Wall clock time and date at job start Mon Mar 8 2021 12:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86305 * 109.47306 * 2 1 4 4 C 1.50702 * 109.47705 * 120.00063 * 2 1 3 5 5 C 1.33396 * 125.20028 * 64.99980 * 4 2 1 6 6 C 1.38421 * 114.91695 * 179.97438 * 5 4 2 7 7 S 1.76201 * 122.53596 * 179.97438 * 6 5 4 8 8 O 1.42097 * 106.40362 * 336.46193 * 7 6 5 9 9 O 1.42102 * 106.40269 * 203.54201 * 7 6 5 10 10 N 1.65599 * 107.21603 * 90.00142 * 7 6 5 11 11 C 1.46500 * 119.99902 * 65.00077 * 10 7 6 12 12 C 1.53006 * 109.47373 * 164.99976 * 11 10 7 13 13 F 1.39897 * 109.46939 * 60.00048 * 12 11 10 14 14 C 1.52999 * 109.47000 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47127 * 299.99539 * 15 14 12 17 17 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 18 18 C 1.52996 * 109.47131 * 179.97438 * 16 15 14 19 19 O 1.42902 * 109.47239 * 175.00077 * 18 16 15 20 20 C 1.53002 * 109.46817 * 60.00361 * 16 15 14 21 21 C 1.52996 * 109.46972 * 299.99733 * 20 16 15 22 22 C 1.33386 * 114.92402 * 0.24912 * 6 5 4 23 23 S 1.75882 * 125.20485 * 244.96251 * 4 2 1 24 24 H 0.96705 * 114.00062 * 299.99404 * 1 2 3 25 25 H 1.09000 * 109.47491 * 240.00278 * 2 1 3 26 26 H 1.48493 * 110.00301 * 178.68373 * 3 2 1 27 27 H 1.48506 * 109.99804 * 300.00644 * 3 2 1 28 28 H 1.07995 * 122.53949 * 359.97438 * 5 4 2 29 29 H 0.97004 * 120.00388 * 244.99935 * 10 7 6 30 30 H 1.09004 * 109.47042 * 44.99890 * 11 10 7 31 31 H 1.09000 * 109.47175 * 284.99849 * 11 10 7 32 32 H 1.08993 * 109.47839 * 60.00073 * 14 12 11 33 33 H 1.09000 * 109.47160 * 299.99635 * 14 12 11 34 34 H 1.09001 * 109.46801 * 59.99811 * 15 14 12 35 35 H 1.09001 * 109.46998 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.47315 * 295.00431 * 18 16 15 37 37 H 1.09007 * 109.46739 * 55.00050 * 18 16 15 38 38 H 0.96703 * 113.99863 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.47407 * 60.00219 * 20 16 15 40 40 H 1.09000 * 109.46986 * 179.97438 * 20 16 15 41 41 H 1.09001 * 109.46993 * 180.02562 * 21 20 16 42 42 H 1.09000 * 109.47380 * 299.99696 * 21 20 16 43 43 H 1.08005 * 125.20447 * 179.74908 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7535 -2.0052 1.4973 6 6 2.3065 -2.4360 2.6909 7 16 2.1904 -4.1059 3.2410 8 8 1.0542 -4.6632 2.5947 9 8 2.3438 -4.0747 4.6533 10 7 3.5091 -4.9111 2.6451 11 6 4.8549 -4.5453 3.0935 12 6 5.8403 -5.6487 2.7028 13 9 5.8384 -5.8046 1.3125 14 6 7.2457 -5.2668 3.1717 15 6 8.2311 -6.3700 2.7803 16 6 7.8129 -7.6852 3.4407 17 1 7.8142 -7.5643 4.5240 18 6 8.7979 -8.7884 3.0488 19 8 8.4761 -9.9876 3.7563 20 6 6.4074 -8.0670 2.9718 21 6 5.4221 -6.9639 3.3631 22 6 2.9290 -1.4901 3.3957 23 16 2.8429 0.0406 2.5337 24 1 -0.3933 0.4416 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 3.5345 1.7703 0.0321 27 1 1.5613 2.4679 -1.2085 28 1 1.2185 -2.6672 0.8325 29 1 3.3905 -5.6250 1.9991 30 1 4.8565 -4.4237 4.1768 31 1 5.1529 -3.6086 2.6224 32 1 7.2470 -5.1456 4.2549 33 1 7.5439 -4.3301 2.7009 34 1 8.2297 -6.4907 1.6970 35 1 9.2325 -6.0978 3.1140 36 1 8.7317 -8.9704 1.9762 37 1 9.8114 -8.4775 3.3027 38 1 9.0614 -10.7311 3.5567 39 1 6.4061 -8.1878 1.8885 40 1 6.1097 -9.0042 3.4419 41 1 4.4208 -7.2361 3.0295 42 1 5.4233 -6.8431 4.4464 43 1 3.4137 -1.6414 4.3490 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664726_15065232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:34 Heat of formation + Delta-G solvation = -183.001295 kcal Electronic energy + Delta-G solvation = -29510.449885 eV Core-core repulsion = 25110.732818 eV Total energy + Delta-G solvation = -4399.717067 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.085 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.75544 -39.63947 -39.49400 -38.47006 -37.58190 -37.51230 -37.07552 -36.11648 -32.28667 -31.91186 -31.82883 -27.95712 -27.21310 -24.96714 -24.80084 -23.86285 -21.85223 -21.47226 -20.77516 -20.21181 -19.16175 -18.79719 -18.24929 -17.94276 -17.74358 -17.44201 -17.08819 -16.45981 -16.34324 -16.23930 -15.78518 -15.54334 -15.49230 -15.23767 -14.99460 -14.66999 -14.32173 -14.25965 -14.19788 -14.07707 -13.95966 -13.71167 -13.44585 -13.38286 -13.26649 -13.13514 -12.97896 -12.94412 -12.68518 -12.55674 -12.22063 -12.12896 -12.00382 -11.68917 -11.55620 -11.18723 -11.09879 -10.82768 -10.70868 -10.59740 -10.20362 -9.83186 -5.19252 -0.83882 -0.48939 0.33753 0.57966 0.94191 1.16896 1.53342 1.83867 1.96828 2.61863 3.12570 3.21684 3.32332 3.40723 3.46484 3.57918 3.62899 3.66492 3.89547 3.93012 4.01899 4.15872 4.21627 4.30938 4.33865 4.35855 4.42137 4.46000 4.57675 4.59209 4.63981 4.64292 4.74280 4.86902 4.89698 4.96313 5.01546 5.04286 5.05124 5.13480 5.26862 5.34022 5.47442 5.82831 6.62208 6.86790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.037 4.037 3 Si 0.736 3.264 4 C -0.237 4.237 5 C -0.059 4.059 6 C -0.695 4.695 7 S 2.729 3.271 8 O -0.988 6.988 9 O -0.973 6.973 10 N -1.108 6.108 11 C 0.088 3.912 12 C 0.118 3.882 13 F -0.214 7.214 14 C -0.137 4.137 15 C -0.112 4.112 16 C -0.089 4.089 17 H 0.078 0.922 18 C 0.076 3.924 19 O -0.595 6.595 20 C -0.110 4.110 21 C -0.144 4.144 22 C -0.085 4.085 23 S 0.201 5.799 24 H 0.397 0.603 25 H 0.120 0.880 26 H -0.258 1.258 27 H -0.271 1.271 28 H 0.145 0.855 29 H 0.425 0.575 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.395 0.605 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.578 4.344 2.087 8.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.149 4.149 3 Si 0.638 3.362 4 C -0.355 4.355 5 C -0.088 4.088 6 C -0.797 4.797 7 S 2.818 3.182 8 O -0.978 6.978 9 O -0.963 6.963 10 N -0.871 5.871 11 C -0.038 4.038 12 C 0.099 3.901 13 F -0.195 7.195 14 C -0.175 4.175 15 C -0.149 4.149 16 C -0.108 4.108 17 H 0.097 0.903 18 C -0.002 4.002 19 O -0.403 6.403 20 C -0.148 4.148 21 C -0.182 4.182 22 C -0.224 4.224 23 S 0.465 5.535 24 H 0.247 0.753 25 H 0.138 0.862 26 H -0.183 1.183 27 H -0.197 1.197 28 H 0.163 0.837 29 H 0.262 0.738 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.245 0.755 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.562 6.291 2.232 9.360 hybrid contribution -0.013 -2.412 -1.726 2.966 sum 6.549 3.879 0.507 7.628 Atomic orbital electron populations 1.86511 1.16826 1.82185 1.50349 1.24672 0.85265 1.10169 0.94838 0.94162 0.79437 0.74675 0.87914 1.25198 1.08929 0.98268 1.03127 1.19643 0.98333 0.95713 0.95129 1.29757 1.17010 1.25491 1.07419 1.00725 0.71818 0.72826 0.72874 1.93570 1.49243 1.77833 1.77201 1.93574 1.86196 1.87078 1.29407 1.55271 1.20034 1.50433 1.61313 1.22202 0.80298 0.98490 1.02828 1.21197 0.97133 0.95938 0.75869 1.92839 1.97618 1.96844 1.32206 1.22127 0.91343 0.99909 1.04119 1.21466 0.99685 0.92991 1.00790 1.21204 0.94335 0.94018 1.01229 0.90339 1.22293 0.97823 0.84978 0.95078 1.86428 1.60723 1.23020 1.70165 1.21458 0.94358 0.98108 1.00857 1.22189 0.99950 0.93588 1.02468 1.26318 0.97497 0.95761 1.02860 1.84183 1.49146 1.09797 1.10416 0.75299 0.86241 1.18294 1.19667 0.83695 0.73765 0.86633 0.88605 0.87744 0.88906 0.91926 0.89641 0.93567 0.92446 0.75545 0.92496 0.91893 0.90828 0.88688 0.77227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.27 12.88 -148.98 -1.92 -2.19 16 2 C -0.04 0.04 2.96 71.24 0.21 0.25 16 3 Si 0.74 -2.58 30.98 68.60 2.13 -0.46 16 4 C -0.24 0.14 5.70 24.59 0.14 0.28 16 5 C -0.06 -0.13 9.59 21.22 0.20 0.07 16 6 C -0.70 -0.28 5.86 21.21 0.12 -0.15 16 7 S 2.73 7.74 5.80 -56.49 -0.33 7.41 16 8 O -0.99 -10.55 17.63 -128.00 -2.26 -12.80 16 9 O -0.97 -6.21 17.11 -128.00 -2.19 -8.40 16 10 N -1.11 2.30 5.43 -187.47 -1.02 1.29 16 11 C 0.09 -0.50 5.43 86.38 0.47 -0.03 16 12 C 0.12 -0.45 0.86 -10.79 -0.01 -0.46 16 13 F -0.21 -0.27 15.47 44.97 0.70 0.42 16 14 C -0.14 0.96 5.00 30.60 0.15 1.11 16 15 C -0.11 0.55 5.08 30.60 0.16 0.71 16 16 C -0.09 0.19 2.43 -10.79 -0.03 0.16 16 17 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 18 C 0.08 -0.14 6.43 71.98 0.46 0.32 16 19 O -0.60 -0.60 13.19 -148.98 -1.97 -2.57 16 20 C -0.11 -0.02 4.98 30.59 0.15 0.13 16 21 C -0.14 0.30 4.83 30.59 0.15 0.45 16 22 C -0.09 0.33 10.70 66.72 0.71 1.05 16 23 S 0.20 -0.96 20.60 -56.49 -1.16 -2.13 16 24 H 0.40 -3.00 8.70 -74.05 -0.64 -3.65 16 25 H 0.12 -0.06 7.96 -2.39 -0.02 -0.08 16 26 H -0.26 0.08 7.11 99.48 0.71 0.79 16 27 H -0.27 -0.83 7.11 99.48 0.71 -0.13 16 28 H 0.15 0.56 7.96 -2.91 -0.02 0.54 16 29 H 0.43 -1.07 7.83 -96.74 -0.76 -1.83 16 30 H 0.12 -1.00 7.75 -2.38 -0.02 -1.02 16 31 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H 0.06 -0.17 7.80 -2.39 -0.02 -0.18 16 35 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 38 H 0.40 -2.74 9.12 -74.06 -0.68 -3.42 16 39 H 0.06 0.12 7.80 -2.39 -0.02 0.10 16 40 H 0.06 0.19 7.82 -2.39 -0.02 0.17 16 41 H 0.07 -0.10 7.20 -2.39 -0.02 -0.11 16 42 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.21 -1.98 8.00 -2.91 -0.02 -2.00 16 Total: 0.00 -24.59 376.22 -6.10 -30.69 By element: Atomic # 1 Polarization: -14.18 SS G_CDS: -0.98 Total: -15.15 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 2.90 Total: 3.89 kcal Atomic # 7 Polarization: 2.30 SS G_CDS: -1.02 Total: 1.29 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -8.33 Total: -25.96 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 0.70 Total: 0.42 kcal Atomic # 14 Polarization: -2.58 SS G_CDS: 2.13 Total: -0.46 kcal Atomic # 16 Polarization: 6.78 SS G_CDS: -1.49 Total: 5.29 kcal Total: -24.59 -6.10 -30.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_15065232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.316 kcal (2) G-P(sol) polarization free energy of solvation -24.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds