Wall clock time and date at job start Mon Mar 8 2021 14:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46930 * 2 1 4 4 C 1.52999 * 109.47416 * 240.00143 * 2 1 3 5 5 C 1.53004 * 109.46887 * 119.99754 * 2 1 3 6 6 C 1.52974 * 109.43623 * 60.00634 * 5 2 1 7 7 C 1.53121 * 109.44100 * 181.64337 * 6 5 2 8 8 C 1.52845 * 109.21740 * 301.97921 * 7 6 5 9 9 C 1.53235 * 113.39740 * 286.06675 * 8 7 6 10 10 C 1.53848 * 83.16184 * 219.00404 * 9 8 7 11 11 N 1.46750 * 113.46649 * 187.29192 * 8 7 6 12 12 S 1.65595 * 136.09717 * 321.77499 * 11 8 7 13 13 O 1.42103 * 106.40054 * 336.46057 * 12 11 8 14 14 O 1.42100 * 106.40404 * 203.54098 * 12 11 8 15 15 C 1.76204 * 107.21991 * 89.99809 * 12 11 8 16 16 C 1.38228 * 120.00120 * 270.28621 * 15 12 11 17 17 C 1.38238 * 120.00120 * 180.23453 * 16 15 12 18 18 C 1.38234 * 119.99675 * 359.47825 * 17 16 15 19 19 C 1.50703 * 120.00257 * 180.27927 * 18 17 16 20 20 O 1.42908 * 109.46633 * 65.00233 * 19 18 17 21 21 Si 1.86297 * 109.47442 * 185.00250 * 19 18 17 22 22 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 23 23 C 1.38234 * 119.99818 * 89.99898 * 15 12 11 24 24 C 1.52848 * 112.68318 * 56.60899 * 8 7 6 25 25 C 1.52969 * 109.39858 * 180.20061 * 5 2 1 26 26 H 1.09000 * 109.47527 * 300.00034 * 1 2 3 27 27 H 1.08997 * 109.46943 * 60.00472 * 1 2 3 28 28 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47018 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46922 * 299.99540 * 3 2 1 31 31 H 1.09000 * 109.47043 * 59.99670 * 3 2 1 32 32 H 1.09000 * 109.47109 * 299.99538 * 4 2 1 33 33 H 1.08989 * 109.47229 * 59.99752 * 4 2 1 34 34 H 1.09003 * 109.47105 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.43815 * 300.08829 * 5 2 1 36 36 H 1.09003 * 109.47912 * 61.64654 * 6 5 2 37 37 H 1.08998 * 109.47727 * 301.63698 * 6 5 2 38 38 H 1.08996 * 109.51032 * 182.05377 * 7 6 5 39 39 H 1.08997 * 109.55535 * 61.93087 * 7 6 5 40 40 H 1.09005 * 114.21902 * 332.76022 * 9 8 7 41 41 H 1.09001 * 114.21965 * 105.43224 * 9 8 7 42 42 H 1.09001 * 113.44923 * 271.28374 * 10 9 8 43 43 H 1.08997 * 113.55729 * 140.78076 * 10 9 8 44 44 H 1.08004 * 120.00256 * 359.97438 * 16 15 12 45 45 H 1.08002 * 120.00519 * 179.76445 * 17 16 15 46 46 H 1.09000 * 109.46946 * 305.01070 * 19 18 17 47 47 H 0.96707 * 113.99859 * 180.02562 * 20 19 18 48 48 H 1.48494 * 109.99952 * 178.68263 * 21 19 18 49 49 H 1.48500 * 109.99918 * 300.00446 * 21 19 18 50 50 H 1.07997 * 120.00460 * 180.02562 * 22 18 17 51 51 H 1.08001 * 120.00310 * 0.02562 * 23 15 12 52 52 H 1.08995 * 109.50928 * 63.32602 * 24 8 7 53 53 H 1.08993 * 109.51090 * 183.48159 * 24 8 7 54 54 H 1.09004 * 109.47384 * 298.33749 * 25 5 2 55 55 H 1.09002 * 109.47426 * 58.34614 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5297 -2.1634 1.2485 7 6 2.0059 -2.8732 2.5189 8 6 3.5324 -2.8264 2.5792 9 6 4.2100 -3.7809 1.5904 10 6 5.1886 -4.0007 2.7570 11 7 4.0989 -3.6260 3.6716 12 16 3.6941 -3.9555 5.2432 13 8 2.8725 -2.8812 5.6796 14 8 4.8987 -4.3284 5.8981 15 6 2.6710 -5.3900 5.2285 16 6 1.2998 -5.2599 5.1122 17 6 0.4968 -6.3851 5.1056 18 6 1.0659 -7.6409 5.2044 19 6 0.1911 -8.8680 5.1909 20 8 -0.4533 -8.9794 3.9202 21 14 1.2372 -10.3799 5.4914 22 6 2.4376 -7.7714 5.3154 23 6 3.2402 -6.6459 5.3274 24 6 4.0812 -1.4010 2.5204 25 6 3.5696 -0.7159 1.2502 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1391 34 1 3.1301 -0.7216 -1.2489 35 1 1.6750 -0.2078 2.1389 36 1 1.9170 -2.6854 0.3735 37 1 0.4401 -2.1633 1.2188 38 1 1.6738 -3.9112 2.5022 39 1 1.5913 -2.3724 3.3938 40 1 3.6126 -4.6553 1.3321 41 1 4.6500 -3.2881 0.7233 42 1 6.0213 -3.2973 2.7630 43 1 5.5103 -5.0363 2.8665 44 1 0.8554 -4.2789 5.0307 45 1 -0.5749 -6.2833 5.0185 46 1 -0.5623 -8.7857 5.9743 47 1 -1.0341 -9.7485 3.8398 48 1 0.3817 -11.5935 5.5121 49 1 2.2683 -10.5033 4.4299 50 1 2.8824 -8.7525 5.3922 51 1 4.3119 -6.7478 5.4140 52 1 3.7441 -0.8448 3.3951 53 1 5.1706 -1.4308 2.5046 54 1 3.9354 -1.2531 0.3751 55 1 3.9295 0.3126 1.2219 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761002_13421422.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:07:40 Heat of formation + Delta-G solvation = -49.038275 kcal Electronic energy + Delta-G solvation = -35420.357945 eV Core-core repulsion = 31130.594874 eV Total energy + Delta-G solvation = -4289.763071 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.185 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.88022 -40.68578 -39.39117 -38.47327 -37.85573 -37.09959 -34.97781 -33.23793 -32.29029 -32.05859 -29.65789 -29.06344 -28.13438 -28.07509 -27.27246 -24.45916 -24.14766 -23.55329 -22.93525 -22.51003 -21.09668 -19.79993 -19.19051 -18.88067 -18.66532 -17.97648 -17.47126 -17.05884 -16.73067 -16.39596 -16.18344 -15.88007 -15.53421 -15.34507 -15.24092 -15.03705 -14.81362 -14.70429 -14.62315 -14.44283 -14.36019 -14.04734 -13.98908 -13.94958 -13.40585 -13.38054 -13.31713 -13.21921 -13.14901 -12.94556 -12.68952 -12.64800 -12.55612 -12.49336 -12.46524 -12.10354 -12.01776 -11.92965 -11.89283 -11.74090 -11.61543 -11.27796 -11.05617 -10.91155 -10.76345 -10.69811 -10.41568 -10.20310 -10.01233 -4.97960 -0.89312 -0.43520 0.12765 1.18855 1.53732 1.75863 1.87318 2.26453 2.61167 2.93123 3.18765 3.41023 3.55241 3.64800 3.67173 3.71178 3.76916 3.79575 3.89270 3.99844 4.05522 4.10502 4.16721 4.28654 4.32159 4.35683 4.39635 4.42998 4.53752 4.54439 4.55803 4.62307 4.67769 4.75120 4.78297 4.81086 4.85384 4.89420 4.91020 4.92764 4.96903 4.98247 5.00785 5.07503 5.14706 5.16502 5.17676 5.20066 5.23590 5.24249 5.28803 5.31241 5.41296 5.42612 5.52419 5.62747 5.65018 5.65687 5.72511 6.49070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.146 4.146 4 C -0.144 4.144 5 C -0.077 4.077 6 C -0.105 4.105 7 C -0.135 4.135 8 C 0.185 3.815 9 C -0.130 4.130 10 C 0.119 3.881 11 N -1.043 6.043 12 S 2.720 3.280 13 O -0.982 6.982 14 O -0.985 6.985 15 C -0.675 4.675 16 C -0.025 4.025 17 C -0.119 4.119 18 C -0.024 4.024 19 C -0.093 4.093 20 O -0.554 6.554 21 Si 0.759 3.241 22 C -0.140 4.140 23 C -0.022 4.022 24 C -0.122 4.122 25 C -0.108 4.108 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.104 0.896 47 H 0.399 0.601 48 H -0.281 1.281 49 H -0.291 1.291 50 H 0.155 0.845 51 H 0.154 0.846 52 H 0.051 0.949 53 H 0.083 0.917 54 H 0.086 0.914 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -3.198 -4.364 5.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.061 4.061 3 C -0.203 4.203 4 C -0.201 4.201 5 C -0.096 4.096 6 C -0.142 4.142 7 C -0.174 4.174 8 C 0.099 3.901 9 C -0.169 4.169 10 C -0.005 4.005 11 N -0.883 5.883 12 S 2.816 3.184 13 O -0.973 6.973 14 O -0.976 6.976 15 C -0.764 4.764 16 C -0.045 4.045 17 C -0.138 4.138 18 C -0.024 4.024 19 C -0.201 4.201 20 O -0.364 6.364 21 Si 0.663 3.337 22 C -0.159 4.159 23 C -0.041 4.041 24 C -0.161 4.161 25 C -0.145 4.145 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.122 0.878 47 H 0.250 0.750 48 H -0.208 1.208 49 H -0.218 1.218 50 H 0.172 0.828 51 H 0.172 0.828 52 H 0.070 0.930 53 H 0.101 0.899 54 H 0.105 0.895 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.044 -3.008 -3.761 4.817 hybrid contribution -1.569 -0.537 -0.406 1.708 sum -1.614 -3.545 -4.168 5.705 Atomic orbital electron populations 1.21956 0.95099 1.01965 1.01314 1.20496 0.95122 0.95220 0.95227 1.21952 1.01539 0.95484 1.01294 1.21975 1.01622 1.00396 0.96143 1.21167 0.95651 0.95574 0.97162 1.21594 1.00908 0.94930 0.96812 1.21945 0.93956 1.01565 0.99922 1.21418 0.93884 0.91928 0.82862 1.23610 0.97423 0.99499 0.96413 1.22823 0.90233 1.02222 0.85203 1.60068 1.38341 1.62063 1.27840 1.00662 0.72838 0.73485 0.71438 1.93536 1.70522 1.53344 1.79886 1.93537 1.46369 1.84876 1.72806 1.30832 1.08994 1.17555 1.18977 1.21067 0.91340 1.00316 0.91744 1.21340 1.01312 0.91340 0.99761 1.19887 0.93711 0.94778 0.94065 1.25102 1.01780 1.04192 0.89066 1.86531 1.64731 1.51944 1.33199 0.94019 0.78471 0.73195 0.88014 1.21369 0.92967 0.99712 1.01803 1.21069 1.01267 0.90374 0.91439 1.21787 1.01518 0.93520 0.99263 1.21672 0.94724 1.01112 0.97023 0.93409 0.92900 0.92022 0.91742 0.92918 0.93443 0.91930 0.93259 0.91587 0.92625 0.89829 0.91261 0.90923 0.92413 0.88167 0.87158 0.88417 0.89337 0.83828 0.83499 0.87782 0.74989 1.20787 1.21832 0.82830 0.82818 0.93007 0.89883 0.89517 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 8.12 71.98 0.58 0.81 16 2 C -0.06 0.17 0.57 -52.18 -0.03 0.14 16 3 C -0.15 0.28 8.12 71.98 0.58 0.86 16 4 C -0.14 0.63 7.77 71.98 0.56 1.19 16 5 C -0.08 0.18 1.50 -10.81 -0.02 0.16 16 6 C -0.10 0.32 4.41 30.63 0.14 0.45 16 7 C -0.14 0.04 5.29 30.58 0.16 0.20 16 8 C 0.19 -0.20 1.04 -0.04 0.00 -0.20 16 9 C -0.13 0.80 7.16 30.96 0.22 1.02 16 10 C 0.12 -0.42 8.38 82.98 0.70 0.28 16 11 N -1.04 -2.21 3.86 -508.31 -1.96 -4.17 16 12 S 2.72 22.34 6.16 -56.49 -0.35 21.99 16 13 O -0.98 -13.35 17.08 -128.00 -2.19 -15.54 16 14 O -0.99 -13.11 17.28 -128.00 -2.21 -15.33 16 15 C -0.67 -3.51 5.97 22.27 0.13 -3.38 16 16 C -0.03 -0.10 9.52 22.27 0.21 0.11 16 17 C -0.12 -0.27 9.69 22.27 0.22 -0.05 16 18 C -0.02 -0.03 5.38 -19.87 -0.11 -0.14 16 19 C -0.09 0.23 2.79 71.24 0.20 0.43 16 20 O -0.55 0.22 12.81 -148.98 -1.91 -1.69 16 21 Si 0.76 -2.79 29.85 68.60 2.05 -0.74 16 22 C -0.14 -0.15 8.67 22.27 0.19 0.04 16 23 C -0.02 -0.07 9.52 22.27 0.21 0.14 16 24 C -0.12 0.13 5.26 30.58 0.16 0.29 16 25 C -0.11 0.43 4.40 30.62 0.13 0.56 16 26 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 27 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.06 -0.14 6.39 -2.39 -0.02 -0.15 16 29 H 0.06 -0.19 6.38 -2.39 -0.02 -0.21 16 30 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.06 -0.31 6.46 -2.39 -0.02 -0.33 16 33 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.07 -0.37 6.46 -2.39 -0.02 -0.39 16 35 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.08 -0.45 6.31 -2.39 -0.02 -0.47 16 37 H 0.07 -0.18 6.34 -2.39 -0.02 -0.19 16 38 H 0.07 -0.06 8.12 -2.39 -0.02 -0.08 16 39 H 0.06 0.22 7.93 -2.39 -0.02 0.20 16 40 H 0.10 -0.66 8.10 -2.38 -0.02 -0.68 16 41 H 0.11 -1.09 7.34 -2.39 -0.02 -1.11 16 42 H 0.10 -0.54 7.28 -2.39 -0.02 -0.56 16 43 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.14 0.38 7.62 -2.91 -0.02 0.36 16 45 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 46 H 0.10 -0.69 7.96 -2.39 -0.02 -0.71 16 47 H 0.40 -3.34 8.74 -74.05 -0.65 -3.99 16 48 H -0.28 -0.08 7.11 99.48 0.71 0.62 16 49 H -0.29 -0.82 7.05 99.48 0.70 -0.12 16 50 H 0.15 -0.51 4.87 -2.91 -0.01 -0.53 16 51 H 0.15 0.04 7.62 -2.91 -0.02 0.02 16 52 H 0.05 0.18 8.14 -2.39 -0.02 0.17 16 53 H 0.08 -0.26 7.01 -2.39 -0.02 -0.28 16 54 H 0.09 -0.60 5.72 -2.39 -0.01 -0.61 16 55 H 0.07 -0.28 6.33 -2.39 -0.02 -0.29 16 Total: 0.00 -20.86 420.94 -2.05 -22.90 By element: Atomic # 1 Polarization: -10.62 SS G_CDS: 0.27 Total: -10.34 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 4.25 Total: 2.92 kcal Atomic # 7 Polarization: -2.21 SS G_CDS: -1.96 Total: -4.17 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -6.31 Total: -32.55 kcal Atomic # 14 Polarization: -2.79 SS G_CDS: 2.05 Total: -0.74 kcal Atomic # 16 Polarization: 22.34 SS G_CDS: -0.35 Total: 21.99 kcal Total: -20.86 -2.05 -22.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761002_13421422.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.136 kcal (2) G-P(sol) polarization free energy of solvation -20.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds