Atomic orbital electron populations 1.20537 0.85967 1.03199 1.04580 1.24706 1.01346 0.94891 1.08469 1.18766 0.90329 0.97620 1.03653 1.25311 0.94927 0.91837 1.06284 1.86750 1.31811 1.95208 1.19501 0.93003 0.79480 0.87164 0.71331 1.29558 1.11860 1.13808 1.24745 1.01172 0.72481 0.73117 0.73194 1.93577 1.43293 1.78646 1.80891 1.93528 1.78441 1.51498 1.72631 1.55189 1.22616 1.76116 1.32428 1.21605 0.87883 0.97700 0.93757 1.22278 0.98676 0.95545 0.95141 0.86144 1.23246 1.01873 0.90581 0.99017 1.23800 0.95544 0.90540 0.88427 1.86582 1.63129 1.45307 1.37272 1.21703 0.73451 0.87262 0.80248 1.93202 1.44112 1.96859 1.82578 1.93173 1.95604 1.55977 1.72359 1.93172 1.59337 1.96711 1.66883 1.23883 0.93891 0.96538 1.05146 1.24847 1.01584 0.94974 0.96101 1.21037 0.87298 1.03485 1.05619 1.84357 0.94843 1.08300 1.69101 0.88315 0.91143 0.90255 0.88156 0.77460 1.20032 1.21636 0.73104 0.89859 0.88605 0.86059 0.87593 0.74560 0.88835 0.86700 0.88567 0.88071 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.06 8.94 71.24 0.64 0.58 16 2 C -0.18 -0.54 6.17 24.59 0.15 -0.39 16 3 C -0.09 -0.36 4.21 -20.92 -0.09 -0.44 16 4 C -0.07 -0.18 2.13 71.24 0.15 -0.03 16 5 O -0.53 0.78 10.78 -148.98 -1.61 -0.82 16 6 Si 0.79 4.71 30.59 68.60 2.10 6.81 16 7 C -0.70 -2.50 5.86 21.22 0.12 -2.38 16 8 S 2.71 8.82 5.33 -56.49 -0.30 8.52 16 9 O -0.97 -6.95 14.87 -128.00 -1.90 -8.86 16 10 O -0.97 -8.02 13.74 -128.00 -1.76 -9.78 16 11 N -1.10 5.90 6.00 -187.48 -1.12 4.77 16 12 C 0.12 -0.83 4.94 86.38 0.43 -0.41 16 13 C -0.10 0.98 3.98 -10.27 -0.04 0.93 16 14 H 0.12 -1.63 8.12 -2.39 -0.02 -1.65 16 15 C -0.11 1.01 6.86 31.12 0.21 1.22 16 16 C 0.06 -0.36 1.36 -10.26 -0.01 -0.38 16 17 O -0.51 2.90 11.44 -148.98 -1.70 1.19 16 18 C 0.43 -0.66 2.85 71.98 0.21 -0.46 16 19 F -0.19 -0.33 17.18 44.97 0.77 0.44 16 20 F -0.19 -0.08 16.65 44.97 0.75 0.67 16 21 F -0.18 0.14 15.76 44.97 0.71 0.85 16 22 C -0.16 1.26 6.91 31.12 0.22 1.48 16 23 C -0.05 -0.11 6.50 24.59 0.16 0.05 16 24 C -0.12 0.14 8.87 71.23 0.63 0.77 16 25 S 0.17 0.18 23.31 -56.49 -1.32 -1.14 16 26 H 0.10 -0.25 8.14 -2.38 -0.02 -0.27 16 27 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.08 0.24 4.71 -2.39 -0.01 0.23 16 29 H 0.10 0.12 2.77 -2.39 -0.01 0.11 16 30 H 0.38 -3.00 9.12 -74.06 -0.68 -3.68 16 31 H -0.27 -2.35 6.23 99.48 0.62 -1.73 16 32 H -0.29 -3.83 7.11 99.48 0.71 -3.12 16 33 H 0.43 -4.21 8.64 -96.75 -0.84 -5.05 16 34 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 35 H 0.10 -0.47 4.33 -2.38 -0.01 -0.48 16 36 H 0.12 -1.30 7.88 -2.39 -0.02 -1.32 16 37 H 0.11 -1.08 8.10 -2.38 -0.02 -1.10 16 38 H 0.40 -3.83 8.42 -74.05 -0.62 -4.46 16 39 H 0.09 -0.67 8.10 -2.39 -0.02 -0.69 16 40 H 0.11 -1.04 7.14 -2.39 -0.02 -1.06 16 41 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.10 -0.57 8.14 -2.38 -0.02 -0.59 16 43 H 0.10 -0.22 6.47 -2.39 -0.02 -0.24 16 Total: 0.00 -19.16 373.09 -3.65 -22.81 By element: Atomic # 1 Polarization: -24.97 SS G_CDS: -1.04 Total: -26.01 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 2.77 Total: 0.55 kcal Atomic # 7 Polarization: 5.90 SS G_CDS: -1.12 Total: 4.77 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -6.97 Total: -18.27 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 2.23 Total: 1.96 kcal Atomic # 14 Polarization: 4.71 SS G_CDS: 2.10 Total: 6.81 kcal Atomic # 16 Polarization: 9.00 SS G_CDS: -1.62 Total: 7.38 kcal Total: -19.16 -3.65 -22.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.947 kcal (2) G-P(sol) polarization free energy of solvation -19.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds