Wall clock time and date at job start Mon Mar 8 2021 12:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86295 * 109.47115 * 2 1 4 4 C 1.50705 * 109.47234 * 120.00149 * 2 1 3 5 5 C 1.33390 * 125.20054 * 38.73730 * 4 2 1 6 6 S 1.76195 * 122.54351 * 359.97438 * 5 4 2 7 7 O 1.42097 * 106.40024 * 52.87766 * 6 5 4 8 8 O 1.42106 * 106.40205 * 279.95718 * 6 5 4 9 9 N 1.65595 * 107.22005 * 166.42194 * 6 5 4 10 10 C 1.46496 * 120.00269 * 68.37643 * 9 6 5 11 11 C 1.53008 * 109.47192 * 163.60330 * 10 9 6 12 12 F 1.39898 * 109.47097 * 305.00442 * 11 10 9 13 13 C 1.52998 * 109.46694 * 65.00426 * 11 10 9 14 14 C 1.53005 * 109.47000 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47277 * 300.00076 * 14 13 11 16 16 H 1.09004 * 109.47314 * 300.00125 * 15 14 13 17 17 C 1.52999 * 109.47326 * 179.97438 * 15 14 13 18 18 O 1.42904 * 109.46572 * 65.00365 * 17 15 14 19 19 C 1.53004 * 109.47011 * 59.99768 * 15 14 13 20 20 C 1.52995 * 109.47335 * 299.99860 * 19 15 14 21 21 C 1.38428 * 114.91395 * 180.25054 * 5 4 2 22 22 C 1.33390 * 114.92437 * 359.49389 * 21 5 4 23 23 S 1.75881 * 125.20082 * 218.71581 * 4 2 1 24 24 H 0.96690 * 113.99886 * 64.96465 * 1 2 3 25 25 H 1.08997 * 109.46807 * 239.99862 * 2 1 3 26 26 H 1.48496 * 109.99863 * 298.68087 * 3 2 1 27 27 H 1.48501 * 109.99934 * 60.00127 * 3 2 1 28 28 H 0.96998 * 119.99909 * 248.38197 * 9 6 5 29 29 H 1.09003 * 109.47122 * 43.60616 * 10 9 6 30 30 H 1.08994 * 109.47830 * 283.60611 * 10 9 6 31 31 H 1.08996 * 109.47134 * 299.99786 * 13 11 10 32 32 H 1.08998 * 109.47601 * 60.00100 * 13 11 10 33 33 H 1.09003 * 109.46549 * 60.00209 * 14 13 11 34 34 H 1.08994 * 109.47255 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47187 * 184.99982 * 17 15 14 36 36 H 1.08995 * 109.47433 * 305.00497 * 17 15 14 37 37 H 0.96699 * 113.99955 * 180.02562 * 18 17 15 38 38 H 1.09006 * 109.47014 * 180.02562 * 19 15 14 39 39 H 1.08999 * 109.47094 * 60.00414 * 19 15 14 40 40 H 1.08997 * 109.47852 * 179.97438 * 20 19 15 41 41 H 1.08999 * 109.47482 * 300.00316 * 20 19 15 42 42 H 1.08010 * 122.53552 * 179.72974 * 21 5 4 43 43 H 1.07995 * 125.20362 * 180.20960 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 1.3862 -1.8053 1.7627 6 16 -0.0359 -2.5861 1.0752 7 8 0.2564 -2.8163 -0.2962 8 8 -1.1586 -1.8340 1.5150 9 7 -0.1663 -4.0777 1.7824 10 6 -0.5080 -4.1877 3.2027 11 6 -0.9620 -5.6164 3.5089 12 9 -2.0127 -5.9652 2.6537 13 6 0.2081 -6.5794 3.2985 14 6 -0.2456 -8.0080 3.6053 15 6 -0.7201 -8.0917 5.0574 16 1 0.0988 -7.8196 5.7235 17 6 -1.1744 -9.5201 5.3640 18 8 -0.0547 -10.4042 5.2807 19 6 -1.8902 -7.1286 5.2679 20 6 -1.4365 -5.7000 4.9611 21 6 2.0187 -2.2782 2.8996 22 6 3.0839 -1.5735 3.2844 23 16 3.3266 -0.2230 2.1840 24 1 -0.3933 0.3738 -0.8003 25 1 1.7923 -0.5138 -0.8900 26 1 1.5879 2.4584 -1.2242 27 1 1.5615 2.4678 1.2085 28 1 -0.0163 -4.8787 1.2562 29 1 -1.3138 -3.4922 3.4374 30 1 0.3669 -3.9471 3.8067 31 1 0.5464 -6.5195 2.2640 32 1 1.0268 -6.3076 3.9648 33 1 -1.0644 -8.2801 2.9392 34 1 0.5878 -8.6941 3.4549 35 1 -1.5947 -9.5599 6.3689 36 1 -1.9316 -9.8237 4.6412 37 1 -0.2695 -11.3292 5.4633 38 1 -2.2279 -7.1879 6.3026 39 1 -2.7090 -7.4007 4.6019 40 1 -2.2701 -5.0139 5.1106 41 1 -0.6176 -5.4279 5.6271 42 1 1.6780 -3.1538 3.4323 43 1 3.7001 -1.7955 4.1431 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664726_14772022.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:29 Heat of formation + Delta-G solvation = -173.987756 kcal Electronic energy + Delta-G solvation = -30290.233351 eV Core-core repulsion = 25890.907141 eV Total energy + Delta-G solvation = -4399.326211 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.085 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.74363 -39.66846 -39.55437 -38.32137 -37.92467 -37.48294 -36.88820 -36.13507 -32.33020 -31.97038 -31.86794 -27.97397 -27.54694 -24.92092 -24.35633 -23.88637 -21.85681 -21.68781 -20.73040 -20.32729 -19.08638 -18.76266 -18.36253 -18.24033 -17.70420 -17.54070 -17.21780 -16.48736 -16.36401 -16.16799 -15.81623 -15.63765 -15.40883 -15.22252 -15.05823 -14.65735 -14.36582 -14.26467 -14.10227 -14.08707 -13.79032 -13.66523 -13.37992 -13.22630 -13.16440 -13.10529 -13.05383 -12.95290 -12.65346 -12.60884 -12.29021 -12.09625 -11.98828 -11.70363 -11.53620 -11.19509 -11.08228 -11.04485 -10.81221 -10.64355 -10.06730 -9.68696 -5.20569 -0.76391 -0.49241 0.33140 0.66963 1.00585 1.18370 1.48893 1.80345 1.92274 2.65536 2.98901 3.17465 3.29424 3.38089 3.41542 3.50510 3.62141 3.66567 3.91016 3.98774 4.06968 4.10986 4.17228 4.27257 4.30449 4.33638 4.42499 4.47844 4.58611 4.61348 4.62164 4.74144 4.75862 4.86798 4.90072 4.97990 5.04864 5.05318 5.15017 5.16037 5.27575 5.35445 5.48829 5.85540 6.27824 6.87822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.102 4.102 3 Si 0.764 3.236 4 C -0.088 4.088 5 C -0.676 4.676 6 S 2.732 3.268 7 O -0.984 6.984 8 O -0.977 6.977 9 N -1.111 6.111 10 C 0.083 3.917 11 C 0.115 3.885 12 F -0.218 7.218 13 C -0.141 4.141 14 C -0.111 4.111 15 C -0.087 4.087 16 H 0.084 0.916 17 C 0.076 3.924 18 O -0.593 6.593 19 C -0.113 4.113 20 C -0.139 4.139 21 C -0.106 4.106 22 C -0.204 4.204 23 S 0.197 5.803 24 H 0.411 0.589 25 H 0.121 0.879 26 H -0.249 1.249 27 H -0.278 1.278 28 H 0.426 0.574 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.395 0.605 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.111 0.889 42 H 0.178 0.822 43 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 -1.471 4.940 8.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.210 4.210 3 Si 0.661 3.339 4 C -0.209 4.209 5 C -0.778 4.778 6 S 2.821 3.179 7 O -0.974 6.974 8 O -0.966 6.966 9 N -0.875 5.875 10 C -0.043 4.043 11 C 0.096 3.904 12 F -0.199 7.199 13 C -0.178 4.178 14 C -0.148 4.148 15 C -0.106 4.106 16 H 0.102 0.898 17 C -0.002 4.002 18 O -0.401 6.401 19 C -0.150 4.150 20 C -0.177 4.177 21 C -0.134 4.134 22 C -0.340 4.340 23 S 0.460 5.540 24 H 0.264 0.736 25 H 0.139 0.861 26 H -0.173 1.173 27 H -0.204 1.204 28 H 0.263 0.737 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.244 0.756 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.130 0.870 42 H 0.195 0.805 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.764 1.340 4.754 8.375 hybrid contribution -2.259 -2.264 -0.468 3.232 sum 4.504 -0.924 4.286 6.285 Atomic orbital electron populations 1.86461 1.17637 1.85411 1.47822 1.25134 0.84952 1.13902 0.97034 0.94521 0.88770 0.70570 0.79995 1.24071 1.00477 0.96762 0.99594 1.29725 1.25525 1.10943 1.11594 1.00612 0.73336 0.71753 0.72209 1.93511 1.85963 1.85327 1.32626 1.93540 1.49619 1.70819 1.82650 1.55310 1.87139 1.24856 1.20191 1.22362 1.03174 0.97933 0.80802 1.21311 0.85495 0.93520 0.90117 1.92839 1.60487 1.93416 1.73151 1.22211 0.97197 0.94318 1.04114 1.21461 1.01173 0.96185 0.96028 1.21186 0.98831 0.93305 0.97241 0.89754 1.22280 0.87898 0.89976 1.00050 1.86414 1.36409 1.22942 1.94382 1.21469 0.97295 0.93459 1.02799 1.22153 1.03950 0.98271 0.93356 1.20118 0.96009 1.02572 0.94661 1.26362 1.03098 0.99262 1.05270 1.84047 1.23824 1.27743 1.18343 0.73594 0.86121 1.17275 1.20367 0.73669 0.89392 0.86446 0.90368 0.87371 0.92950 0.91307 0.92555 0.93815 0.75560 0.89677 0.92336 0.89875 0.87013 0.80528 0.77398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.31 9.45 -125.17 -1.18 -5.50 16 2 C -0.10 -0.35 2.39 71.24 0.17 -0.18 16 3 Si 0.76 -0.66 31.27 68.60 2.15 1.49 16 4 C -0.09 -0.41 5.77 24.59 0.14 -0.27 16 5 C -0.68 -3.44 5.71 21.22 0.12 -3.32 16 6 S 2.73 23.99 4.22 -56.49 -0.24 23.75 16 7 O -0.98 -13.35 17.15 -123.40 -2.12 -15.46 16 8 O -0.98 -15.48 16.17 -120.35 -1.95 -17.42 16 9 N -1.11 -1.59 5.44 -187.49 -1.02 -2.61 16 10 C 0.08 -0.21 4.90 86.38 0.42 0.22 16 11 C 0.12 -0.26 0.88 -10.79 -0.01 -0.27 16 12 F -0.22 -1.10 15.60 44.97 0.70 -0.40 16 13 C -0.14 0.61 4.87 30.60 0.15 0.76 16 14 C -0.11 0.12 4.98 30.59 0.15 0.27 16 15 C -0.09 0.24 2.43 -10.79 -0.03 0.22 16 16 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 17 C 0.08 -0.16 6.43 71.98 0.46 0.30 16 18 O -0.59 -0.03 13.20 -148.98 -1.97 -1.99 16 19 C -0.11 0.45 5.08 30.59 0.16 0.60 16 20 C -0.14 0.75 5.00 30.59 0.15 0.90 16 21 C -0.11 0.16 9.52 21.22 0.20 0.36 16 22 C -0.20 0.85 11.23 66.72 0.75 1.60 16 23 S 0.20 -0.38 20.88 -56.49 -1.18 -1.56 16 24 H 0.41 -0.36 8.86 -74.06 -0.66 -1.02 16 25 H 0.12 0.02 7.96 -2.39 -0.02 0.00 16 26 H -0.25 -0.28 7.11 99.48 0.71 0.43 16 27 H -0.28 -1.59 7.11 99.48 0.71 -0.88 16 28 H 0.43 -0.32 7.39 -96.75 -0.71 -1.04 16 29 H 0.09 -0.01 7.65 -2.39 -0.02 -0.03 16 30 H 0.12 -1.15 5.37 -2.39 -0.01 -1.16 16 31 H 0.08 -0.34 6.88 -2.39 -0.02 -0.36 16 32 H 0.11 -0.95 8.14 -2.39 -0.02 -0.97 16 33 H 0.05 0.11 7.80 -2.39 -0.02 0.09 16 34 H 0.07 0.05 7.82 -2.39 -0.02 0.04 16 35 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.04 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.39 -3.01 9.12 -74.06 -0.68 -3.69 16 38 H 0.08 -0.52 8.14 -2.38 -0.02 -0.54 16 39 H 0.06 -0.05 7.80 -2.39 -0.02 -0.06 16 40 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 41 H 0.11 -1.15 8.14 -2.39 -0.02 -1.17 16 42 H 0.18 -1.43 4.83 -2.91 -0.01 -1.45 16 43 H 0.21 -2.33 8.06 -2.91 -0.02 -2.35 16 Total: 0.00 -28.90 363.30 -4.89 -33.79 By element: Atomic # 1 Polarization: -14.35 SS G_CDS: -0.93 Total: -15.28 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 2.84 Total: 1.19 kcal Atomic # 7 Polarization: -1.59 SS G_CDS: -1.02 Total: -2.61 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -7.21 Total: -40.37 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.70 Total: -0.40 kcal Atomic # 14 Polarization: -0.66 SS G_CDS: 2.15 Total: 1.49 kcal Atomic # 16 Polarization: 23.61 SS G_CDS: -1.42 Total: 22.19 kcal Total: -28.90 -4.89 -33.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_14772022.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.201 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds