Wall clock time and date at job start Mon Mar 8 2021 12:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47573 * 2 1 4 4 C 1.50701 * 109.47083 * 239.99655 * 2 1 3 5 5 C 1.38235 * 119.99808 * 300.00395 * 4 2 1 6 6 C 1.38243 * 119.99602 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00069 * 0.09581 * 6 5 4 8 8 S 1.76204 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.42101 * 106.40290 * 23.46704 * 8 7 6 10 10 O 1.42098 * 106.40224 * 156.39178 * 8 7 6 11 11 N 1.65602 * 107.21527 * 269.93204 * 8 7 6 12 12 C 1.46499 * 120.00395 * 65.00209 * 11 8 7 13 13 C 1.52998 * 109.47462 * 165.00032 * 12 11 8 14 14 F 1.39905 * 109.46609 * 304.99585 * 13 12 11 15 15 C 1.53002 * 109.47098 * 64.99697 * 13 12 11 16 16 C 1.52997 * 109.46640 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47043 * 299.99421 * 16 15 13 18 18 H 1.08997 * 109.47904 * 300.00546 * 17 16 15 19 19 C 1.53005 * 109.47147 * 180.02562 * 17 16 15 20 20 O 1.42901 * 109.46859 * 65.00392 * 19 17 16 21 21 C 1.53002 * 109.46930 * 60.00757 * 17 16 15 22 22 C 1.52994 * 109.47237 * 185.00165 * 13 12 11 23 23 C 1.38234 * 119.99866 * 359.86117 * 7 6 5 24 24 C 1.38230 * 119.99865 * 119.98141 * 4 2 1 25 25 H 0.96699 * 113.99492 * 59.99576 * 1 2 3 26 26 H 1.09002 * 109.46585 * 119.99848 * 2 1 3 27 27 H 1.48494 * 109.99863 * 59.99470 * 3 2 1 28 28 H 1.48497 * 110.00166 * 181.31815 * 3 2 1 29 29 H 1.08000 * 120.00616 * 359.70324 * 5 4 2 30 30 H 1.08001 * 119.99556 * 179.97438 * 6 5 4 31 31 H 0.96998 * 119.99867 * 244.99970 * 11 8 7 32 32 H 1.09004 * 109.46841 * 284.99704 * 12 11 8 33 33 H 1.09005 * 109.46895 * 44.99659 * 12 11 8 34 34 H 1.09002 * 109.46650 * 300.00116 * 15 13 12 35 35 H 1.08995 * 109.46744 * 60.00274 * 15 13 12 36 36 H 1.08999 * 109.46683 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.47784 * 59.99890 * 16 15 13 38 38 H 1.08995 * 109.47010 * 185.00240 * 19 17 16 39 39 H 1.08998 * 109.47090 * 305.00490 * 19 17 16 40 40 H 0.96700 * 113.99769 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47391 * 179.97438 * 21 17 16 42 42 H 1.08999 * 109.47122 * 60.00006 * 21 17 16 43 43 H 1.09001 * 109.46912 * 299.99363 * 22 13 12 44 44 H 1.09001 * 109.47644 * 59.99287 * 22 13 12 45 45 H 1.08000 * 119.99729 * 180.02562 * 23 7 6 46 46 H 1.08001 * 120.00371 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5973 -2.0339 -1.4491 6 6 2.0577 -2.6855 -2.5781 7 6 2.8537 -2.0142 -3.4873 8 16 3.4410 -2.8449 -4.9259 9 8 2.5411 -3.9183 -5.1650 10 8 3.7195 -1.8355 -5.8865 11 7 4.8959 -3.5327 -4.5351 12 6 4.9562 -4.5995 -3.5328 13 6 6.3091 -5.3082 -3.6230 14 9 6.5125 -5.7599 -4.9314 15 6 7.4231 -4.3311 -3.2418 16 6 8.7760 -5.0397 -3.3326 17 6 8.7928 -6.2317 -2.3735 18 1 8.6345 -5.8801 -1.3540 19 6 10.1460 -6.9400 -2.4638 20 8 11.1741 -6.0643 -1.9966 21 6 7.6788 -7.2087 -2.7548 22 6 6.3255 -6.4999 -2.6638 23 6 3.1869 -0.6905 -3.2689 24 6 2.7257 -0.0386 -2.1405 25 1 -0.3932 0.4418 -0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5616 2.4678 1.2084 28 1 3.5347 1.7702 -0.0321 29 1 0.9803 -2.5602 -0.7358 30 1 1.7970 -3.7196 -2.7487 31 1 5.7081 -3.2292 -4.9698 32 1 4.8364 -4.1704 -2.5380 33 1 4.1569 -5.3172 -3.7177 34 1 7.4113 -3.4821 -3.9253 35 1 7.2645 -3.9792 -2.2224 36 1 9.5696 -4.3438 -3.0605 37 1 8.9344 -5.3914 -4.3521 38 1 10.1272 -7.8393 -1.8483 39 1 10.3447 -7.2131 -3.5002 40 1 12.0611 -6.4483 -2.0258 41 1 7.6910 -8.0582 -2.0718 42 1 7.8372 -7.5604 -3.7742 43 1 6.1670 -6.1480 -1.6444 44 1 5.5318 -7.1960 -2.9353 45 1 3.8085 -0.1659 -3.9795 46 1 2.9868 0.9953 -1.9697 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17664726_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:22 Heat of formation + Delta-G solvation = -184.959441 kcal Electronic energy + Delta-G solvation = -31075.576539 eV Core-core repulsion = 26586.622313 eV Total energy + Delta-G solvation = -4488.954225 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -48.76457 -40.79538 -39.77042 -38.30591 -37.82973 -37.63202 -36.88368 -36.21535 -33.11667 -32.41310 -32.30149 -32.06460 -28.08312 -27.33291 -24.97379 -24.18426 -24.05885 -23.08416 -21.96308 -20.89289 -20.62898 -19.36088 -18.73098 -18.36768 -18.31618 -17.57420 -17.35492 -17.06250 -16.56414 -16.47812 -16.22083 -16.00468 -15.85365 -15.74060 -15.60981 -15.20619 -14.97457 -14.89771 -14.48939 -14.40659 -14.27206 -14.08213 -13.86011 -13.83486 -13.43322 -13.23495 -13.13542 -13.11388 -13.05738 -12.77940 -12.73062 -12.48354 -12.26167 -12.12886 -12.01276 -11.87988 -11.67383 -11.32418 -11.21847 -10.93827 -10.77475 -10.75896 -10.41814 -10.25376 -5.18721 -0.77609 -0.43434 0.08297 1.08551 1.46696 1.79599 1.82683 2.25385 2.68666 3.00867 3.10654 3.21133 3.22833 3.28284 3.36714 3.41671 3.47870 3.65050 3.69611 3.80254 3.85994 4.01424 4.04767 4.13089 4.15856 4.22452 4.23463 4.25227 4.28291 4.41691 4.43994 4.48077 4.49407 4.57786 4.70617 4.71989 4.80385 4.81864 4.84924 4.87239 4.88556 4.98952 5.10503 5.13294 5.23278 5.34600 5.58469 5.73905 6.35618 6.60894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.077 4.077 3 Si 0.691 3.309 4 C -0.063 4.063 5 C -0.114 4.114 6 C -0.020 4.020 7 C -0.675 4.675 8 S 2.697 3.303 9 O -0.950 6.950 10 O -0.951 6.951 11 N -1.113 6.113 12 C 0.095 3.905 13 C 0.119 3.881 14 F -0.197 7.197 15 C -0.141 4.141 16 C -0.113 4.113 17 C -0.089 4.089 18 H 0.079 0.921 19 C 0.079 3.921 20 O -0.574 6.574 21 C -0.115 4.115 22 C -0.138 4.138 23 C -0.011 4.011 24 C -0.139 4.139 25 H 0.382 0.618 26 H 0.120 0.880 27 H -0.251 1.251 28 H -0.255 1.255 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.422 0.578 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.381 0.619 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.146 0.854 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -0.262 3.294 4.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.188 4.188 3 Si 0.592 3.408 4 C -0.063 4.063 5 C -0.132 4.132 6 C -0.040 4.040 7 C -0.762 4.762 8 S 2.786 3.214 9 O -0.940 6.940 10 O -0.941 6.941 11 N -0.874 5.874 12 C -0.032 4.032 13 C 0.099 3.901 14 F -0.177 7.177 15 C -0.178 4.178 16 C -0.150 4.150 17 C -0.108 4.108 18 H 0.098 0.902 19 C 0.001 3.999 20 O -0.380 6.380 21 C -0.153 4.153 22 C -0.176 4.176 23 C -0.031 4.031 24 C -0.157 4.157 25 H 0.229 0.771 26 H 0.137 0.863 27 H -0.175 1.175 28 H -0.180 1.180 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.258 0.742 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.228 0.772 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.164 0.836 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.770 0.307 3.614 4.036 hybrid contribution 0.902 -0.685 0.581 1.272 sum 2.672 -0.378 4.195 4.988 Atomic orbital electron populations 1.86532 1.16506 1.81691 1.49368 1.25219 0.85726 1.10577 0.97282 0.94572 0.81085 0.77579 0.87580 1.20763 0.94839 0.94964 0.95778 1.21186 1.00017 0.94111 0.97932 1.21030 0.91529 0.99919 0.91489 1.31007 1.14932 1.07184 1.23088 1.01901 0.72619 0.73515 0.73393 1.93614 1.62855 1.54112 1.83401 1.93624 1.84196 1.59145 1.57184 1.55451 1.26993 1.49737 1.55257 1.21962 0.98859 0.90008 0.92347 1.21069 0.94632 0.94873 0.79477 1.92882 1.96043 1.90484 1.38319 1.22163 0.94440 0.97939 1.03304 1.21515 0.96377 0.97192 0.99927 1.21189 0.93000 0.95898 1.00690 0.90232 1.22209 0.87740 0.91982 0.97952 1.86458 1.19011 1.44156 1.88335 1.21498 0.92894 0.97890 1.02982 1.22089 0.99184 0.96554 0.99775 1.20906 0.94534 0.91960 0.95666 1.21178 0.99533 1.00103 0.94914 0.77068 0.86280 1.17543 1.17999 0.84445 0.83876 0.74214 0.89776 0.88693 0.90491 0.89731 0.90411 0.91275 0.93540 0.93482 0.77180 0.90819 0.90794 0.89557 0.89822 0.83642 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.49 12.77 -35.23 -0.45 0.04 16 2 C -0.08 0.12 2.82 36.01 0.10 0.22 16 3 Si 0.69 -1.48 29.79 -169.99 -5.06 -6.54 16 4 C -0.06 0.07 5.39 -104.63 -0.56 -0.50 16 5 C -0.11 0.09 9.61 -39.58 -0.38 -0.29 16 6 C -0.02 0.01 9.52 -39.58 -0.38 -0.37 16 7 C -0.68 0.07 5.95 -39.58 -0.24 -0.17 16 8 S 2.70 2.85 5.74 -107.50 -0.62 2.24 16 9 O -0.95 -3.76 16.75 -57.17 -0.96 -4.72 16 10 O -0.95 -3.63 17.28 -57.17 -0.99 -4.62 16 11 N -1.11 1.41 5.72 -10.61 -0.06 1.35 16 12 C 0.10 -0.21 5.39 -4.04 -0.02 -0.24 16 13 C 0.12 -0.20 0.87 -90.62 -0.08 -0.28 16 14 F -0.20 -0.23 15.60 2.25 0.04 -0.19 16 15 C -0.14 0.29 4.87 -26.73 -0.13 0.16 16 16 C -0.11 0.10 4.98 -26.73 -0.13 -0.03 16 17 C -0.09 0.12 2.43 -90.62 -0.22 -0.10 16 18 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 19 C 0.08 -0.10 6.43 37.16 0.24 0.14 16 20 O -0.57 0.02 13.19 -35.23 -0.46 -0.44 16 21 C -0.12 0.24 5.08 -26.71 -0.14 0.11 16 22 C -0.14 0.37 5.00 -26.71 -0.13 0.24 16 23 C -0.01 0.01 9.52 -39.58 -0.38 -0.37 16 24 C -0.14 0.19 8.67 -39.59 -0.34 -0.15 16 25 H 0.38 -1.74 8.70 45.56 0.40 -1.35 16 26 H 0.12 -0.18 7.96 -51.93 -0.41 -0.59 16 27 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 28 H -0.26 0.02 7.11 56.52 0.40 0.42 16 29 H 0.14 -0.23 8.06 -52.49 -0.42 -0.65 16 30 H 0.14 -0.26 7.62 -52.49 -0.40 -0.66 16 31 H 0.42 -0.93 7.40 -34.47 -0.26 -1.19 16 32 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 33 H 0.09 -0.21 7.75 -51.93 -0.40 -0.61 16 34 H 0.08 -0.19 6.90 -51.93 -0.36 -0.55 16 35 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 36 H 0.08 0.01 7.82 -51.93 -0.41 -0.40 16 37 H 0.07 0.00 7.80 -51.93 -0.41 -0.41 16 38 H 0.05 -0.09 8.14 -51.93 -0.42 -0.52 16 39 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 40 H 0.38 -1.50 9.12 45.56 0.42 -1.08 16 41 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 42 H 0.07 -0.09 7.80 -51.93 -0.41 -0.49 16 43 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 44 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 45 H 0.15 -0.29 7.62 -52.49 -0.40 -0.69 16 46 H 0.14 -0.46 4.88 -52.49 -0.26 -0.71 16 LS Contribution 382.15 15.07 5.76 5.76 Total: 0.00 -11.19 382.15 -11.49 -22.68 By element: Atomic # 1 Polarization: -8.03 SS G_CDS: -5.89 Total: -13.92 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.79 Total: -1.62 kcal Atomic # 7 Polarization: 1.41 SS G_CDS: -0.06 Total: 1.35 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -2.86 Total: -9.75 kcal Atomic # 9 Polarization: -0.23 SS G_CDS: 0.04 Total: -0.19 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: -5.06 Total: -6.54 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -0.62 Total: 2.24 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -11.19 -11.49 -22.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.279 kcal (2) G-P(sol) polarization free energy of solvation -11.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds