Wall clock time and date at job start Mon Mar 8 2021 12:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.47160 * 2 1 4 4 C 1.50702 * 109.47135 * 119.99719 * 2 1 3 5 5 C 1.33390 * 122.53546 * 75.00613 * 4 2 1 6 6 S 1.76193 * 125.20479 * 0.02562 * 5 4 2 7 7 O 1.42105 * 106.40403 * 293.26377 * 6 5 4 8 8 O 1.42098 * 106.40145 * 66.18306 * 6 5 4 9 9 N 1.65606 * 107.21910 * 179.72487 * 6 5 4 10 10 C 1.46500 * 120.00055 * 64.99793 * 9 6 5 11 11 C 1.52996 * 109.46863 * 165.00064 * 10 9 6 12 12 F 1.39908 * 109.47019 * 60.00388 * 11 10 9 13 13 C 1.53000 * 109.47077 * 179.97438 * 11 10 9 14 14 C 1.52999 * 109.47394 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47108 * 300.00169 * 14 13 11 16 16 H 1.09002 * 109.47253 * 300.00094 * 15 14 13 17 17 C 1.52998 * 109.47242 * 179.97438 * 15 14 13 18 18 O 1.42902 * 109.46967 * 174.99812 * 17 15 14 19 19 C 1.53004 * 109.46926 * 59.99957 * 15 14 13 20 20 C 1.53001 * 109.47069 * 299.99617 * 19 15 14 21 21 S 1.75889 * 109.59098 * 179.75466 * 5 4 2 22 22 C 1.75888 * 90.97017 * 0.22353 * 21 5 4 23 23 C 1.33385 * 109.59226 * 0.02562 * 22 21 5 24 24 H 0.96697 * 114.00311 * 300.00277 * 1 2 3 25 25 H 1.08999 * 109.47789 * 240.00213 * 2 1 3 26 26 H 1.48501 * 110.00419 * 178.67918 * 3 2 1 27 27 H 1.48500 * 109.99926 * 299.99794 * 3 2 1 28 28 H 0.97002 * 119.99610 * 244.99753 * 9 6 5 29 29 H 1.08996 * 109.46968 * 284.99889 * 10 9 6 30 30 H 1.09002 * 109.46843 * 45.00361 * 10 9 6 31 31 H 1.09005 * 109.47341 * 300.00569 * 13 11 10 32 32 H 1.09001 * 109.47212 * 60.00104 * 13 11 10 33 33 H 1.09001 * 109.47006 * 59.99795 * 14 13 11 34 34 H 1.08998 * 109.47414 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47292 * 295.00544 * 17 15 14 36 36 H 1.09006 * 109.46889 * 55.00559 * 17 15 14 37 37 H 0.96702 * 113.99464 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.47549 * 60.00154 * 19 15 14 39 39 H 1.09002 * 109.47053 * 180.02562 * 19 15 14 40 40 H 1.08991 * 109.47450 * 300.00628 * 20 19 15 41 41 H 1.09003 * 109.47036 * 180.02562 * 20 19 15 42 42 H 1.07995 * 125.19966 * 179.97438 * 22 21 5 43 43 H 1.08004 * 122.53810 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8962 -2.0378 1.3572 6 16 1.2765 -3.1576 0.1463 7 8 -0.1216 -2.9195 0.0575 8 8 2.1526 -3.0677 -0.9690 9 7 1.4525 -4.6868 0.7571 10 6 0.6993 -5.0916 1.9466 11 6 0.7424 -6.6148 2.0836 12 9 2.0712 -7.0344 2.2080 13 6 -0.0438 -7.0376 3.3263 14 6 -0.0001 -8.5608 3.4637 15 6 -0.6238 -9.2028 2.2228 16 1 -1.6592 -8.8762 2.1261 17 6 -0.5796 -10.7260 2.3598 18 8 -1.2651 -11.3235 1.2575 19 6 0.1625 -8.7801 0.9801 20 6 0.1188 -7.2569 0.8427 21 16 2.5701 -2.4996 2.9148 22 6 2.8643 -0.8138 3.3210 23 6 2.4606 -0.0346 2.3165 24 1 -0.3933 0.4417 0.7650 25 1 1.7924 -0.5138 -0.8900 26 1 3.5346 1.7704 0.0322 27 1 1.5615 2.4679 -1.2085 28 1 2.0543 -5.3145 0.3272 29 1 1.1434 -4.6346 2.8308 30 1 -0.3361 -4.7647 1.8497 31 1 0.4007 -6.5805 4.2104 32 1 -1.0791 -6.7106 3.2299 33 1 1.0353 -8.8874 3.5602 34 1 -0.5598 -8.8619 4.3492 35 1 0.4579 -11.0603 2.3670 36 1 -1.0629 -11.0212 3.2913 37 1 -1.2772 -12.2902 1.2792 38 1 1.1979 -9.1067 1.0767 39 1 -0.2821 -9.2371 0.0960 40 1 -0.9166 -6.9303 0.7462 41 1 0.6785 -6.9558 -0.0428 42 1 3.3038 -0.4632 4.2431 43 1 2.5442 1.0418 2.3464 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664726_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:26 Heat of formation + Delta-G solvation = -179.814803 kcal Electronic energy + Delta-G solvation = -30109.428648 eV Core-core repulsion = 25709.849758 eV Total energy + Delta-G solvation = -4399.578891 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.085 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.79294 -40.07579 -39.65734 -38.49834 -37.59638 -37.21419 -37.06677 -36.23303 -32.35112 -31.92636 -31.45830 -28.14044 -28.00039 -24.89345 -24.34869 -23.89394 -21.95484 -21.65785 -20.76930 -20.02863 -19.81234 -18.75558 -18.27766 -18.25163 -17.58586 -17.16501 -16.79486 -16.66199 -16.43529 -16.12590 -15.88814 -15.80752 -15.56191 -15.39921 -15.15139 -14.77183 -14.29287 -14.27127 -14.22759 -13.97055 -13.84557 -13.70553 -13.54140 -13.41503 -13.30607 -13.15690 -13.00057 -12.77878 -12.72628 -12.54062 -12.34170 -12.15615 -12.03251 -11.80946 -11.56086 -11.23650 -11.11953 -10.88095 -10.77330 -10.63445 -10.42695 -9.64420 -5.11193 -0.90922 -0.69106 0.18193 0.64643 1.12955 1.27033 1.61554 1.74545 1.91940 2.40364 3.10889 3.22327 3.30497 3.37774 3.42384 3.49037 3.54890 3.60893 3.89593 3.95927 3.98789 4.09830 4.18333 4.24704 4.25884 4.29486 4.37229 4.44163 4.50447 4.57060 4.62413 4.69333 4.71410 4.84828 4.87861 4.94303 5.01552 5.03519 5.09048 5.12314 5.24486 5.32948 5.46577 5.69197 6.65158 6.87548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.127 4.127 3 Si 0.824 3.176 4 C -0.001 4.001 5 C -0.800 4.800 6 S 2.725 3.275 7 O -0.955 6.955 8 O -0.991 6.991 9 N -1.110 6.110 10 C 0.087 3.913 11 C 0.122 3.878 12 F -0.209 7.209 13 C -0.138 4.138 14 C -0.110 4.110 15 C -0.091 4.091 16 H 0.076 0.924 17 C 0.076 3.924 18 O -0.596 6.596 19 C -0.109 4.109 20 C -0.146 4.146 21 S 0.222 5.778 22 C -0.147 4.147 23 C -0.168 4.168 24 H 0.400 0.600 25 H 0.093 0.907 26 H -0.274 1.274 27 H -0.291 1.291 28 H 0.428 0.572 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.395 0.605 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.216 0.784 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 0.652 10.873 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.236 4.236 3 Si 0.725 3.275 4 C -0.019 4.019 5 C -1.003 5.003 6 S 2.813 3.187 7 O -0.944 6.944 8 O -0.981 6.981 9 N -0.874 5.874 10 C -0.040 4.040 11 C 0.103 3.897 12 F -0.190 7.190 13 C -0.176 4.176 14 C -0.148 4.148 15 C -0.109 4.109 16 H 0.095 0.905 17 C -0.001 4.001 18 O -0.404 6.404 19 C -0.147 4.147 20 C -0.184 4.184 21 S 0.488 5.512 22 C -0.284 4.284 23 C -0.197 4.197 24 H 0.251 0.749 25 H 0.111 0.889 26 H -0.201 1.201 27 H -0.218 1.218 28 H 0.266 0.734 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.245 0.755 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.572 0.459 9.831 9.859 hybrid contribution 0.704 -0.313 -0.856 1.152 sum 1.276 0.146 8.975 9.067 Atomic orbital electron populations 1.86640 1.15405 1.82424 1.50407 1.25822 0.86957 1.15045 0.95808 0.93635 0.77537 0.71463 0.84831 1.19290 0.94073 0.91364 0.97214 1.35413 1.28309 1.14572 1.21967 1.00794 0.73384 0.72122 0.72370 1.93609 1.30813 1.84609 1.85409 1.93569 1.68299 1.86482 1.49768 1.55283 1.59009 1.30304 1.42806 1.22299 0.98769 0.95658 0.87232 1.21135 0.78267 0.91907 0.98431 1.92848 1.37520 1.91467 1.97183 1.22148 1.02118 0.97069 0.96289 1.21462 1.01777 0.94167 0.97378 1.21219 1.00465 0.93774 0.95449 0.90515 1.22290 0.95774 0.93204 0.88843 1.86432 1.79094 1.26468 1.48430 1.21458 1.00370 0.94354 0.98495 1.22199 1.02898 0.96352 0.96915 1.84034 1.55276 1.07289 1.04579 1.26690 1.01686 0.95649 1.04390 1.20454 1.03635 1.03196 0.92387 0.74921 0.88932 1.20061 1.21843 0.73411 0.88852 0.87054 0.88473 0.88009 0.91527 0.89409 0.93379 0.92347 0.75536 0.92146 0.91905 0.88959 0.90987 0.76693 0.79361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.89 12.32 -148.36 -1.83 -4.72 16 2 C -0.13 -0.60 2.33 71.24 0.17 -0.43 16 3 Si 0.82 -1.40 30.25 68.60 2.08 0.68 16 4 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 5 C -0.80 -3.38 6.46 66.72 0.43 -2.95 16 6 S 2.73 23.51 5.07 -56.49 -0.29 23.23 16 7 O -0.95 -12.71 16.93 -125.86 -2.13 -14.84 16 8 O -0.99 -15.53 17.48 -128.00 -2.24 -17.77 16 9 N -1.11 -1.86 5.24 -187.50 -0.98 -2.85 16 10 C 0.09 -0.21 5.17 86.38 0.45 0.23 16 11 C 0.12 -0.29 0.86 -10.79 -0.01 -0.30 16 12 F -0.21 -0.28 15.47 44.97 0.70 0.42 16 13 C -0.14 0.85 5.00 30.59 0.15 1.00 16 14 C -0.11 0.53 5.08 30.59 0.16 0.69 16 15 C -0.09 0.14 2.43 -10.79 -0.03 0.12 16 16 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 17 C 0.08 -0.13 6.43 71.98 0.46 0.33 16 18 O -0.60 -0.81 13.19 -148.98 -1.97 -2.77 16 19 C -0.11 -0.10 4.98 30.60 0.15 0.05 16 20 C -0.15 0.06 4.83 30.60 0.15 0.21 16 21 S 0.22 -0.65 21.09 -56.49 -1.19 -1.84 16 22 C -0.15 1.02 11.23 66.72 0.75 1.76 16 23 C -0.17 0.78 8.74 21.21 0.19 0.97 16 24 H 0.40 -2.05 8.70 -74.06 -0.64 -2.69 16 25 H 0.09 0.92 7.23 -2.39 -0.02 0.90 16 26 H -0.27 -0.57 7.11 99.48 0.71 0.14 16 27 H -0.29 -1.61 7.11 99.48 0.71 -0.90 16 28 H 0.43 0.07 7.83 -96.74 -0.76 -0.69 16 29 H 0.09 -0.55 6.25 -2.39 -0.01 -0.56 16 30 H 0.11 -0.41 7.75 -2.39 -0.02 -0.43 16 31 H 0.10 -0.84 8.14 -2.38 -0.02 -0.86 16 32 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 33 H 0.07 -0.21 7.80 -2.39 -0.02 -0.23 16 34 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 37 H 0.40 -2.64 9.12 -74.06 -0.68 -3.32 16 38 H 0.06 0.13 7.80 -2.39 -0.02 0.11 16 39 H 0.06 0.24 7.82 -2.39 -0.02 0.22 16 40 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.07 0.04 7.20 -2.39 -0.02 0.02 16 42 H 0.22 -3.10 8.06 -2.91 -0.02 -3.13 16 43 H 0.19 -2.19 5.73 -2.91 -0.02 -2.21 16 Total: 0.00 -28.77 368.22 -5.91 -34.68 By element: Atomic # 1 Polarization: -14.83 SS G_CDS: -0.96 Total: -15.79 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 2.91 Total: 1.58 kcal Atomic # 7 Polarization: -1.86 SS G_CDS: -0.98 Total: -2.85 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -8.16 Total: -40.10 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.70 Total: 0.42 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: 2.08 Total: 0.68 kcal Atomic # 16 Polarization: 22.87 SS G_CDS: -1.48 Total: 21.39 kcal Total: -28.77 -5.91 -34.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.134 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds