Wall clock time and date at job start Mon Mar 8 2021 12:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47573 * 2 1 4 4 C 1.50701 * 109.47083 * 239.99655 * 2 1 3 5 5 C 1.38235 * 119.99808 * 300.00395 * 4 2 1 6 6 C 1.38243 * 119.99602 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00069 * 0.09581 * 6 5 4 8 8 S 1.76204 * 119.99929 * 179.97438 * 7 6 5 9 9 O 1.42101 * 106.40290 * 23.46704 * 8 7 6 10 10 O 1.42098 * 106.40224 * 156.39178 * 8 7 6 11 11 N 1.65602 * 107.21527 * 269.93204 * 8 7 6 12 12 C 1.46499 * 120.00395 * 65.00209 * 11 8 7 13 13 C 1.52998 * 109.47462 * 165.00032 * 12 11 8 14 14 F 1.39905 * 109.46609 * 304.99585 * 13 12 11 15 15 C 1.53002 * 109.47098 * 64.99697 * 13 12 11 16 16 C 1.52997 * 109.46640 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47043 * 299.99421 * 16 15 13 18 18 H 1.08997 * 109.47904 * 300.00546 * 17 16 15 19 19 C 1.53005 * 109.47147 * 180.02562 * 17 16 15 20 20 O 1.42901 * 109.46859 * 65.00392 * 19 17 16 21 21 C 1.53002 * 109.46930 * 60.00757 * 17 16 15 22 22 C 1.52994 * 109.47237 * 185.00165 * 13 12 11 23 23 C 1.38234 * 119.99866 * 359.86117 * 7 6 5 24 24 C 1.38230 * 119.99865 * 119.98141 * 4 2 1 25 25 H 0.96699 * 113.99492 * 59.99576 * 1 2 3 26 26 H 1.09002 * 109.46585 * 119.99848 * 2 1 3 27 27 H 1.48494 * 109.99863 * 59.99470 * 3 2 1 28 28 H 1.48497 * 110.00166 * 181.31815 * 3 2 1 29 29 H 1.08000 * 120.00616 * 359.70324 * 5 4 2 30 30 H 1.08001 * 119.99556 * 179.97438 * 6 5 4 31 31 H 0.96998 * 119.99867 * 244.99970 * 11 8 7 32 32 H 1.09004 * 109.46841 * 284.99704 * 12 11 8 33 33 H 1.09005 * 109.46895 * 44.99659 * 12 11 8 34 34 H 1.09002 * 109.46650 * 300.00116 * 15 13 12 35 35 H 1.08995 * 109.46744 * 60.00274 * 15 13 12 36 36 H 1.08999 * 109.46683 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.47784 * 59.99890 * 16 15 13 38 38 H 1.08995 * 109.47010 * 185.00240 * 19 17 16 39 39 H 1.08998 * 109.47090 * 305.00490 * 19 17 16 40 40 H 0.96700 * 113.99769 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47391 * 179.97438 * 21 17 16 42 42 H 1.08999 * 109.47122 * 60.00006 * 21 17 16 43 43 H 1.09001 * 109.46912 * 299.99363 * 22 13 12 44 44 H 1.09001 * 109.47644 * 59.99287 * 22 13 12 45 45 H 1.08000 * 119.99729 * 180.02562 * 23 7 6 46 46 H 1.08001 * 120.00371 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5973 -2.0339 -1.4491 6 6 2.0577 -2.6855 -2.5781 7 6 2.8537 -2.0142 -3.4873 8 16 3.4410 -2.8449 -4.9259 9 8 2.5411 -3.9183 -5.1650 10 8 3.7195 -1.8355 -5.8865 11 7 4.8959 -3.5327 -4.5351 12 6 4.9562 -4.5995 -3.5328 13 6 6.3091 -5.3082 -3.6230 14 9 6.5125 -5.7599 -4.9314 15 6 7.4231 -4.3311 -3.2418 16 6 8.7760 -5.0397 -3.3326 17 6 8.7928 -6.2317 -2.3735 18 1 8.6345 -5.8801 -1.3540 19 6 10.1460 -6.9400 -2.4638 20 8 11.1741 -6.0643 -1.9966 21 6 7.6788 -7.2087 -2.7548 22 6 6.3255 -6.4999 -2.6638 23 6 3.1869 -0.6905 -3.2689 24 6 2.7257 -0.0386 -2.1405 25 1 -0.3932 0.4418 -0.7650 26 1 1.7923 -0.5138 0.8900 27 1 1.5616 2.4678 1.2084 28 1 3.5347 1.7702 -0.0321 29 1 0.9803 -2.5602 -0.7358 30 1 1.7970 -3.7196 -2.7487 31 1 5.7081 -3.2292 -4.9698 32 1 4.8364 -4.1704 -2.5380 33 1 4.1569 -5.3172 -3.7177 34 1 7.4113 -3.4821 -3.9253 35 1 7.2645 -3.9792 -2.2224 36 1 9.5696 -4.3438 -3.0605 37 1 8.9344 -5.3914 -4.3521 38 1 10.1272 -7.8393 -1.8483 39 1 10.3447 -7.2131 -3.5002 40 1 12.0611 -6.4483 -2.0258 41 1 7.6910 -8.0582 -2.0718 42 1 7.8372 -7.5604 -3.7742 43 1 6.1670 -6.1480 -1.6444 44 1 5.5318 -7.1960 -2.9353 45 1 3.8085 -0.1659 -3.9795 46 1 2.9868 0.9953 -1.9697 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664726_13421422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:21 Heat of formation + Delta-G solvation = -190.106604 kcal Electronic energy + Delta-G solvation = -31075.799736 eV Core-core repulsion = 26586.622313 eV Total energy + Delta-G solvation = -4489.177423 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.73211 -40.69331 -39.64128 -38.47877 -37.71594 -37.53931 -37.07288 -36.12060 -33.03029 -32.29481 -32.19641 -31.90731 -27.95508 -27.23920 -24.84866 -24.07771 -23.89955 -23.00228 -21.83124 -20.80233 -20.59756 -19.31455 -18.74538 -18.29750 -18.23433 -17.55792 -17.25264 -16.97783 -16.48136 -16.37808 -16.15143 -15.88143 -15.76687 -15.67845 -15.55532 -15.10203 -14.86576 -14.79083 -14.44281 -14.26967 -14.18723 -14.00705 -13.79951 -13.76090 -13.43388 -13.34355 -13.26832 -13.12707 -12.97578 -12.66698 -12.64060 -12.44956 -12.11801 -12.01766 -11.99767 -11.82235 -11.55938 -11.18943 -11.09157 -10.82980 -10.66862 -10.63788 -10.32054 -10.15505 -5.03240 -0.80318 -0.39843 0.18480 1.23029 1.58243 1.83649 1.92515 2.32081 2.65939 3.11543 3.22119 3.32804 3.39648 3.44150 3.50553 3.58123 3.64388 3.77083 3.82745 3.93156 4.02086 4.18515 4.20512 4.28106 4.31191 4.35285 4.37427 4.42092 4.45685 4.57865 4.59093 4.60338 4.63240 4.73382 4.83996 4.85847 4.94391 4.95946 4.97334 5.02855 5.03919 5.13160 5.24378 5.26038 5.33542 5.46814 5.69097 5.86614 6.67103 6.85908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.079 4.079 3 Si 0.769 3.231 4 C -0.063 4.063 5 C -0.119 4.119 6 C -0.026 4.026 7 C -0.676 4.676 8 S 2.712 3.288 9 O -0.984 6.984 10 O -0.984 6.984 11 N -1.108 6.108 12 C 0.089 3.911 13 C 0.116 3.884 14 F -0.216 7.216 15 C -0.140 4.140 16 C -0.111 4.111 17 C -0.088 4.088 18 H 0.079 0.921 19 C 0.076 3.924 20 O -0.594 6.594 21 C -0.113 4.113 22 C -0.138 4.138 23 C -0.020 4.020 24 C -0.141 4.141 25 H 0.397 0.603 26 H 0.119 0.881 27 H -0.299 1.299 28 H -0.279 1.279 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.426 0.574 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.395 0.605 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.156 0.844 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 -0.125 4.327 4.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.189 4.189 3 Si 0.675 3.325 4 C -0.064 4.064 5 C -0.138 4.138 6 C -0.045 4.045 7 C -0.765 4.765 8 S 2.804 3.196 9 O -0.973 6.973 10 O -0.974 6.974 11 N -0.870 5.870 12 C -0.038 4.038 13 C 0.096 3.904 14 F -0.197 7.197 15 C -0.177 4.177 16 C -0.148 4.148 17 C -0.107 4.107 18 H 0.098 0.902 19 C -0.002 4.002 20 O -0.402 6.402 21 C -0.150 4.150 22 C -0.176 4.176 23 C -0.039 4.039 24 C -0.159 4.159 25 H 0.247 0.753 26 H 0.136 0.864 27 H -0.227 1.227 28 H -0.205 1.205 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.263 0.737 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.245 0.755 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.105 0.895 45 H 0.174 0.826 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.556 0.415 4.597 4.871 hybrid contribution 0.998 -0.713 0.335 1.272 sum 2.554 -0.298 4.932 5.562 Atomic orbital electron populations 1.86499 1.16744 1.82112 1.50574 1.25297 0.85637 1.10914 0.97087 0.93642 0.78288 0.75313 0.85270 1.20858 0.94674 0.94961 0.95869 1.21331 1.00109 0.94372 0.97989 1.21188 0.91401 1.00494 0.91455 1.30739 1.15700 1.07489 1.22526 1.01088 0.72468 0.72670 0.73352 1.93567 1.64177 1.55277 1.84322 1.93573 1.84727 1.60031 1.59067 1.55223 1.26280 1.49882 1.55664 1.22177 0.98453 0.89822 0.93313 1.21260 0.94970 0.95460 0.78720 1.92845 1.96184 1.90765 1.39908 1.22180 0.93512 0.97772 1.04279 1.21459 0.96807 0.97320 0.99243 1.21191 0.93257 0.95827 1.00394 0.90215 1.22285 0.87665 0.92193 0.98060 1.86416 1.20228 1.45147 1.88435 1.21474 0.93014 0.98099 1.02430 1.22139 0.98818 0.96156 1.00518 1.21130 0.94762 0.91850 0.96206 1.21386 0.99099 1.00965 0.94432 0.75302 0.86390 1.22662 1.20539 0.83683 0.82983 0.73660 0.87039 0.88784 0.90278 0.88201 0.91566 0.92668 0.92590 0.93628 0.75538 0.89795 0.92090 0.87587 0.89496 0.82648 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.50 12.77 -148.98 -1.90 -0.40 16 2 C -0.08 0.32 2.82 71.24 0.20 0.52 16 3 Si 0.77 -3.72 29.79 68.60 2.04 -1.68 16 4 C -0.06 0.20 5.39 -19.87 -0.11 0.10 16 5 C -0.12 0.30 9.61 22.27 0.21 0.51 16 6 C -0.03 0.05 9.52 22.27 0.21 0.26 16 7 C -0.68 0.35 5.95 22.27 0.13 0.48 16 8 S 2.71 7.25 5.74 -56.49 -0.32 6.92 16 9 O -0.98 -8.64 16.75 -128.00 -2.14 -10.79 16 10 O -0.98 -8.43 17.28 -128.00 -2.21 -10.64 16 11 N -1.11 2.62 5.72 -187.48 -1.07 1.55 16 12 C 0.09 -0.45 5.39 86.38 0.47 0.02 16 13 C 0.12 -0.41 0.87 -10.80 -0.01 -0.42 16 14 F -0.22 -0.67 15.60 44.97 0.70 0.03 16 15 C -0.14 0.62 4.87 30.59 0.15 0.77 16 16 C -0.11 0.13 4.98 30.59 0.15 0.28 16 17 C -0.09 0.23 2.43 -10.79 -0.03 0.21 16 18 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 19 C 0.08 -0.16 6.43 71.98 0.46 0.30 16 20 O -0.59 -0.14 13.19 -148.98 -1.97 -2.11 16 21 C -0.11 0.49 5.08 30.61 0.16 0.65 16 22 C -0.14 0.85 5.00 30.61 0.15 1.00 16 23 C -0.02 0.04 9.52 22.27 0.21 0.25 16 24 C -0.14 0.55 8.67 22.27 0.19 0.74 16 25 H 0.40 -4.05 8.70 -74.06 -0.64 -4.70 16 26 H 0.12 -0.45 7.96 -2.39 -0.02 -0.47 16 27 H -0.30 -0.96 7.11 99.48 0.71 -0.26 16 28 H -0.28 0.24 7.11 99.48 0.71 0.94 16 29 H 0.15 -0.63 8.06 -2.91 -0.02 -0.65 16 30 H 0.15 -0.62 7.62 -2.91 -0.02 -0.64 16 31 H 0.43 -1.69 7.40 -96.75 -0.72 -2.41 16 32 H 0.11 -1.18 8.14 -2.38 -0.02 -1.20 16 33 H 0.09 -0.43 7.75 -2.38 -0.02 -0.45 16 34 H 0.08 -0.39 6.90 -2.39 -0.02 -0.41 16 35 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H 0.07 0.07 7.82 -2.39 -0.02 0.05 16 37 H 0.05 0.08 7.80 -2.39 -0.02 0.06 16 38 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.40 -2.98 9.12 -74.06 -0.68 -3.65 16 41 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.06 -0.10 7.80 -2.39 -0.02 -0.12 16 43 H 0.11 -1.06 8.14 -2.39 -0.02 -1.08 16 44 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.16 -0.70 7.62 -2.91 -0.02 -0.72 16 46 H 0.16 -1.27 4.88 -2.91 -0.01 -1.29 16 Total: 0.00 -25.63 382.15 -5.28 -30.92 By element: Atomic # 1 Polarization: -18.51 SS G_CDS: -0.97 Total: -19.48 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 2.56 Total: 5.67 kcal Atomic # 7 Polarization: 2.62 SS G_CDS: -1.07 Total: 1.55 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -8.22 Total: -23.93 kcal Atomic # 9 Polarization: -0.67 SS G_CDS: 0.70 Total: 0.03 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: 2.04 Total: -1.68 kcal Atomic # 16 Polarization: 7.25 SS G_CDS: -0.32 Total: 6.92 kcal Total: -25.63 -5.28 -30.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_13421422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.191 kcal (2) G-P(sol) polarization free energy of solvation -25.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds