Wall clock time and date at job start Mon Mar 8 2021 12:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86305 * 109.47306 * 2 1 4 4 C 1.50702 * 109.47705 * 120.00063 * 2 1 3 5 5 C 1.33396 * 125.20028 * 64.99980 * 4 2 1 6 6 C 1.38421 * 114.91695 * 179.97438 * 5 4 2 7 7 S 1.76201 * 122.53596 * 179.97438 * 6 5 4 8 8 O 1.42097 * 106.40362 * 336.46193 * 7 6 5 9 9 O 1.42102 * 106.40269 * 203.54201 * 7 6 5 10 10 N 1.65599 * 107.21603 * 90.00142 * 7 6 5 11 11 C 1.46500 * 119.99902 * 65.00077 * 10 7 6 12 12 C 1.53006 * 109.47373 * 164.99976 * 11 10 7 13 13 F 1.39897 * 109.46939 * 60.00048 * 12 11 10 14 14 C 1.52999 * 109.47000 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47127 * 299.99539 * 15 14 12 17 17 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 18 18 C 1.52996 * 109.47131 * 179.97438 * 16 15 14 19 19 O 1.42902 * 109.47239 * 175.00077 * 18 16 15 20 20 C 1.53002 * 109.46817 * 60.00361 * 16 15 14 21 21 C 1.52996 * 109.46972 * 299.99733 * 20 16 15 22 22 C 1.33386 * 114.92402 * 0.24912 * 6 5 4 23 23 S 1.75882 * 125.20485 * 244.96251 * 4 2 1 24 24 H 0.96705 * 114.00062 * 299.99404 * 1 2 3 25 25 H 1.09000 * 109.47491 * 240.00278 * 2 1 3 26 26 H 1.48493 * 110.00301 * 178.68373 * 3 2 1 27 27 H 1.48506 * 109.99804 * 300.00644 * 3 2 1 28 28 H 1.07995 * 122.53949 * 359.97438 * 5 4 2 29 29 H 0.97004 * 120.00388 * 244.99935 * 10 7 6 30 30 H 1.09004 * 109.47042 * 44.99890 * 11 10 7 31 31 H 1.09000 * 109.47175 * 284.99849 * 11 10 7 32 32 H 1.08993 * 109.47839 * 60.00073 * 14 12 11 33 33 H 1.09000 * 109.47160 * 299.99635 * 14 12 11 34 34 H 1.09001 * 109.46801 * 59.99811 * 15 14 12 35 35 H 1.09001 * 109.46998 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47315 * 295.00431 * 18 16 15 37 37 H 1.09007 * 109.46739 * 55.00050 * 18 16 15 38 38 H 0.96703 * 113.99863 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.47407 * 60.00219 * 20 16 15 40 40 H 1.09000 * 109.46986 * 179.97438 * 20 16 15 41 41 H 1.09001 * 109.46993 * 180.02562 * 21 20 16 42 42 H 1.09000 * 109.47380 * 299.99696 * 21 20 16 43 43 H 1.08005 * 125.20447 * 179.74908 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7535 -2.0052 1.4973 6 6 2.3065 -2.4360 2.6909 7 16 2.1904 -4.1059 3.2410 8 8 1.0542 -4.6632 2.5947 9 8 2.3438 -4.0747 4.6533 10 7 3.5091 -4.9111 2.6451 11 6 4.8549 -4.5453 3.0935 12 6 5.8403 -5.6487 2.7028 13 9 5.8384 -5.8046 1.3125 14 6 7.2457 -5.2668 3.1717 15 6 8.2311 -6.3700 2.7803 16 6 7.8129 -7.6852 3.4407 17 1 7.8142 -7.5643 4.5240 18 6 8.7979 -8.7884 3.0488 19 8 8.4761 -9.9876 3.7563 20 6 6.4074 -8.0670 2.9718 21 6 5.4221 -6.9639 3.3631 22 6 2.9290 -1.4901 3.3957 23 16 2.8429 0.0406 2.5337 24 1 -0.3933 0.4416 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 3.5345 1.7703 0.0321 27 1 1.5613 2.4679 -1.2085 28 1 1.2185 -2.6672 0.8325 29 1 3.3905 -5.6250 1.9991 30 1 4.8565 -4.4237 4.1768 31 1 5.1529 -3.6086 2.6224 32 1 7.2470 -5.1456 4.2549 33 1 7.5439 -4.3301 2.7009 34 1 8.2297 -6.4907 1.6970 35 1 9.2325 -6.0978 3.1140 36 1 8.7317 -8.9704 1.9762 37 1 9.8114 -8.4775 3.3027 38 1 9.0614 -10.7311 3.5567 39 1 6.4061 -8.1878 1.8885 40 1 6.1097 -9.0042 3.4419 41 1 4.4208 -7.2361 3.0295 42 1 5.4233 -6.8431 4.4464 43 1 3.4137 -1.6414 4.3490 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17664726_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:35 Heat of formation + Delta-G solvation = -177.815928 kcal Electronic energy + Delta-G solvation = -29510.225030 eV Core-core repulsion = 25110.732818 eV Total energy + Delta-G solvation = -4399.492213 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.085 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -48.81746 -39.75499 -39.53645 -38.30240 -37.63691 -37.57484 -36.89182 -36.20761 -32.40134 -32.03361 -31.88561 -28.08389 -27.26610 -25.01979 -24.89256 -24.01399 -21.97534 -21.48225 -20.87987 -20.23112 -19.22651 -18.75911 -18.31358 -17.96562 -17.77538 -17.48066 -17.18091 -16.55928 -16.38596 -16.24095 -15.85639 -15.62943 -15.53914 -15.30290 -15.06468 -14.75581 -14.42072 -14.33428 -14.27247 -14.14371 -13.98209 -13.76970 -13.43243 -13.22368 -13.18993 -13.10278 -13.07198 -12.92487 -12.80018 -12.53382 -12.26616 -12.24517 -12.11067 -11.71211 -11.65163 -11.31248 -11.21464 -10.92362 -10.79683 -10.68518 -10.26485 -9.91975 -5.29570 -0.81005 -0.54242 0.25359 0.51841 0.94399 1.09056 1.45877 1.77506 1.94178 2.66697 3.02073 3.09686 3.20366 3.28300 3.36463 3.41743 3.48218 3.58782 3.74813 3.80639 3.86688 4.00102 4.12949 4.16176 4.19699 4.26463 4.29804 4.31272 4.42406 4.43465 4.50959 4.55146 4.61760 4.73347 4.80378 4.85400 4.85435 4.94542 5.00417 5.01447 5.13259 5.26782 5.37340 5.73282 6.37960 6.63329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.028 4.028 3 Si 0.657 3.343 4 C -0.229 4.229 5 C -0.042 4.042 6 C -0.686 4.686 7 S 2.711 3.289 8 O -0.947 6.947 9 O -0.950 6.950 10 N -1.113 6.113 11 C 0.096 3.904 12 C 0.119 3.881 13 F -0.200 7.200 14 C -0.137 4.137 15 C -0.114 4.114 16 C -0.090 4.090 17 H 0.081 0.919 18 C 0.079 3.921 19 O -0.573 6.573 20 C -0.113 4.113 21 C -0.141 4.141 22 C -0.088 4.088 23 S 0.159 5.841 24 H 0.382 0.618 25 H 0.126 0.874 26 H -0.238 1.238 27 H -0.231 1.231 28 H 0.157 0.843 29 H 0.423 0.577 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.381 0.619 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 2.896 1.115 6.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.141 4.141 3 Si 0.556 3.444 4 C -0.346 4.346 5 C -0.070 4.070 6 C -0.786 4.786 7 S 2.797 3.203 8 O -0.937 6.937 9 O -0.940 6.940 10 N -0.874 5.874 11 C -0.031 4.031 12 C 0.100 3.900 13 F -0.180 7.180 14 C -0.175 4.175 15 C -0.152 4.152 16 C -0.108 4.108 17 H 0.099 0.901 18 C 0.002 3.998 19 O -0.379 6.379 20 C -0.150 4.150 21 C -0.179 4.179 22 C -0.227 4.227 23 S 0.423 5.577 24 H 0.229 0.771 25 H 0.143 0.857 26 H -0.162 1.162 27 H -0.154 1.154 28 H 0.175 0.825 29 H 0.260 0.740 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.228 0.772 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.351 4.885 1.238 7.351 hybrid contribution 0.334 -1.968 -1.381 2.427 sum 5.685 2.917 -0.143 6.391 Atomic orbital electron populations 1.86551 1.16371 1.81684 1.49145 1.24467 0.85417 1.09205 0.95000 0.95070 0.81989 0.77344 0.89962 1.25081 1.08771 0.98339 1.02457 1.19616 0.97532 0.95204 0.94673 1.30034 1.15530 1.25971 1.07072 1.01590 0.72266 0.72762 0.73667 1.93628 1.46860 1.76645 1.76598 1.93611 1.85839 1.86565 1.28022 1.55474 1.19963 1.50614 1.61341 1.21953 0.81480 0.98066 1.01644 1.21078 0.96044 0.96127 0.76787 1.92866 1.97502 1.96766 1.30898 1.22074 0.92646 0.99833 1.02994 1.21485 0.98805 0.93369 1.01547 1.21193 0.94920 0.93340 1.01376 0.90096 1.22205 0.97239 0.85250 0.95156 1.86467 1.59698 1.22009 1.69718 1.21522 0.93361 0.98384 1.01756 1.22160 1.00456 0.93393 1.01904 1.25930 0.98549 0.95896 1.02285 1.84327 1.50507 1.10891 1.11943 0.77063 0.85679 1.16228 1.15390 0.82540 0.74026 0.88142 0.90371 0.89372 0.90060 0.90912 0.90840 0.93555 0.93572 0.77201 0.91403 0.90345 0.90315 0.89503 0.79658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.02 12.88 -35.23 -0.45 -0.48 16 2 C -0.03 0.02 2.96 36.01 0.11 0.12 16 3 Si 0.66 -1.04 30.98 -169.99 -5.27 -6.31 16 4 C -0.23 0.05 5.70 -36.00 -0.21 -0.16 16 5 C -0.04 -0.03 9.59 -41.21 -0.40 -0.43 16 6 C -0.69 -0.16 5.86 -41.21 -0.24 -0.40 16 7 S 2.71 2.90 5.80 -107.50 -0.62 2.28 16 8 O -0.95 -4.18 17.63 -57.17 -1.01 -5.19 16 9 O -0.95 -2.99 17.11 -57.17 -0.98 -3.97 16 10 N -1.11 1.37 5.43 -10.61 -0.06 1.31 16 11 C 0.10 -0.23 5.43 -4.04 -0.02 -0.25 16 12 C 0.12 -0.20 0.86 -90.62 -0.08 -0.28 16 13 F -0.20 -0.09 15.47 2.25 0.03 -0.06 16 14 C -0.14 0.39 5.00 -26.73 -0.13 0.26 16 15 C -0.11 0.25 5.08 -26.73 -0.14 0.11 16 16 C -0.09 0.10 2.43 -90.62 -0.22 -0.12 16 17 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 18 C 0.08 -0.08 6.43 37.16 0.24 0.15 16 19 O -0.57 -0.13 13.19 -35.23 -0.46 -0.59 16 20 C -0.11 0.05 4.98 -26.73 -0.13 -0.08 16 21 C -0.14 0.18 4.83 -26.73 -0.13 0.05 16 22 C -0.09 0.11 10.70 29.04 0.31 0.42 16 23 S 0.16 -0.26 20.60 -107.50 -2.21 -2.47 16 24 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 25 H 0.13 -0.09 7.96 -51.93 -0.41 -0.50 16 26 H -0.24 -0.07 7.11 56.52 0.40 0.34 16 27 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 28 H 0.16 0.14 7.96 -52.49 -0.42 -0.27 16 29 H 0.42 -0.77 7.83 -34.47 -0.27 -1.04 16 30 H 0.10 -0.36 7.75 -51.93 -0.40 -0.76 16 31 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 32 H 0.09 -0.35 8.14 -51.93 -0.42 -0.78 16 33 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 34 H 0.07 -0.10 7.80 -51.93 -0.41 -0.50 16 35 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 36 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 37 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.38 -1.41 9.12 45.56 0.42 -1.00 16 39 H 0.07 0.01 7.80 -51.93 -0.41 -0.39 16 40 H 0.08 0.05 7.82 -51.93 -0.41 -0.36 16 41 H 0.08 -0.10 7.20 -51.93 -0.37 -0.47 16 42 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 43 H 0.19 -0.66 8.00 -52.48 -0.42 -1.08 16 LS Contribution 376.22 15.07 5.67 5.67 Total: 0.00 -10.57 376.22 -11.68 -22.25 By element: Atomic # 1 Polarization: -6.54 SS G_CDS: -5.28 Total: -11.83 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.04 Total: -0.61 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -0.06 Total: 1.31 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -2.90 Total: -10.24 kcal Atomic # 9 Polarization: -0.09 SS G_CDS: 0.03 Total: -0.06 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: -5.27 Total: -6.31 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.84 Total: -0.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -10.57 -11.68 -22.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.567 kcal (2) G-P(sol) polarization free energy of solvation -10.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds