Wall clock time and date at job start Mon Mar 8 2021 12:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33382 * 125.20442 * 2 1 4 4 C 1.50701 * 122.54110 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47052 * 292.84183 * 4 3 2 6 6 Si 1.86297 * 109.47153 * 52.84550 * 4 3 2 7 7 C 1.38428 * 114.92107 * 180.28882 * 3 2 1 8 8 S 1.76199 * 122.54172 * 179.72494 * 7 3 2 9 9 O 1.42100 * 106.40482 * 193.12946 * 8 7 3 10 10 O 1.42095 * 106.40261 * 326.05673 * 8 7 3 11 11 N 1.65606 * 107.21653 * 79.59317 * 8 7 3 12 12 C 1.46496 * 120.00212 * 64.99699 * 11 8 7 13 13 C 1.53001 * 109.47375 * 165.00360 * 12 11 8 14 14 F 1.39901 * 109.46855 * 305.00339 * 13 12 11 15 15 C 1.53001 * 109.47169 * 65.00000 * 13 12 11 16 16 C 1.53001 * 109.47169 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47217 * 300.00227 * 16 15 13 18 18 H 1.09001 * 109.47007 * 300.00163 * 17 16 15 19 19 C 1.53000 * 109.47001 * 179.97438 * 17 16 15 20 20 O 1.42897 * 109.46891 * 65.00240 * 19 17 16 21 21 C 1.53001 * 109.47237 * 59.99814 * 17 16 15 22 22 C 1.52999 * 109.47217 * 185.00228 * 13 12 11 23 23 C 1.33392 * 114.92026 * 359.49543 * 7 3 2 24 24 C 1.50696 * 125.20574 * 180.21053 * 23 7 3 25 25 S 1.75882 * 109.59038 * 0.47322 * 23 7 3 26 26 H 1.09000 * 109.47158 * 84.62286 * 1 2 3 27 27 H 1.09000 * 109.47692 * 204.62904 * 1 2 3 28 28 H 1.09002 * 109.46999 * 324.62824 * 1 2 3 29 29 H 1.09000 * 109.46931 * 172.84185 * 4 3 2 30 30 H 0.96698 * 114.00163 * 304.32778 * 5 4 3 31 31 H 1.48497 * 110.00314 * 55.03774 * 6 4 3 32 32 H 1.48501 * 110.00199 * 176.36514 * 6 4 3 33 33 H 0.97005 * 119.99816 * 245.00386 * 11 8 7 34 34 H 1.09001 * 109.47525 * 285.00427 * 12 11 8 35 35 H 1.08998 * 109.46890 * 44.99994 * 12 11 8 36 36 H 1.08997 * 109.47175 * 300.00598 * 15 13 12 37 37 H 1.09001 * 109.46838 * 59.99970 * 15 13 12 38 38 H 1.08994 * 109.47198 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.46362 * 60.00303 * 16 15 13 40 40 H 1.08998 * 109.46875 * 185.00040 * 19 17 16 41 41 H 1.09000 * 109.47303 * 305.00018 * 19 17 16 42 42 H 0.96698 * 114.00273 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47544 * 179.97438 * 21 17 16 44 44 H 1.09003 * 109.47232 * 59.99380 * 21 17 16 45 45 H 1.09001 * 109.47007 * 300.00163 * 22 13 12 46 46 H 1.08999 * 109.47011 * 59.99900 * 22 13 12 47 47 H 1.08997 * 109.47047 * 180.33425 * 24 23 7 48 48 H 1.09000 * 109.46848 * 300.32805 * 24 23 7 49 49 H 1.09000 * 109.47564 * 60.32857 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4846 0.0006 5 8 1.0403 2.7277 -1.2407 6 14 0.4887 2.6572 1.4009 7 6 3.6379 0.8428 -0.0063 8 16 4.8356 2.1351 -0.0146 9 8 6.0805 1.5265 -0.3294 10 8 4.2752 3.1967 -0.7749 11 7 4.9670 2.6916 1.5396 12 6 5.4871 1.8136 2.5906 13 6 5.8566 2.6499 3.8174 14 9 6.7489 3.6598 3.4417 15 6 4.5920 3.2795 4.4050 16 6 4.9615 4.1163 5.6315 17 6 5.6199 3.2192 6.6815 18 1 4.9248 2.4324 6.9745 19 6 5.9900 4.0562 7.9076 20 8 4.7992 4.5493 8.5248 21 6 6.8845 2.5896 6.0938 22 6 6.5146 1.7523 4.8672 23 6 3.9750 -0.4479 -0.0008 24 6 5.3860 -0.9773 -0.0013 25 16 2.5209 -1.4372 -0.0005 26 1 -0.3633 0.0963 -1.0231 27 1 -0.3634 -0.9341 0.4283 28 1 -0.3633 0.8380 0.5949 29 1 2.5113 3.2070 0.1285 30 1 1.5976 2.5902 -2.0189 31 1 1.1374 2.2906 2.6854 32 1 -0.0156 4.0525 1.4666 33 1 4.6994 3.5991 1.7540 34 1 4.7252 1.0838 2.8644 35 1 6.3728 1.2942 2.2247 36 1 4.1232 3.9189 3.6571 37 1 3.8967 2.4927 4.6976 38 1 4.0607 4.5652 6.0499 39 1 5.6566 4.9031 5.3383 40 1 6.5379 3.4372 8.6181 41 1 6.6140 4.8953 7.5999 42 1 4.9582 5.0895 9.3108 43 1 7.3538 1.9508 6.8420 44 1 7.5796 3.3764 5.8007 45 1 5.8193 0.9655 5.1598 46 1 7.4155 1.3038 4.4485 47 1 5.3651 -2.0670 -0.0020 48 1 5.9065 -0.6233 -0.8911 49 1 5.9068 -0.6243 0.8888 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664726_15065288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:38 Heat of formation + Delta-G solvation = -185.036420 kcal Electronic energy + Delta-G solvation = -35361.752065 eV Core-core repulsion = 30650.871510 eV Total energy + Delta-G solvation = -4710.880555 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.116 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -48.80435 -40.31127 -39.69269 -38.74838 -37.60251 -37.19401 -37.06247 -36.20571 -34.27971 -32.36643 -31.97368 -30.81635 -28.07506 -28.00414 -25.92564 -24.90710 -23.95391 -23.29835 -21.89747 -20.96268 -20.72541 -20.05520 -19.07618 -18.84912 -18.28799 -18.19713 -17.60952 -17.37236 -16.99608 -16.48618 -16.30085 -16.28864 -15.83582 -15.64434 -15.47850 -15.16605 -15.14423 -14.90259 -14.76554 -14.31747 -14.30972 -14.20322 -14.18427 -14.08095 -13.85851 -13.57292 -13.50226 -13.42063 -13.38231 -13.19111 -13.05894 -13.00548 -12.71550 -12.71040 -12.54942 -12.32055 -12.15991 -12.07229 -11.78504 -11.59843 -11.38691 -11.24783 -11.14727 -11.07387 -10.86951 -10.74000 -10.00166 -9.54452 -4.91579 -0.92842 -0.47726 0.37124 0.65256 0.79239 1.27446 1.53044 1.83361 1.90455 2.49036 3.03830 3.17217 3.26086 3.36543 3.45062 3.50754 3.57899 3.65717 3.78301 3.87770 3.95326 4.00533 4.10186 4.15205 4.19686 4.22003 4.25300 4.34878 4.39802 4.47579 4.50232 4.53605 4.57764 4.59002 4.65628 4.68448 4.72056 4.81069 4.89522 4.91247 4.95165 4.99871 5.03474 5.07750 5.12345 5.20326 5.24922 5.28351 5.42357 5.69282 6.51843 6.84514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.174 4.174 3 C -0.095 4.095 4 C -0.092 4.092 5 O -0.536 6.536 6 Si 0.764 3.236 7 C -0.695 4.695 8 S 2.713 3.287 9 O -0.967 6.967 10 O -0.983 6.983 11 N -1.113 6.113 12 C 0.088 3.912 13 C 0.117 3.883 14 F -0.215 7.215 15 C -0.144 4.144 16 C -0.110 4.110 17 C -0.088 4.088 18 H 0.080 0.920 19 C 0.076 3.924 20 O -0.594 6.594 21 C -0.112 4.112 22 C -0.137 4.137 23 C -0.058 4.058 24 C -0.117 4.117 25 S 0.204 5.796 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.374 0.626 31 H -0.244 1.244 32 H -0.288 1.288 33 H 0.422 0.578 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.395 0.605 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.096 0.904 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 -7.542 5.724 9.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.292 4.292 3 C -0.105 4.105 4 C -0.201 4.201 5 O -0.342 6.342 6 Si 0.662 3.338 7 C -0.797 4.797 8 S 2.804 3.196 9 O -0.957 6.957 10 O -0.973 6.973 11 N -0.875 5.875 12 C -0.038 4.038 13 C 0.097 3.903 14 F -0.196 7.196 15 C -0.181 4.181 16 C -0.148 4.148 17 C -0.106 4.106 18 H 0.099 0.901 19 C -0.002 4.002 20 O -0.403 6.403 21 C -0.150 4.150 22 C -0.175 4.175 23 C -0.179 4.179 24 C -0.176 4.176 25 S 0.471 5.529 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.222 0.778 31 H -0.169 1.169 32 H -0.215 1.215 33 H 0.259 0.741 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.245 0.755 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.125 0.875 46 H 0.109 0.891 47 H 0.119 0.881 48 H 0.114 0.886 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.143 -8.796 5.586 10.638 hybrid contribution 1.716 2.734 -0.280 3.240 sum -0.427 -6.062 5.307 8.068 Atomic orbital electron populations 1.20653 0.85326 1.03197 1.04442 1.24766 1.01737 0.94983 1.07724 1.18509 0.90393 0.97010 1.04623 1.25678 1.05289 0.91981 0.97153 1.86627 1.41079 1.91872 1.14644 0.92378 0.86159 0.82802 0.72449 1.29274 1.11624 1.13292 1.25528 1.01079 0.73341 0.72927 0.72275 1.93566 1.41479 1.78104 1.82585 1.93546 1.79693 1.55226 1.68864 1.55337 1.80854 1.24442 1.26878 1.22225 1.01528 0.92825 0.87172 1.21244 0.88784 0.86187 0.94060 1.92845 1.70638 1.63292 1.92807 1.22202 0.96487 1.01233 0.98211 1.21455 1.00904 0.97902 0.94520 1.21190 0.97978 0.97724 0.93724 0.90113 1.22281 0.86509 0.96988 0.94378 1.86419 1.33108 1.72842 1.47903 1.21480 0.96552 0.99657 0.97272 1.22145 1.02841 0.98148 0.94339 1.24859 1.02048 0.94879 0.96135 1.21049 0.87390 1.03174 1.05951 1.84298 0.93574 1.06948 1.68107 0.88247 0.87890 0.89265 0.91079 0.77764 1.16863 1.21458 0.74114 0.87370 0.88084 0.91234 0.88386 0.91728 0.92584 0.92315 0.93662 0.75520 0.89406 0.92040 0.87475 0.89051 0.88141 0.88559 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.49 9.59 71.23 0.68 1.18 16 2 C -0.17 0.22 6.10 24.59 0.15 0.37 16 3 C -0.10 -0.24 4.47 -20.92 -0.09 -0.34 16 4 C -0.09 -0.47 2.25 71.24 0.16 -0.31 16 5 O -0.54 -3.20 12.55 -148.98 -1.87 -5.06 16 6 Si 0.76 1.60 28.73 68.60 1.97 3.58 16 7 C -0.70 -1.83 5.85 21.22 0.12 -1.70 16 8 S 2.71 15.31 5.28 -56.49 -0.30 15.01 16 9 O -0.97 -8.20 14.19 -128.00 -1.82 -10.02 16 10 O -0.98 -11.64 15.25 -128.00 -1.95 -13.60 16 11 N -1.11 -1.09 5.72 -187.50 -1.07 -2.16 16 12 C 0.09 -0.30 5.39 86.38 0.47 0.16 16 13 C 0.12 -0.25 0.87 -10.79 -0.01 -0.26 16 14 F -0.22 -0.90 15.59 44.97 0.70 -0.19 16 15 C -0.14 0.26 4.87 30.60 0.15 0.41 16 16 C -0.11 -0.05 4.98 30.59 0.15 0.10 16 17 C -0.09 0.18 2.43 -10.79 -0.03 0.15 16 18 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 19 C 0.08 -0.14 6.43 71.98 0.46 0.32 16 20 O -0.59 -0.44 13.20 -148.98 -1.97 -2.41 16 21 C -0.11 0.49 5.08 30.61 0.16 0.64 16 22 C -0.14 0.82 5.00 30.61 0.15 0.98 16 23 C -0.06 0.03 6.50 24.59 0.16 0.19 16 24 C -0.12 0.38 8.64 71.23 0.62 0.99 16 25 S 0.20 -0.71 23.31 -56.49 -1.32 -2.03 16 26 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 28 H 0.09 -0.62 3.30 -2.39 -0.01 -0.63 16 29 H 0.07 0.53 4.90 -2.39 -0.01 0.52 16 30 H 0.37 1.22 9.03 -74.06 -0.67 0.55 16 31 H -0.24 -0.52 7.11 99.48 0.71 0.19 16 32 H -0.29 -2.57 7.11 99.48 0.71 -1.87 16 33 H 0.42 0.10 7.40 -96.74 -0.72 -0.61 16 34 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 35 H 0.10 -0.46 7.69 -2.39 -0.02 -0.48 16 36 H 0.07 -0.07 6.90 -2.39 -0.02 -0.09 16 37 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 38 H 0.06 0.19 7.82 -2.39 -0.02 0.17 16 39 H 0.06 0.16 7.80 -2.39 -0.02 0.14 16 40 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.40 -2.81 9.12 -74.06 -0.68 -3.49 16 43 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.06 -0.10 7.80 -2.39 -0.02 -0.12 16 45 H 0.11 -1.06 8.14 -2.39 -0.02 -1.08 16 46 H 0.09 -0.66 8.14 -2.39 -0.02 -0.67 16 47 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.10 0.00 7.02 -2.39 -0.02 -0.02 16 49 H 0.10 -0.58 7.81 -2.39 -0.02 -0.60 16 Total: 0.00 -21.90 402.62 -5.32 -27.22 By element: Atomic # 1 Polarization: -12.23 SS G_CDS: -1.01 Total: -13.23 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 3.30 Total: 2.89 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -1.07 Total: -2.16 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -7.60 Total: -31.08 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.70 Total: -0.19 kcal Atomic # 14 Polarization: 1.60 SS G_CDS: 1.97 Total: 3.58 kcal Atomic # 16 Polarization: 14.60 SS G_CDS: -1.62 Total: 12.98 kcal Total: -21.90 -5.32 -27.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_15065288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.818 kcal (2) G-P(sol) polarization free energy of solvation -21.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds