Wall clock time and date at job start Mon Mar 8 2021 12:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86308 * 109.46748 * 2 1 4 4 C 1.50700 * 109.47207 * 240.00147 * 2 1 3 5 5 C 1.38216 * 119.99882 * 284.12644 * 4 2 1 6 6 S 1.76197 * 119.99989 * 359.97438 * 5 4 2 7 7 O 1.42096 * 106.40244 * 310.59645 * 6 5 4 8 8 O 1.42103 * 106.40200 * 177.67235 * 6 5 4 9 9 N 1.65605 * 107.21608 * 64.13566 * 6 5 4 10 10 C 1.46498 * 119.99972 * 64.43215 * 9 6 5 11 11 C 1.53000 * 109.47435 * 163.91563 * 10 9 6 12 12 F 1.39897 * 109.47130 * 59.99381 * 11 10 9 13 13 C 1.52996 * 109.47599 * 179.97438 * 11 10 9 14 14 C 1.52996 * 109.47223 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47233 * 299.99991 * 14 13 11 16 16 H 1.08995 * 109.46998 * 299.99729 * 15 14 13 17 17 C 1.53003 * 109.47101 * 180.02562 * 15 14 13 18 18 O 1.42898 * 109.47290 * 175.00088 * 17 15 14 19 19 C 1.52996 * 109.47008 * 59.99877 * 15 14 13 20 20 C 1.52996 * 109.47223 * 300.00128 * 19 15 14 21 21 C 1.38259 * 119.99625 * 179.72578 * 5 4 2 22 22 C 1.38209 * 120.00084 * 0.24787 * 21 5 4 23 23 C 1.38259 * 120.00106 * 0.02716 * 22 21 5 24 24 C 1.38208 * 119.99986 * 359.97438 * 23 22 21 25 25 H 0.96699 * 114.00209 * 60.00423 * 1 2 3 26 26 H 1.08999 * 109.47347 * 119.99636 * 2 1 3 27 27 H 1.48503 * 109.99699 * 298.68125 * 3 2 1 28 28 H 1.48498 * 109.99728 * 60.00183 * 3 2 1 29 29 H 0.97002 * 119.99872 * 244.70177 * 9 6 5 30 30 H 1.09005 * 109.46996 * 283.91209 * 10 9 6 31 31 H 1.08995 * 109.47651 * 43.91180 * 10 9 6 32 32 H 1.08994 * 109.46717 * 300.00101 * 13 11 10 33 33 H 1.09007 * 109.46728 * 59.99613 * 13 11 10 34 34 H 1.08999 * 109.47060 * 60.00513 * 14 13 11 35 35 H 1.09002 * 109.47034 * 179.97438 * 14 13 11 36 36 H 1.09006 * 109.46649 * 294.99699 * 17 15 14 37 37 H 1.08998 * 109.47419 * 54.99449 * 17 15 14 38 38 H 0.96693 * 114.00405 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.46920 * 60.00576 * 19 15 14 40 40 H 1.09005 * 109.47120 * 179.97438 * 19 15 14 41 41 H 1.08999 * 109.47060 * 299.99487 * 20 19 15 42 42 H 1.09002 * 109.47034 * 180.02562 * 20 19 15 43 43 H 1.08000 * 119.99373 * 180.27482 * 21 5 4 44 44 H 1.07997 * 119.99909 * 180.02562 * 22 21 5 45 45 H 1.08004 * 119.99563 * 179.97438 * 23 22 21 46 46 H 1.07999 * 119.99912 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.8863 -2.0901 -1.2987 6 16 1.2422 -3.0184 0.0533 7 8 1.8882 -2.5287 1.2203 8 8 1.2810 -4.3828 -0.3421 9 7 -0.3584 -2.6204 0.2028 10 6 -1.2987 -2.9505 -0.8710 11 6 -2.7311 -2.8541 -0.3422 12 9 -2.9754 -1.5522 0.1078 13 6 -3.7132 -3.1982 -1.4637 14 6 -5.1456 -3.1024 -0.9347 15 6 -5.3285 -4.0859 0.2230 16 1 -5.1381 -5.1000 -0.1283 17 6 -6.7611 -3.9905 0.7517 18 8 -6.9667 -4.9885 1.7535 19 6 -4.3465 -3.7418 1.3446 20 6 -2.9141 -3.8376 0.8155 21 6 2.3420 -2.7415 -2.4299 22 6 2.8473 -2.0133 -3.4903 23 6 2.8976 -0.6334 -3.4198 24 6 2.4421 0.0178 -2.2890 25 1 -0.3933 0.4416 -0.7651 26 1 1.7924 -0.5138 0.8900 27 1 1.5878 2.4586 -1.2243 28 1 1.5614 2.4679 1.2085 29 1 -0.6725 -2.1651 0.9997 30 1 -1.1682 -2.2503 -1.6962 31 1 -1.1084 -3.9648 -1.2216 32 1 -3.5825 -2.4978 -2.2886 33 1 -3.5229 -4.2125 -1.8147 34 1 -5.3361 -2.0883 -0.5835 35 1 -5.8452 -3.3471 -1.7339 36 1 -6.9239 -3.0030 1.1837 37 1 -7.4622 -4.1485 -0.0679 38 1 -7.8554 -4.9864 2.1343 39 1 -4.5370 -2.7277 1.6959 40 1 -4.4771 -4.4422 2.1695 41 1 -2.7236 -4.8517 0.4643 42 1 -2.2144 -3.5928 1.6147 43 1 2.3026 -3.8194 -2.4849 44 1 3.2028 -2.5221 -4.3741 45 1 3.2928 -0.0644 -4.2483 46 1 2.4818 1.0956 -2.2337 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17664726_2726874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:20:44 Heat of formation + Delta-G solvation = -180.572668 kcal Electronic energy + Delta-G solvation = -32499.492978 eV Core-core repulsion = 28010.728978 eV Total energy + Delta-G solvation = -4488.764000 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -48.67478 -40.70364 -39.63476 -38.60926 -37.76270 -37.42721 -37.08081 -36.02746 -32.83848 -32.39761 -32.24588 -31.89786 -27.93009 -26.94761 -24.80293 -24.44637 -23.85072 -22.80384 -21.82157 -20.85769 -20.56120 -19.32240 -18.68847 -18.25040 -18.09819 -17.67085 -17.09652 -16.85168 -16.71017 -16.42950 -16.18435 -15.90027 -15.85772 -15.66374 -15.50771 -15.24404 -15.00689 -14.64044 -14.25962 -14.19694 -14.11041 -13.91193 -13.65855 -13.55574 -13.39241 -13.33554 -13.29405 -13.13456 -12.97742 -12.89894 -12.66906 -12.39226 -12.11743 -12.00506 -11.97690 -11.57092 -11.48790 -11.16914 -11.09074 -10.82237 -10.70190 -10.50204 -10.44238 -10.06242 -4.95294 -0.71860 -0.29613 0.13626 1.20060 1.51025 1.85840 1.91508 2.36364 2.61916 3.17084 3.23595 3.33076 3.38727 3.45487 3.48291 3.58226 3.65535 3.80565 3.92939 3.99275 4.02657 4.17436 4.24163 4.28009 4.30494 4.37483 4.42513 4.44743 4.49293 4.59234 4.60673 4.61944 4.63875 4.75891 4.82356 4.87562 4.95515 5.00705 5.03236 5.04655 5.12196 5.17359 5.27490 5.30342 5.32892 5.46768 5.75942 5.97402 6.43973 6.86459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.145 4.145 3 Si 0.775 3.225 4 C -0.016 4.016 5 C -0.667 4.667 6 S 2.706 3.294 7 O -0.987 6.987 8 O -0.987 6.987 9 N -1.092 6.092 10 C 0.100 3.900 11 C 0.124 3.876 12 F -0.208 7.208 13 C -0.136 4.136 14 C -0.110 4.110 15 C -0.089 4.089 16 H 0.076 0.924 17 C 0.077 3.923 18 O -0.595 6.595 19 C -0.108 4.108 20 C -0.144 4.144 21 C -0.035 4.035 22 C -0.135 4.135 23 C -0.053 4.053 24 C -0.148 4.148 25 H 0.387 0.613 26 H 0.134 0.866 27 H -0.258 1.258 28 H -0.300 1.300 29 H 0.426 0.574 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.395 0.605 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.146 0.854 44 H 0.159 0.841 45 H 0.164 0.836 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 2.893 -7.578 8.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.253 4.253 3 Si 0.678 3.322 4 C -0.018 4.018 5 C -0.756 4.756 6 S 2.799 3.201 7 O -0.977 6.977 8 O -0.977 6.977 9 N -0.854 5.854 10 C -0.027 4.027 11 C 0.104 3.896 12 F -0.189 7.189 13 C -0.175 4.175 14 C -0.147 4.147 15 C -0.108 4.108 16 H 0.094 0.906 17 C -0.001 4.001 18 O -0.403 6.403 19 C -0.146 4.146 20 C -0.181 4.181 21 C -0.055 4.055 22 C -0.154 4.154 23 C -0.071 4.071 24 C -0.166 4.166 25 H 0.236 0.764 26 H 0.151 0.849 27 H -0.183 1.183 28 H -0.228 1.228 29 H 0.263 0.737 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.245 0.755 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.164 0.836 44 H 0.177 0.823 45 H 0.182 0.818 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.291 2.607 -6.793 7.282 hybrid contribution -1.782 0.607 -0.128 1.887 sum -2.073 3.213 -6.921 7.907 Atomic orbital electron populations 1.86683 1.15876 1.80171 1.50112 1.25922 0.85586 1.14812 0.99005 0.93577 0.90516 0.70694 0.77456 1.19948 0.94285 0.91782 0.95803 1.30487 1.19693 1.06666 1.18791 1.01174 0.72581 0.73044 0.73347 1.93519 1.74505 1.81546 1.48178 1.93544 1.86656 1.33265 1.84188 1.55006 1.24337 1.76651 1.29453 1.21993 0.87777 1.03260 0.89654 1.21077 0.94367 0.78634 0.95474 1.92848 1.95421 1.39742 1.90901 1.22113 0.93730 1.04805 0.96811 1.21449 0.96665 0.99235 0.97389 1.21202 0.93591 1.00449 0.95549 0.90556 1.22285 0.96587 0.90649 0.90573 1.86428 1.38680 1.57652 1.57569 1.21439 0.93533 1.01508 0.98100 1.22168 0.97864 1.00216 0.97902 1.21251 0.92026 1.01136 0.91045 1.21716 0.99510 0.94787 0.99382 1.21884 0.92818 0.94840 0.97518 1.21564 1.00043 1.01324 0.93664 0.76390 0.84886 1.18305 1.22767 0.73668 0.89209 0.88009 0.88974 0.88305 0.91753 0.89667 0.93489 0.92387 0.75540 0.92423 0.92010 0.89175 0.91134 0.83591 0.82340 0.81814 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.02 10.59 -148.98 -1.58 -1.56 16 2 C -0.15 -0.13 2.03 71.24 0.14 0.02 16 3 Si 0.77 -1.52 30.27 68.60 2.08 0.56 16 4 C -0.02 0.00 5.25 -19.87 -0.10 -0.11 16 5 C -0.67 -1.58 5.87 22.27 0.13 -1.45 16 6 S 2.71 16.45 5.07 -56.49 -0.29 16.16 16 7 O -0.99 -11.76 15.54 -128.00 -1.99 -13.75 16 8 O -0.99 -10.32 16.45 -128.00 -2.11 -12.42 16 9 N -1.09 -1.53 3.66 -187.49 -0.69 -2.21 16 10 C 0.10 -0.24 5.42 86.38 0.47 0.23 16 11 C 0.12 -0.20 0.86 -10.79 -0.01 -0.21 16 12 F -0.21 -0.54 15.47 44.97 0.70 0.16 16 13 C -0.14 0.68 5.00 30.59 0.15 0.83 16 14 C -0.11 0.39 5.08 30.59 0.16 0.55 16 15 C -0.09 0.05 2.43 -10.79 -0.03 0.03 16 16 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 17 C 0.08 -0.06 6.43 71.98 0.46 0.40 16 18 O -0.60 -1.18 13.20 -148.98 -1.97 -3.15 16 19 C -0.11 -0.21 4.98 30.59 0.15 -0.06 16 20 C -0.14 -0.07 4.83 30.59 0.15 0.08 16 21 C -0.04 0.00 9.55 22.27 0.21 0.21 16 22 C -0.14 0.58 10.05 22.27 0.22 0.80 16 23 C -0.05 0.31 10.05 22.27 0.22 0.53 16 24 C -0.15 0.56 8.66 22.27 0.19 0.75 16 25 H 0.39 -2.25 8.70 -74.06 -0.64 -2.89 16 26 H 0.13 0.61 5.38 -2.39 -0.01 0.60 16 27 H -0.26 0.52 6.66 99.48 0.66 1.18 16 28 H -0.30 -1.85 7.11 99.48 0.71 -1.15 16 29 H 0.43 0.79 7.39 -96.74 -0.71 0.08 16 30 H 0.09 -0.50 8.14 -2.38 -0.02 -0.52 16 31 H 0.10 -0.38 7.74 -2.39 -0.02 -0.40 16 32 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.10 -0.72 8.14 -2.38 -0.02 -0.74 16 34 H 0.06 -0.11 7.80 -2.39 -0.02 -0.12 16 35 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.05 -0.06 8.14 -2.38 -0.02 -0.08 16 37 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.40 -2.42 9.12 -74.06 -0.68 -3.10 16 39 H 0.06 0.21 7.80 -2.39 -0.02 0.20 16 40 H 0.06 0.30 7.82 -2.38 -0.02 0.28 16 41 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.07 0.13 7.23 -2.39 -0.02 0.11 16 43 H 0.15 -0.11 7.34 -2.91 -0.02 -0.13 16 44 H 0.16 -1.46 8.06 -2.91 -0.02 -1.48 16 45 H 0.16 -1.92 8.06 -2.91 -0.02 -1.95 16 46 H 0.15 -1.13 4.87 -2.91 -0.01 -1.14 16 Total: 0.00 -22.02 372.93 -4.32 -26.34 By element: Atomic # 1 Polarization: -11.74 SS G_CDS: -1.01 Total: -12.75 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 2.53 Total: 2.61 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -0.69 Total: -2.21 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -7.64 Total: -30.87 kcal Atomic # 9 Polarization: -0.54 SS G_CDS: 0.70 Total: 0.16 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: 2.08 Total: 0.56 kcal Atomic # 16 Polarization: 16.45 SS G_CDS: -0.29 Total: 16.16 kcal Total: -22.02 -4.32 -26.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17664726_2726874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.234 kcal (2) G-P(sol) polarization free energy of solvation -22.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds