Wall clock time and date at job start Mon Mar 8 2021 12:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47015 * 2 1 4 4 C 1.50705 * 109.47355 * 240.00288 * 2 1 3 5 5 C 1.38208 * 119.99556 * 284.34029 * 4 2 1 6 6 S 1.76204 * 120.00215 * 0.02562 * 5 4 2 7 7 O 1.42104 * 106.40044 * 311.11655 * 6 5 4 8 8 O 1.42100 * 106.40211 * 178.19504 * 6 5 4 9 9 N 1.65593 * 107.21826 * 64.65794 * 6 5 4 10 10 C 1.46499 * 120.00530 * 64.54388 * 9 6 5 11 11 C 1.52995 * 109.47815 * 163.94644 * 10 9 6 12 12 H 1.09000 * 112.90460 * 316.25285 * 11 10 9 13 13 C 1.53950 * 113.53871 * 87.50071 * 11 10 9 14 14 C 1.53786 * 87.01991 * 89.19360 * 13 11 10 15 15 O 1.42900 * 113.61297 * 270.77708 * 14 13 11 16 16 C 1.52993 * 113.61466 * 139.94906 * 14 13 11 17 17 F 1.39905 * 109.47184 * 200.86441 * 16 14 13 18 18 F 1.39897 * 109.47667 * 320.86407 * 16 14 13 19 19 F 1.39907 * 109.47023 * 80.86987 * 16 14 13 20 20 C 1.53774 * 113.61792 * 185.00347 * 11 10 9 21 21 C 1.38260 * 119.99795 * 180.27583 * 5 4 2 22 22 C 1.38211 * 119.99722 * 359.46897 * 21 5 4 23 23 C 1.38252 * 119.99982 * 0.53294 * 22 21 5 24 24 C 1.38214 * 120.00326 * 359.74066 * 23 22 21 25 25 H 0.96705 * 113.99631 * 60.00017 * 1 2 3 26 26 H 1.09000 * 109.47011 * 119.99735 * 2 1 3 27 27 H 1.48504 * 110.00097 * 59.99782 * 3 2 1 28 28 H 1.48501 * 110.00216 * 181.31900 * 3 2 1 29 29 H 0.97002 * 120.00089 * 244.54692 * 9 6 5 30 30 H 1.09000 * 109.46554 * 43.94386 * 10 9 6 31 31 H 1.09005 * 109.47109 * 283.95049 * 10 9 6 32 32 H 1.09000 * 113.66810 * 334.66888 * 13 11 10 33 33 H 1.09000 * 113.61709 * 203.70945 * 13 11 10 34 34 H 0.96705 * 113.99604 * 279.12743 * 15 14 13 35 35 H 1.09005 * 113.61506 * 156.33506 * 20 11 10 36 36 H 1.09000 * 113.61881 * 25.42901 * 20 11 10 37 37 H 1.07997 * 120.00051 * 179.72611 * 21 5 4 38 38 H 1.08007 * 119.99677 * 180.29405 * 22 21 5 39 39 H 1.08005 * 120.00039 * 179.76799 * 23 22 21 40 40 H 1.07997 * 120.00281 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.8823 -2.0898 -1.3005 6 16 1.2316 -3.0178 0.0487 7 8 1.8670 -2.5230 1.2195 8 8 1.2787 -4.3828 -0.3435 9 7 -0.3714 -2.6258 0.1854 10 6 -1.3030 -2.9640 -0.8935 11 6 -2.7394 -2.8706 -0.3753 12 1 -2.8649 -3.3192 0.6101 13 6 -3.3453 -1.4603 -0.4938 14 6 -3.8231 -1.8707 -1.8968 15 8 -2.8710 -1.6002 -2.9275 16 6 -5.2271 -1.3676 -2.2377 17 9 -5.7628 -2.1442 -3.2707 18 9 -6.0454 -1.4669 -1.1073 19 9 -5.1571 -0.0315 -2.6469 20 6 -3.7941 -3.3251 -1.3979 21 6 2.3484 -2.7418 -2.4270 22 6 2.8534 -2.0136 -3.4876 23 6 2.9026 -0.6337 -3.4176 24 6 2.4418 0.0178 -2.2891 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5614 2.4679 1.2085 28 1 3.5346 1.7704 -0.0321 29 1 -0.6937 -2.1721 0.9799 30 1 -1.1064 -3.9791 -1.2383 31 1 -1.1692 -2.2670 -1.7209 32 1 -2.6014 -0.6637 -0.5016 33 1 -4.1589 -1.2742 0.2073 34 1 -2.8684 -0.6814 -3.2292 35 1 -4.7306 -3.6499 -0.9443 36 1 -3.4120 -4.0319 -2.1345 37 1 2.3141 -3.8200 -2.4799 38 1 3.2132 -2.5228 -4.3696 39 1 3.3007 -0.0649 -4.2448 40 1 2.4799 1.0958 -2.2345 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664670_2726874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:17 Heat of formation + Delta-G solvation = -241.255453 kcal Electronic energy + Delta-G solvation = -33686.602556 eV Core-core repulsion = 28567.374439 eV Total energy + Delta-G solvation = -5119.228117 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.078 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -51.15127 -48.69414 -48.64239 -41.03267 -40.63748 -38.58186 -37.52540 -37.07381 -36.64954 -34.99372 -32.76688 -32.35050 -29.55483 -27.00929 -26.91763 -26.47534 -24.38237 -23.33752 -22.74990 -20.80948 -20.41215 -19.92613 -19.45864 -19.30134 -19.18197 -18.33273 -17.99764 -17.49597 -17.00869 -16.85002 -16.41776 -16.12094 -15.91130 -15.81683 -15.58908 -15.50928 -15.45203 -15.08846 -14.98236 -14.96706 -14.82324 -14.75147 -14.46620 -14.33754 -14.19131 -13.84084 -13.69922 -13.54243 -13.32528 -13.28373 -13.01372 -12.92443 -12.78972 -12.30935 -12.27894 -12.19199 -11.91372 -11.59673 -11.42079 -11.02051 -10.52343 -10.42018 -10.28359 -10.01584 -5.04883 -0.67230 -0.26216 0.17661 1.22366 1.63770 1.64445 1.94020 1.99216 2.39882 2.57144 2.66812 2.69680 2.80143 3.03887 3.28495 3.39215 3.50208 3.53615 3.58946 3.64677 3.84302 3.89660 4.03544 4.26109 4.29746 4.43390 4.49366 4.58755 4.62812 4.63684 4.69547 4.84391 4.85871 4.92624 5.02877 5.03762 5.13518 5.20807 5.30846 5.33793 5.79580 6.19127 6.45458 6.76941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.129 4.129 3 Si 0.796 3.204 4 C -0.022 4.022 5 C -0.667 4.667 6 S 2.703 3.297 7 O -0.996 6.996 8 O -0.996 6.996 9 N -1.085 6.085 10 C 0.133 3.867 11 C -0.100 4.100 12 H 0.105 0.895 13 C -0.143 4.143 14 C 0.069 3.931 15 O -0.514 6.514 16 C 0.428 3.572 17 F -0.190 7.190 18 F -0.181 7.181 19 F -0.186 7.186 20 C -0.119 4.119 21 C -0.039 4.039 22 C -0.138 4.138 23 C -0.053 4.053 24 C -0.136 4.136 25 H 0.397 0.603 26 H 0.122 0.878 27 H -0.293 1.293 28 H -0.296 1.296 29 H 0.429 0.571 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.403 0.597 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 5.386 -5.502 7.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.239 4.239 3 Si 0.701 3.299 4 C -0.024 4.024 5 C -0.756 4.756 6 S 2.796 3.204 7 O -0.986 6.986 8 O -0.985 6.985 9 N -0.849 5.849 10 C 0.007 3.993 11 C -0.120 4.120 12 H 0.123 0.877 13 C -0.181 4.181 14 C 0.025 3.975 15 O -0.323 6.323 16 C 0.373 3.627 17 F -0.172 7.172 18 F -0.162 7.162 19 F -0.167 7.167 20 C -0.157 4.157 21 C -0.059 4.059 22 C -0.157 4.157 23 C -0.071 4.071 24 C -0.154 4.154 25 H 0.248 0.752 26 H 0.139 0.861 27 H -0.221 1.221 28 H -0.224 1.224 29 H 0.267 0.733 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.256 0.744 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.252 4.360 -4.112 5.998 hybrid contribution -0.405 0.429 -0.103 0.599 sum -0.657 4.789 -4.215 6.414 Atomic orbital electron populations 1.86520 1.14533 1.81946 1.50491 1.25844 0.87431 1.13030 0.97568 0.94149 0.77469 0.73344 0.84888 1.20072 0.94543 0.91668 0.96092 1.30467 1.19585 1.06875 1.18656 1.01141 0.73121 0.72973 0.73182 1.93509 1.75406 1.81476 1.48228 1.93537 1.86874 1.33848 1.84289 1.54893 1.23656 1.76588 1.29751 1.21285 0.87477 1.01535 0.88987 1.22282 0.92395 0.96986 1.00344 0.87663 1.23835 1.02539 0.99034 0.92657 1.23672 0.82119 1.00791 0.90903 1.86609 1.55385 1.36046 1.54247 1.21738 0.91229 0.75429 0.74274 1.93197 1.88493 1.75081 1.60408 1.93174 1.75613 1.95841 1.51615 1.93176 1.96634 1.36186 1.90725 1.23252 1.01353 0.92504 0.98548 1.21200 0.92343 1.00910 0.91421 1.21692 0.99706 0.95077 0.99181 1.21909 0.92803 0.94575 0.97803 1.21468 0.99729 1.00909 0.93307 0.75242 0.86071 1.22109 1.22389 0.73304 0.91239 0.88575 0.86623 0.87361 0.74437 0.86541 0.88754 0.84302 0.82754 0.81548 0.81808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 4.06 10.61 -148.98 -1.58 2.48 16 2 C -0.13 0.27 2.03 71.24 0.14 0.42 16 3 Si 0.80 -3.35 29.93 68.60 2.05 -1.29 16 4 C -0.02 0.04 5.25 -19.87 -0.10 -0.07 16 5 C -0.67 -1.34 5.87 22.27 0.13 -1.21 16 6 S 2.70 15.43 5.07 -56.49 -0.29 15.15 16 7 O -1.00 -11.84 15.50 -128.00 -1.98 -13.83 16 8 O -1.00 -11.62 16.44 -128.00 -2.10 -13.73 16 9 N -1.09 2.11 4.27 -187.49 -0.80 1.31 16 10 C 0.13 -0.59 5.81 86.38 0.50 -0.09 16 11 C -0.10 0.72 3.98 -10.21 -0.04 0.68 16 12 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 13 C -0.14 1.33 6.92 31.18 0.22 1.54 16 14 C 0.07 -0.46 1.33 -10.27 -0.01 -0.47 16 15 O -0.51 4.13 11.44 -148.98 -1.70 2.43 16 16 C 0.43 -0.93 2.83 71.98 0.20 -0.73 16 17 F -0.19 -0.41 17.20 44.97 0.77 0.36 16 18 F -0.18 0.10 15.74 44.97 0.71 0.81 16 19 F -0.19 0.36 16.72 44.97 0.75 1.11 16 20 C -0.12 0.72 6.88 31.12 0.21 0.94 16 21 C -0.04 -0.03 9.55 22.27 0.21 0.18 16 22 C -0.14 0.55 10.05 22.27 0.22 0.78 16 23 C -0.05 0.38 10.05 22.27 0.22 0.60 16 24 C -0.14 0.86 8.66 22.27 0.19 1.05 16 25 H 0.40 -6.61 8.70 -74.05 -0.64 -7.26 16 26 H 0.12 0.49 5.36 -2.39 -0.01 0.48 16 27 H -0.29 -0.92 7.11 99.48 0.71 -0.21 16 28 H -0.30 -0.76 7.11 99.48 0.71 -0.06 16 29 H 0.43 -1.79 8.18 -96.75 -0.79 -2.59 16 30 H 0.07 -0.13 7.74 -2.39 -0.02 -0.14 16 31 H 0.10 -0.65 6.12 -2.38 -0.01 -0.66 16 32 H 0.12 -1.42 8.10 -2.39 -0.02 -1.44 16 33 H 0.11 -0.99 7.18 -2.39 -0.02 -1.00 16 34 H 0.40 -5.79 8.50 -74.05 -0.63 -6.42 16 35 H 0.12 -0.83 7.83 -2.38 -0.02 -0.85 16 36 H 0.09 -0.48 8.10 -2.39 -0.02 -0.50 16 37 H 0.14 0.15 7.34 -2.91 -0.02 0.13 16 38 H 0.15 -1.29 8.06 -2.91 -0.02 -1.31 16 39 H 0.17 -2.21 8.06 -2.91 -0.02 -2.23 16 40 H 0.16 -2.05 5.15 -2.91 -0.02 -2.06 16 Total: 0.00 -25.60 348.91 -2.94 -28.55 By element: Atomic # 1 Polarization: -26.09 SS G_CDS: -0.87 Total: -26.96 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 2.11 Total: 3.62 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -0.80 Total: 1.31 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -7.37 Total: -22.66 kcal Atomic # 9 Polarization: 0.05 SS G_CDS: 2.23 Total: 2.29 kcal Atomic # 14 Polarization: -3.35 SS G_CDS: 2.05 Total: -1.29 kcal Atomic # 16 Polarization: 15.43 SS G_CDS: -0.29 Total: 15.15 kcal Total: -25.60 -2.94 -28.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664670_2726874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.710 kcal (2) G-P(sol) polarization free energy of solvation -25.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds