Wall clock time and date at job start Mon Mar 8 2021 12:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86295 * 109.47115 * 2 1 4 4 C 1.50705 * 109.47234 * 120.00149 * 2 1 3 5 5 C 1.33390 * 125.20054 * 38.73730 * 4 2 1 6 6 S 1.76195 * 122.54351 * 359.97438 * 5 4 2 7 7 O 1.42097 * 106.40024 * 52.87766 * 6 5 4 8 8 O 1.42106 * 106.40205 * 279.95718 * 6 5 4 9 9 N 1.65595 * 107.22005 * 166.42194 * 6 5 4 10 10 C 1.46496 * 120.00269 * 68.37643 * 9 6 5 11 11 C 1.53008 * 109.47192 * 163.60330 * 10 9 6 12 12 F 1.39898 * 109.47097 * 305.00442 * 11 10 9 13 13 C 1.52998 * 109.46694 * 65.00426 * 11 10 9 14 14 C 1.53005 * 109.47000 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47277 * 300.00076 * 14 13 11 16 16 H 1.09004 * 109.47314 * 300.00125 * 15 14 13 17 17 C 1.52999 * 109.47326 * 179.97438 * 15 14 13 18 18 O 1.42904 * 109.46572 * 65.00365 * 17 15 14 19 19 C 1.53004 * 109.47011 * 59.99768 * 15 14 13 20 20 C 1.52995 * 109.47335 * 299.99860 * 19 15 14 21 21 C 1.38428 * 114.91395 * 180.25054 * 5 4 2 22 22 C 1.33390 * 114.92437 * 359.49389 * 21 5 4 23 23 S 1.75881 * 125.20082 * 218.71581 * 4 2 1 24 24 H 0.96690 * 113.99886 * 64.96465 * 1 2 3 25 25 H 1.08997 * 109.46807 * 239.99862 * 2 1 3 26 26 H 1.48496 * 109.99863 * 298.68087 * 3 2 1 27 27 H 1.48501 * 109.99934 * 60.00127 * 3 2 1 28 28 H 0.96998 * 119.99909 * 248.38197 * 9 6 5 29 29 H 1.09003 * 109.47122 * 43.60616 * 10 9 6 30 30 H 1.08994 * 109.47830 * 283.60611 * 10 9 6 31 31 H 1.08996 * 109.47134 * 299.99786 * 13 11 10 32 32 H 1.08998 * 109.47601 * 60.00100 * 13 11 10 33 33 H 1.09003 * 109.46549 * 60.00209 * 14 13 11 34 34 H 1.08994 * 109.47255 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47187 * 184.99982 * 17 15 14 36 36 H 1.08995 * 109.47433 * 305.00497 * 17 15 14 37 37 H 0.96699 * 113.99955 * 180.02562 * 18 17 15 38 38 H 1.09006 * 109.47014 * 180.02562 * 19 15 14 39 39 H 1.08999 * 109.47094 * 60.00414 * 19 15 14 40 40 H 1.08997 * 109.47852 * 179.97438 * 20 19 15 41 41 H 1.08999 * 109.47482 * 300.00316 * 20 19 15 42 42 H 1.08010 * 122.53552 * 179.72974 * 21 5 4 43 43 H 1.07995 * 125.20362 * 180.20960 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.3862 -1.8053 1.7627 6 16 -0.0359 -2.5861 1.0752 7 8 0.2564 -2.8163 -0.2962 8 8 -1.1586 -1.8340 1.5150 9 7 -0.1663 -4.0777 1.7824 10 6 -0.5080 -4.1877 3.2027 11 6 -0.9620 -5.6164 3.5089 12 9 -2.0127 -5.9652 2.6537 13 6 0.2081 -6.5794 3.2985 14 6 -0.2456 -8.0080 3.6053 15 6 -0.7201 -8.0917 5.0574 16 1 0.0988 -7.8196 5.7235 17 6 -1.1744 -9.5201 5.3640 18 8 -0.0547 -10.4042 5.2807 19 6 -1.8902 -7.1286 5.2679 20 6 -1.4365 -5.7000 4.9611 21 6 2.0187 -2.2782 2.8996 22 6 3.0839 -1.5735 3.2844 23 16 3.3266 -0.2230 2.1840 24 1 -0.3933 0.3738 -0.8003 25 1 1.7923 -0.5138 -0.8900 26 1 1.5879 2.4584 -1.2242 27 1 1.5615 2.4678 1.2085 28 1 -0.0163 -4.8787 1.2562 29 1 -1.3138 -3.4922 3.4374 30 1 0.3669 -3.9471 3.8067 31 1 0.5464 -6.5195 2.2640 32 1 1.0268 -6.3076 3.9648 33 1 -1.0644 -8.2801 2.9392 34 1 0.5878 -8.6941 3.4549 35 1 -1.5947 -9.5599 6.3689 36 1 -1.9316 -9.8237 4.6412 37 1 -0.2695 -11.3292 5.4633 38 1 -2.2279 -7.1879 6.3026 39 1 -2.7090 -7.4007 4.6019 40 1 -2.2701 -5.0139 5.1106 41 1 -0.6176 -5.4279 5.6271 42 1 1.6780 -3.1538 3.4323 43 1 3.7001 -1.7955 4.1431 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17664726_14772022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:30 Heat of formation + Delta-G solvation = -168.423592 kcal Electronic energy + Delta-G solvation = -30289.992071 eV Core-core repulsion = 25890.907141 eV Total energy + Delta-G solvation = -4399.084931 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.085 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -48.71609 -39.76168 -39.54809 -38.08710 -37.77835 -37.51379 -36.54732 -36.14570 -32.39290 -32.05481 -31.92806 -28.04311 -27.52380 -24.99482 -24.35254 -24.01936 -21.93411 -21.65930 -20.82574 -20.20343 -19.01924 -18.66232 -18.32331 -18.26074 -17.68648 -17.44023 -17.24793 -16.43502 -16.38461 -16.11356 -15.79714 -15.69897 -15.43032 -15.19447 -15.06373 -14.71544 -14.37225 -14.30509 -14.15078 -14.04873 -13.81484 -13.69995 -13.35194 -13.10169 -13.08887 -13.02586 -12.83529 -12.77762 -12.67691 -12.56871 -12.22185 -12.17125 -12.06293 -11.65407 -11.63480 -11.28628 -11.17930 -11.00804 -10.90511 -10.66312 -10.06364 -9.74054 -5.23346 -0.56620 -0.46800 0.31647 0.63585 0.98592 1.16706 1.46878 1.81258 2.02967 2.84956 2.96860 3.05500 3.17634 3.31326 3.38485 3.42451 3.49247 3.69772 3.84195 3.90621 3.94771 4.00140 4.11414 4.16916 4.20499 4.25953 4.30943 4.32783 4.46294 4.49681 4.51548 4.61774 4.68905 4.76431 4.82468 4.84215 4.86410 4.91938 5.02524 5.08534 5.14656 5.26493 5.37899 5.84786 6.19756 6.63159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.079 4.079 3 Si 0.679 3.321 4 C -0.056 4.056 5 C -0.664 4.664 6 S 2.723 3.277 7 O -0.952 6.952 8 O -0.935 6.935 9 N -1.119 6.119 10 C 0.090 3.910 11 C 0.119 3.881 12 F -0.197 7.197 13 C -0.142 4.142 14 C -0.113 4.113 15 C -0.089 4.089 16 H 0.080 0.920 17 C 0.079 3.921 18 O -0.574 6.574 19 C -0.115 4.115 20 C -0.138 4.138 21 C -0.093 4.093 22 C -0.210 4.210 23 S 0.168 5.832 24 H 0.399 0.601 25 H 0.111 0.889 26 H -0.234 1.234 27 H -0.236 1.236 28 H 0.421 0.579 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.381 0.619 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.153 0.847 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 -1.469 3.346 5.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.189 4.189 3 Si 0.575 3.425 4 C -0.176 4.176 5 C -0.762 4.762 6 S 2.808 3.192 7 O -0.943 6.943 8 O -0.925 6.925 9 N -0.880 5.880 10 C -0.036 4.036 11 C 0.099 3.901 12 F -0.177 7.177 13 C -0.179 4.179 14 C -0.150 4.150 15 C -0.107 4.107 16 H 0.098 0.902 17 C 0.001 3.999 18 O -0.380 6.380 19 C -0.153 4.153 20 C -0.177 4.177 21 C -0.121 4.121 22 C -0.345 4.345 23 S 0.432 5.568 24 H 0.250 0.750 25 H 0.129 0.871 26 H -0.157 1.157 27 H -0.160 1.160 28 H 0.256 0.744 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.228 0.772 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.170 0.830 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.010 1.390 3.191 6.101 hybrid contribution -1.723 -2.233 -0.021 2.820 sum 3.288 -0.843 3.170 4.644 Atomic orbital electron populations 1.86492 1.16348 1.84882 1.46675 1.24678 0.85662 1.12028 0.96550 0.95397 0.90276 0.73615 0.83259 1.23695 0.99014 0.96245 0.98671 1.29871 1.25740 1.10389 1.10183 1.01360 0.73472 0.71576 0.72777 1.93568 1.85524 1.84776 1.30390 1.93595 1.47231 1.69459 1.82169 1.55593 1.87158 1.25875 1.19360 1.22116 1.01926 0.98107 0.81485 1.21089 0.85797 0.93491 0.89708 1.92878 1.59321 1.93215 1.72299 1.22177 0.96977 0.95385 1.03410 1.21514 1.02133 0.95574 0.95788 1.21188 0.98577 0.93219 0.97761 0.90178 1.22211 0.88165 0.89937 0.99571 1.86458 1.35634 1.21625 1.94236 1.21494 0.97972 0.93288 1.02519 1.22092 1.03012 0.98634 0.93933 1.19858 0.95696 1.01411 0.95135 1.25902 1.03387 1.00309 1.04938 1.84185 1.25704 1.27791 1.19116 0.75001 0.87143 1.15710 1.15971 0.74354 0.88417 0.89808 0.90429 0.89656 0.91302 0.90377 0.93544 0.93501 0.77201 0.90813 0.90814 0.89807 0.89494 0.82992 0.80579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.52 9.45 -60.13 -0.57 -2.09 16 2 C -0.08 -0.10 2.39 36.01 0.09 -0.01 16 3 Si 0.68 -0.42 31.27 -169.99 -5.32 -5.74 16 4 C -0.06 -0.12 5.77 -36.00 -0.21 -0.33 16 5 C -0.66 -1.62 5.71 -41.21 -0.24 -1.85 16 6 S 2.72 9.98 4.22 -107.50 -0.45 9.53 16 7 O -0.95 -5.49 17.15 -61.99 -1.06 -6.55 16 8 O -0.93 -6.38 16.17 -65.18 -1.05 -7.43 16 9 N -1.12 -0.48 5.44 -10.61 -0.06 -0.54 16 10 C 0.09 -0.09 4.90 -4.04 -0.02 -0.11 16 11 C 0.12 -0.12 0.88 -90.61 -0.08 -0.20 16 12 F -0.20 -0.38 15.60 2.25 0.04 -0.34 16 13 C -0.14 0.26 4.87 -26.73 -0.13 0.13 16 14 C -0.11 0.08 4.98 -26.73 -0.13 -0.06 16 15 C -0.09 0.11 2.43 -90.62 -0.22 -0.11 16 16 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 17 C 0.08 -0.09 6.43 37.16 0.24 0.15 16 18 O -0.57 -0.03 13.20 -35.23 -0.46 -0.49 16 19 C -0.12 0.21 5.08 -26.73 -0.14 0.07 16 20 C -0.14 0.31 5.00 -26.73 -0.13 0.17 16 21 C -0.09 0.00 9.52 -41.21 -0.39 -0.39 16 22 C -0.21 0.20 11.23 29.04 0.33 0.53 16 23 S 0.17 -0.07 20.88 -107.50 -2.24 -2.32 16 24 H 0.40 -0.62 8.86 45.56 0.40 -0.22 16 25 H 0.11 -0.06 7.96 -51.93 -0.41 -0.47 16 26 H -0.23 -0.10 7.11 56.52 0.40 0.30 16 27 H -0.24 -0.54 7.11 56.52 0.40 -0.14 16 28 H 0.42 -0.33 7.39 -34.46 -0.25 -0.59 16 29 H 0.10 -0.03 7.65 -51.93 -0.40 -0.43 16 30 H 0.08 -0.32 5.37 -51.93 -0.28 -0.60 16 31 H 0.08 -0.16 6.88 -51.93 -0.36 -0.52 16 32 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 33 H 0.07 0.02 7.80 -51.93 -0.41 -0.39 16 34 H 0.08 0.01 7.82 -51.93 -0.41 -0.39 16 35 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 36 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 37 H 0.38 -1.46 9.12 45.56 0.42 -1.05 16 38 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 39 H 0.07 -0.06 7.80 -51.93 -0.41 -0.47 16 40 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 41 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 42 H 0.15 -0.43 4.83 -52.48 -0.25 -0.69 16 43 H 0.18 -0.66 8.06 -52.49 -0.42 -1.08 16 LS Contribution 363.30 15.07 5.47 5.47 Total: 0.00 -11.73 363.30 -11.68 -23.42 By element: Atomic # 1 Polarization: -5.98 SS G_CDS: -4.93 Total: -10.91 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.04 Total: -2.01 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -0.06 Total: -0.54 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -3.15 Total: -16.57 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.04 Total: -0.34 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: -5.32 Total: -5.74 kcal Atomic # 16 Polarization: 9.91 SS G_CDS: -2.70 Total: 7.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -11.73 -11.68 -23.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_14772022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.009 kcal (2) G-P(sol) polarization free energy of solvation -11.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds