Wall clock time and date at job start Mon Mar 8 2021 12:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.47160 * 2 1 4 4 C 1.50702 * 109.47135 * 119.99719 * 2 1 3 5 5 C 1.33390 * 122.53546 * 75.00613 * 4 2 1 6 6 S 1.76193 * 125.20479 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.40403 * 293.26377 * 6 5 4 8 8 O 1.42098 * 106.40145 * 66.18306 * 6 5 4 9 9 N 1.65606 * 107.21910 * 179.72487 * 6 5 4 10 10 C 1.46500 * 120.00055 * 64.99793 * 9 6 5 11 11 C 1.52996 * 109.46863 * 165.00064 * 10 9 6 12 12 F 1.39908 * 109.47019 * 60.00388 * 11 10 9 13 13 C 1.53000 * 109.47077 * 179.97438 * 11 10 9 14 14 C 1.52999 * 109.47394 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47108 * 300.00169 * 14 13 11 16 16 H 1.09002 * 109.47253 * 300.00094 * 15 14 13 17 17 C 1.52998 * 109.47242 * 179.97438 * 15 14 13 18 18 O 1.42902 * 109.46967 * 174.99812 * 17 15 14 19 19 C 1.53004 * 109.46926 * 59.99957 * 15 14 13 20 20 C 1.53001 * 109.47069 * 299.99617 * 19 15 14 21 21 S 1.75889 * 109.59098 * 179.75466 * 5 4 2 22 22 C 1.75888 * 90.97017 * 0.22353 * 21 5 4 23 23 C 1.33385 * 109.59226 * 0.02562 * 22 21 5 24 24 H 0.96697 * 114.00311 * 300.00277 * 1 2 3 25 25 H 1.08999 * 109.47789 * 240.00213 * 2 1 3 26 26 H 1.48501 * 110.00419 * 178.67918 * 3 2 1 27 27 H 1.48500 * 109.99926 * 299.99794 * 3 2 1 28 28 H 0.97002 * 119.99610 * 244.99753 * 9 6 5 29 29 H 1.08996 * 109.46968 * 284.99889 * 10 9 6 30 30 H 1.09002 * 109.46843 * 45.00361 * 10 9 6 31 31 H 1.09005 * 109.47341 * 300.00569 * 13 11 10 32 32 H 1.09001 * 109.47212 * 60.00104 * 13 11 10 33 33 H 1.09001 * 109.47006 * 59.99795 * 14 13 11 34 34 H 1.08998 * 109.47414 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47292 * 295.00544 * 17 15 14 36 36 H 1.09006 * 109.46889 * 55.00559 * 17 15 14 37 37 H 0.96702 * 113.99464 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.47549 * 60.00154 * 19 15 14 39 39 H 1.09002 * 109.47053 * 180.02562 * 19 15 14 40 40 H 1.08991 * 109.47450 * 300.00628 * 20 19 15 41 41 H 1.09003 * 109.47036 * 180.02562 * 20 19 15 42 42 H 1.07995 * 125.19966 * 179.97438 * 22 21 5 43 43 H 1.08004 * 122.53810 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8962 -2.0378 1.3572 6 16 1.2765 -3.1576 0.1463 7 8 -0.1216 -2.9195 0.0575 8 8 2.1526 -3.0677 -0.9690 9 7 1.4525 -4.6868 0.7571 10 6 0.6993 -5.0916 1.9466 11 6 0.7424 -6.6148 2.0836 12 9 2.0712 -7.0344 2.2080 13 6 -0.0438 -7.0376 3.3263 14 6 -0.0001 -8.5608 3.4637 15 6 -0.6238 -9.2028 2.2228 16 1 -1.6592 -8.8762 2.1261 17 6 -0.5796 -10.7260 2.3598 18 8 -1.2651 -11.3235 1.2575 19 6 0.1625 -8.7801 0.9801 20 6 0.1188 -7.2569 0.8427 21 16 2.5701 -2.4996 2.9148 22 6 2.8643 -0.8138 3.3210 23 6 2.4606 -0.0346 2.3165 24 1 -0.3933 0.4417 0.7650 25 1 1.7924 -0.5138 -0.8900 26 1 3.5346 1.7704 0.0322 27 1 1.5615 2.4679 -1.2085 28 1 2.0543 -5.3145 0.3272 29 1 1.1434 -4.6346 2.8308 30 1 -0.3361 -4.7647 1.8497 31 1 0.4007 -6.5805 4.2104 32 1 -1.0791 -6.7106 3.2299 33 1 1.0353 -8.8874 3.5602 34 1 -0.5598 -8.8619 4.3492 35 1 0.4579 -11.0603 2.3670 36 1 -1.0629 -11.0212 3.2913 37 1 -1.2772 -12.2902 1.2792 38 1 1.1979 -9.1067 1.0767 39 1 -0.2821 -9.2371 0.0960 40 1 -0.9166 -6.9303 0.7462 41 1 0.6785 -6.9558 -0.0428 42 1 3.3038 -0.4632 4.2431 43 1 2.5442 1.0418 2.3464 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17664726_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:26 Heat of formation + Delta-G solvation = -173.038340 kcal Electronic energy + Delta-G solvation = -30109.134799 eV Core-core repulsion = 25709.849758 eV Total energy + Delta-G solvation = -4399.285041 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.085 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.81434 -40.10208 -39.73912 -38.18180 -37.61832 -37.11325 -36.79886 -36.24362 -32.40882 -32.01740 -31.52064 -28.12775 -28.01744 -24.95042 -24.40328 -24.00868 -22.01323 -21.62270 -20.84293 -19.94474 -19.79356 -18.62703 -18.30716 -18.23513 -17.50124 -17.21424 -16.74191 -16.61174 -16.39034 -16.09716 -15.90621 -15.82385 -15.61227 -15.41325 -15.20198 -14.81685 -14.39329 -14.28582 -14.25949 -13.96486 -13.85653 -13.72473 -13.41617 -13.22510 -13.08794 -13.05961 -12.95923 -12.80641 -12.63467 -12.57283 -12.25987 -12.21990 -12.09500 -11.79583 -11.63782 -11.30764 -11.20522 -10.92791 -10.81834 -10.58061 -10.48506 -9.73290 -5.14306 -0.72485 -0.71737 0.15453 0.52400 1.12003 1.18258 1.59487 1.84157 1.92158 2.59548 3.02855 3.12405 3.27494 3.33321 3.39458 3.42462 3.48773 3.65170 3.81965 3.86640 3.88897 3.97921 4.04706 4.15157 4.19651 4.25161 4.27427 4.33066 4.42729 4.44859 4.52482 4.55456 4.59774 4.73979 4.76392 4.82367 4.86801 4.96073 4.96255 5.02161 5.14473 5.28360 5.38902 5.69895 6.48890 6.64776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.518 6.518 2 C -0.099 4.099 3 Si 0.708 3.292 4 C 0.005 3.995 5 C -0.769 4.769 6 S 2.716 3.284 7 O -0.922 6.922 8 O -0.948 6.948 9 N -1.117 6.117 10 C 0.093 3.907 11 C 0.120 3.880 12 F -0.199 7.199 13 C -0.138 4.138 14 C -0.114 4.114 15 C -0.090 4.090 16 H 0.081 0.919 17 C 0.079 3.921 18 O -0.573 6.573 19 C -0.113 4.113 20 C -0.142 4.142 21 S 0.205 5.795 22 C -0.163 4.163 23 C -0.157 4.157 24 H 0.382 0.618 25 H 0.123 0.877 26 H -0.251 1.251 27 H -0.245 1.245 28 H 0.425 0.575 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.381 0.619 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.180 0.820 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -0.244 8.059 8.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.323 6.323 2 C -0.212 4.212 3 Si 0.607 3.393 4 C -0.012 4.012 5 C -0.968 4.968 6 S 2.800 3.200 7 O -0.912 6.912 8 O -0.938 6.938 9 N -0.879 5.879 10 C -0.034 4.034 11 C 0.101 3.899 12 F -0.180 7.180 13 C -0.176 4.176 14 C -0.152 4.152 15 C -0.109 4.109 16 H 0.099 0.901 17 C 0.002 3.998 18 O -0.379 6.379 19 C -0.150 4.150 20 C -0.180 4.180 21 S 0.472 5.528 22 C -0.300 4.300 23 C -0.187 4.187 24 H 0.229 0.771 25 H 0.140 0.860 26 H -0.175 1.175 27 H -0.169 1.169 28 H 0.261 0.739 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.197 0.803 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.235 -0.369 7.013 7.027 hybrid contribution 0.814 0.023 0.011 0.814 sum 1.049 -0.346 7.024 7.111 Atomic orbital electron populations 1.86690 1.14991 1.81709 1.48958 1.25411 0.86870 1.12577 0.96299 0.94834 0.81001 0.75914 0.87562 1.19067 0.94080 0.91343 0.96726 1.35735 1.26017 1.14477 1.20615 1.01591 0.74372 0.71585 0.72409 1.93661 1.29114 1.83852 1.84556 1.93634 1.67626 1.85630 1.46943 1.55542 1.58728 1.31405 1.42245 1.22070 0.98352 0.95553 0.87428 1.21069 0.78711 0.92144 0.98004 1.92868 1.36615 1.91347 1.97132 1.22083 1.01508 0.97342 0.96664 1.21483 1.02133 0.93952 0.97597 1.21201 1.00877 0.93472 0.95325 0.90068 1.22204 0.95617 0.93300 0.88712 1.86470 1.78850 1.24905 1.47666 1.21524 1.00869 0.94084 0.98516 1.22167 1.02591 0.96626 0.96589 1.84152 1.55995 1.06031 1.06653 1.26187 1.03427 0.96830 1.03581 1.20209 1.03670 1.01593 0.93238 0.77076 0.85981 1.17517 1.16944 0.73875 0.90511 0.87721 0.89938 0.89298 0.90876 0.90786 0.93554 0.93559 0.77215 0.91370 0.90334 0.89426 0.90338 0.80255 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.00 12.32 -35.88 -0.44 -1.44 16 2 C -0.10 -0.17 2.33 36.01 0.08 -0.08 16 3 Si 0.71 -0.55 30.25 -169.99 -5.14 -5.69 16 4 C 0.01 0.01 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -1.35 6.46 29.04 0.19 -1.16 16 6 S 2.72 8.66 5.07 -107.50 -0.55 8.12 16 7 O -0.92 -5.00 16.93 -59.41 -1.01 -6.00 16 8 O -0.95 -5.87 17.48 -57.17 -1.00 -6.87 16 9 N -1.12 -0.12 5.24 -10.62 -0.06 -0.17 16 10 C 0.09 -0.13 5.17 -4.04 -0.02 -0.15 16 11 C 0.12 -0.15 0.86 -90.62 -0.08 -0.23 16 12 F -0.20 -0.10 15.47 2.25 0.03 -0.06 16 13 C -0.14 0.36 5.00 -26.73 -0.13 0.23 16 14 C -0.11 0.24 5.08 -26.73 -0.14 0.11 16 15 C -0.09 0.09 2.43 -90.62 -0.22 -0.13 16 16 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 17 C 0.08 -0.08 6.43 37.16 0.24 0.16 16 18 O -0.57 -0.20 13.19 -35.23 -0.46 -0.67 16 19 C -0.11 0.03 4.98 -26.73 -0.13 -0.11 16 20 C -0.14 0.11 4.83 -26.73 -0.13 -0.01 16 21 S 0.21 -0.19 21.09 -107.50 -2.27 -2.45 16 22 C -0.16 0.34 11.23 29.04 0.33 0.67 16 23 C -0.16 0.22 8.74 -41.21 -0.36 -0.14 16 24 H 0.38 -1.08 8.70 45.56 0.40 -0.68 16 25 H 0.12 0.40 7.23 -51.93 -0.38 0.03 16 26 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 27 H -0.25 -0.54 7.11 56.52 0.40 -0.13 16 28 H 0.42 -0.37 7.83 -34.47 -0.27 -0.64 16 29 H 0.08 -0.20 6.25 -51.93 -0.32 -0.53 16 30 H 0.10 -0.21 7.75 -51.93 -0.40 -0.62 16 31 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 32 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 33 H 0.07 -0.10 7.80 -51.93 -0.41 -0.51 16 34 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 35 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 36 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 37 H 0.38 -1.37 9.12 45.56 0.42 -0.96 16 38 H 0.07 0.02 7.80 -51.93 -0.41 -0.38 16 39 H 0.08 0.07 7.82 -51.93 -0.41 -0.34 16 40 H 0.09 -0.11 8.14 -51.93 -0.42 -0.54 16 41 H 0.08 -0.06 7.20 -51.93 -0.37 -0.43 16 42 H 0.18 -0.90 8.06 -52.49 -0.42 -1.32 16 43 H 0.16 -0.68 5.73 -52.48 -0.30 -0.98 16 LS Contribution 368.22 15.07 5.55 5.55 Total: 0.00 -11.34 368.22 -11.29 -22.63 By element: Atomic # 1 Polarization: -6.49 SS G_CDS: -5.03 Total: -11.52 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.92 Total: -1.40 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -0.06 Total: -0.17 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -2.91 Total: -14.98 kcal Atomic # 9 Polarization: -0.10 SS G_CDS: 0.03 Total: -0.06 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: -5.14 Total: -5.69 kcal Atomic # 16 Polarization: 8.48 SS G_CDS: -2.81 Total: 5.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -11.34 -11.29 -22.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.410 kcal (2) G-P(sol) polarization free energy of solvation -11.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds