Wall clock time and date at job start Mon Mar 8 2021 12:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33382 * 125.20442 * 2 1 4 4 C 1.50701 * 122.54110 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47052 * 292.84183 * 4 3 2 6 6 Si 1.86297 * 109.47153 * 52.84550 * 4 3 2 7 7 C 1.38428 * 114.92107 * 180.28882 * 3 2 1 8 8 S 1.76199 * 122.54172 * 179.72494 * 7 3 2 9 9 O 1.42100 * 106.40482 * 193.12946 * 8 7 3 10 10 O 1.42095 * 106.40261 * 326.05673 * 8 7 3 11 11 N 1.65606 * 107.21653 * 79.59317 * 8 7 3 12 12 C 1.46496 * 120.00212 * 64.99699 * 11 8 7 13 13 C 1.53001 * 109.47375 * 165.00360 * 12 11 8 14 14 F 1.39901 * 109.46855 * 305.00339 * 13 12 11 15 15 C 1.53001 * 109.47169 * 65.00000 * 13 12 11 16 16 C 1.53001 * 109.47169 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47217 * 300.00227 * 16 15 13 18 18 H 1.09001 * 109.47007 * 300.00163 * 17 16 15 19 19 C 1.53000 * 109.47001 * 179.97438 * 17 16 15 20 20 O 1.42897 * 109.46891 * 65.00240 * 19 17 16 21 21 C 1.53001 * 109.47237 * 59.99814 * 17 16 15 22 22 C 1.52999 * 109.47217 * 185.00228 * 13 12 11 23 23 C 1.33392 * 114.92026 * 359.49543 * 7 3 2 24 24 C 1.50696 * 125.20574 * 180.21053 * 23 7 3 25 25 S 1.75882 * 109.59038 * 0.47322 * 23 7 3 26 26 H 1.09000 * 109.47158 * 84.62286 * 1 2 3 27 27 H 1.09000 * 109.47692 * 204.62904 * 1 2 3 28 28 H 1.09002 * 109.46999 * 324.62824 * 1 2 3 29 29 H 1.09000 * 109.46931 * 172.84185 * 4 3 2 30 30 H 0.96698 * 114.00163 * 304.32778 * 5 4 3 31 31 H 1.48497 * 110.00314 * 55.03774 * 6 4 3 32 32 H 1.48501 * 110.00199 * 176.36514 * 6 4 3 33 33 H 0.97005 * 119.99816 * 245.00386 * 11 8 7 34 34 H 1.09001 * 109.47525 * 285.00427 * 12 11 8 35 35 H 1.08998 * 109.46890 * 44.99994 * 12 11 8 36 36 H 1.08997 * 109.47175 * 300.00598 * 15 13 12 37 37 H 1.09001 * 109.46838 * 59.99970 * 15 13 12 38 38 H 1.08994 * 109.47198 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.46362 * 60.00303 * 16 15 13 40 40 H 1.08998 * 109.46875 * 185.00040 * 19 17 16 41 41 H 1.09000 * 109.47303 * 305.00018 * 19 17 16 42 42 H 0.96698 * 114.00273 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47544 * 179.97438 * 21 17 16 44 44 H 1.09003 * 109.47232 * 59.99380 * 21 17 16 45 45 H 1.09001 * 109.47007 * 300.00163 * 22 13 12 46 46 H 1.08999 * 109.47011 * 59.99900 * 22 13 12 47 47 H 1.08997 * 109.47047 * 180.33425 * 24 23 7 48 48 H 1.09000 * 109.46848 * 300.32805 * 24 23 7 49 49 H 1.09000 * 109.47564 * 60.32857 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4846 0.0006 5 8 1.0403 2.7277 -1.2407 6 14 0.4887 2.6572 1.4009 7 6 3.6379 0.8428 -0.0063 8 16 4.8356 2.1351 -0.0146 9 8 6.0805 1.5265 -0.3294 10 8 4.2752 3.1967 -0.7749 11 7 4.9670 2.6916 1.5396 12 6 5.4871 1.8136 2.5906 13 6 5.8566 2.6499 3.8174 14 9 6.7489 3.6598 3.4417 15 6 4.5920 3.2795 4.4050 16 6 4.9615 4.1163 5.6315 17 6 5.6199 3.2192 6.6815 18 1 4.9248 2.4324 6.9745 19 6 5.9900 4.0562 7.9076 20 8 4.7992 4.5493 8.5248 21 6 6.8845 2.5896 6.0938 22 6 6.5146 1.7523 4.8672 23 6 3.9750 -0.4479 -0.0008 24 6 5.3860 -0.9773 -0.0013 25 16 2.5209 -1.4372 -0.0005 26 1 -0.3633 0.0963 -1.0231 27 1 -0.3634 -0.9341 0.4283 28 1 -0.3633 0.8380 0.5949 29 1 2.5113 3.2070 0.1285 30 1 1.5976 2.5902 -2.0189 31 1 1.1374 2.2906 2.6854 32 1 -0.0156 4.0525 1.4666 33 1 4.6994 3.5991 1.7540 34 1 4.7252 1.0838 2.8644 35 1 6.3728 1.2942 2.2247 36 1 4.1232 3.9189 3.6571 37 1 3.8967 2.4927 4.6976 38 1 4.0607 4.5652 6.0499 39 1 5.6566 4.9031 5.3383 40 1 6.5379 3.4372 8.6181 41 1 6.6140 4.8953 7.5999 42 1 4.9582 5.0895 9.3108 43 1 7.3538 1.9508 6.8420 44 1 7.5796 3.3764 5.8007 45 1 5.8193 0.9655 5.1598 46 1 7.4155 1.3038 4.4485 47 1 5.3651 -2.0670 -0.0020 48 1 5.9065 -0.6233 -0.8911 49 1 5.9068 -0.6243 0.8888 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17664726_15065288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:39 Heat of formation + Delta-G solvation = -182.395697 kcal Electronic energy + Delta-G solvation = -35361.637554 eV Core-core repulsion = 30650.871510 eV Total energy + Delta-G solvation = -4710.766044 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.116 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -48.79506 -40.29634 -39.78697 -38.55468 -37.66289 -36.97303 -36.94193 -36.25273 -34.34772 -32.44441 -32.08587 -30.92931 -28.11861 -28.01562 -25.97798 -24.98956 -24.08122 -23.28797 -21.99114 -20.95272 -20.76603 -20.02200 -19.00792 -18.80629 -18.34449 -18.13461 -17.61754 -17.42122 -16.92519 -16.53509 -16.26446 -16.23937 -15.86614 -15.70246 -15.45792 -15.19812 -15.13269 -14.97352 -14.78415 -14.43660 -14.41523 -14.30594 -14.25563 -13.99729 -13.87481 -13.62415 -13.45942 -13.38733 -13.26670 -13.18163 -13.13130 -13.00526 -12.79878 -12.72550 -12.58452 -12.27859 -12.17420 -12.13366 -11.77110 -11.68538 -11.34567 -11.32322 -11.23784 -10.95489 -10.93070 -10.80354 -10.05923 -9.57990 -4.83748 -0.83098 -0.49108 0.31641 0.63317 0.81969 1.37713 1.62066 1.87990 2.00084 2.60687 2.98346 3.08661 3.21710 3.25433 3.37870 3.42067 3.45705 3.64246 3.77206 3.82914 3.85949 3.93431 3.99489 4.06884 4.10029 4.13343 4.15757 4.21298 4.26036 4.35709 4.39155 4.40704 4.43771 4.45068 4.48126 4.52950 4.61910 4.70107 4.78262 4.79730 4.80505 4.86850 4.92278 4.97191 5.01180 5.08400 5.15813 5.22069 5.33195 5.67320 6.60807 6.61706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.172 4.172 3 C -0.078 4.078 4 C -0.077 4.077 5 O -0.527 6.527 6 Si 0.706 3.294 7 C -0.688 4.688 8 S 2.706 3.294 9 O -0.947 6.947 10 O -0.948 6.948 11 N -1.114 6.114 12 C 0.096 3.904 13 C 0.120 3.880 14 F -0.196 7.196 15 C -0.142 4.142 16 C -0.112 4.112 17 C -0.089 4.089 18 H 0.080 0.920 19 C 0.079 3.921 20 O -0.574 6.574 21 C -0.115 4.115 22 C -0.137 4.137 23 C -0.052 4.052 24 C -0.111 4.111 25 S 0.165 5.835 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.370 0.630 31 H -0.243 1.243 32 H -0.244 1.244 33 H 0.421 0.579 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.381 0.619 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.110 0.890 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -5.093 4.870 7.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.290 4.290 3 C -0.089 4.089 4 C -0.188 4.188 5 O -0.332 6.332 6 Si 0.603 3.397 7 C -0.788 4.788 8 S 2.794 3.206 9 O -0.937 6.937 10 O -0.939 6.939 11 N -0.875 5.875 12 C -0.031 4.031 13 C 0.100 3.900 14 F -0.177 7.177 15 C -0.180 4.180 16 C -0.150 4.150 17 C -0.108 4.108 18 H 0.098 0.902 19 C 0.001 3.999 20 O -0.379 6.379 21 C -0.152 4.152 22 C -0.176 4.176 23 C -0.174 4.174 24 C -0.170 4.170 25 S 0.431 5.569 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.218 0.782 31 H -0.167 1.167 32 H -0.168 1.168 33 H 0.257 0.743 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.228 0.772 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.128 0.872 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.745 -6.354 4.734 8.113 hybrid contribution 1.595 1.966 -0.019 2.532 sum -0.149 -4.388 4.715 6.442 Atomic orbital electron populations 1.20472 0.86784 1.01977 1.03846 1.24426 1.00528 0.94890 1.09139 1.18587 0.90190 0.97183 1.02908 1.25485 1.05033 0.91354 0.96882 1.86668 1.40655 1.91691 1.14200 0.92973 0.87787 0.85395 0.73552 1.29529 1.11987 1.13319 1.23955 1.01633 0.73626 0.73244 0.72119 1.93596 1.40305 1.77856 1.81934 1.93593 1.79192 1.53673 1.67395 1.55482 1.80755 1.24076 1.27232 1.21974 1.00460 0.92740 0.87918 1.21063 0.89116 0.86378 0.93444 1.92881 1.69959 1.62270 1.92573 1.22179 0.96105 1.01000 0.98737 1.21514 1.01788 0.97854 0.93828 1.21187 0.97605 0.97947 0.94021 0.90180 1.22203 0.86762 0.96804 0.94083 1.86460 1.32226 1.72345 1.46900 1.21500 0.97285 0.99755 0.96693 1.22091 1.02088 0.98164 0.95211 1.24634 1.00882 0.94992 0.96856 1.20937 0.88132 1.01842 1.06041 1.84434 0.94959 1.08298 1.69182 0.88787 0.90132 0.89778 0.89761 0.78209 1.16677 1.16822 0.74331 0.89816 0.88657 0.90733 0.89690 0.90380 0.91246 0.93503 0.93493 0.77176 0.90747 0.90785 0.89516 0.89799 0.90195 0.87219 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.17 9.59 36.00 0.35 0.52 16 2 C -0.17 0.01 6.10 -36.01 -0.22 -0.21 16 3 C -0.08 -0.10 4.47 -106.25 -0.48 -0.58 16 4 C -0.08 -0.16 2.25 36.01 0.08 -0.08 16 5 O -0.53 -1.26 12.55 -35.23 -0.44 -1.70 16 6 Si 0.71 0.56 28.73 -169.99 -4.88 -4.32 16 7 C -0.69 -0.85 5.85 -41.21 -0.24 -1.10 16 8 S 2.71 5.89 5.28 -107.50 -0.57 5.33 16 9 O -0.95 -3.48 14.19 -57.17 -0.81 -4.29 16 10 O -0.95 -4.53 15.25 -57.17 -0.87 -5.40 16 11 N -1.11 -0.02 5.72 -10.61 -0.06 -0.08 16 12 C 0.10 -0.15 5.39 -4.04 -0.02 -0.17 16 13 C 0.12 -0.13 0.87 -90.62 -0.08 -0.21 16 14 F -0.20 -0.30 15.59 2.25 0.04 -0.27 16 15 C -0.14 0.16 4.87 -26.73 -0.13 0.03 16 16 C -0.11 0.03 4.98 -26.73 -0.13 -0.10 16 17 C -0.09 0.09 2.43 -90.62 -0.22 -0.13 16 18 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 19 C 0.08 -0.08 6.43 37.16 0.24 0.16 16 20 O -0.57 -0.10 13.20 -35.23 -0.46 -0.57 16 21 C -0.11 0.23 5.08 -26.70 -0.14 0.09 16 22 C -0.14 0.34 5.00 -26.70 -0.13 0.21 16 23 C -0.05 -0.01 6.50 -36.00 -0.23 -0.24 16 24 C -0.11 0.13 8.64 36.00 0.31 0.44 16 25 S 0.16 -0.14 23.31 -107.50 -2.51 -2.65 16 26 H 0.09 -0.25 8.14 -51.93 -0.42 -0.68 16 27 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 28 H 0.09 -0.24 3.30 -51.93 -0.17 -0.42 16 29 H 0.09 0.23 4.90 -51.93 -0.25 -0.02 16 30 H 0.37 0.30 9.03 45.56 0.41 0.71 16 31 H -0.24 -0.31 7.11 56.52 0.40 0.09 16 32 H -0.24 -0.83 7.11 56.52 0.40 -0.43 16 33 H 0.42 -0.31 7.40 -34.48 -0.26 -0.56 16 34 H 0.08 -0.29 8.14 -51.93 -0.42 -0.72 16 35 H 0.10 -0.19 7.69 -51.93 -0.40 -0.59 16 36 H 0.07 -0.08 6.90 -51.93 -0.36 -0.44 16 37 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 38 H 0.08 0.06 7.82 -51.93 -0.41 -0.35 16 39 H 0.07 0.03 7.80 -51.93 -0.41 -0.37 16 40 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 41 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 42 H 0.38 -1.42 9.12 45.56 0.42 -1.01 16 43 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 44 H 0.07 -0.08 7.80 -51.93 -0.41 -0.48 16 45 H 0.09 -0.33 8.14 -51.93 -0.42 -0.76 16 46 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 47 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 48 H 0.11 -0.01 7.02 -51.93 -0.36 -0.38 16 49 H 0.09 -0.21 7.81 -51.93 -0.41 -0.62 16 LS Contribution 402.62 15.07 6.07 6.07 Total: 0.00 -9.02 402.62 -12.00 -21.02 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: -6.45 Total: -11.79 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.05 Total: -1.36 kcal Atomic # 7 Polarization: -0.02 SS G_CDS: -0.06 Total: -0.08 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -2.59 Total: -11.96 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: 0.56 SS G_CDS: -4.88 Total: -4.32 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -3.07 Total: 2.68 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -9.02 -12.00 -21.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_15065288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.376 kcal (2) G-P(sol) polarization free energy of solvation -9.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds