Wall clock time and date at job start Mon Mar 8 2021 14:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47214 * 2 1 4 4 C 1.53003 * 109.47011 * 240.00051 * 2 1 3 5 5 C 1.53001 * 109.47216 * 120.00555 * 2 1 3 6 6 C 1.52972 * 109.43488 * 59.99563 * 5 2 1 7 7 C 1.53123 * 109.44138 * 181.64551 * 6 5 2 8 8 C 1.52851 * 109.22132 * 301.98896 * 7 6 5 9 9 C 1.53479 * 113.40404 * 285.94828 * 8 7 6 10 10 C 1.53543 * 83.17361 * 271.19915 * 9 8 7 11 11 N 1.46750 * 113.46291 * 187.28800 * 8 7 6 12 12 S 1.65600 * 136.09344 * 267.96350 * 11 8 7 13 13 O 1.42099 * 106.40362 * 338.85060 * 12 11 8 14 14 O 1.42104 * 106.40261 * 205.93328 * 12 11 8 15 15 C 1.76201 * 107.22054 * 92.39098 * 12 11 8 16 16 C 1.33392 * 125.20211 * 84.12935 * 15 12 11 17 17 C 1.50701 * 122.53593 * 0.02714 * 16 15 12 18 18 O 1.42898 * 109.47090 * 75.60700 * 17 16 15 19 19 Si 1.86309 * 109.46641 * 195.60616 * 17 16 15 20 20 C 1.38418 * 114.91944 * 179.76009 * 16 15 12 21 21 C 1.33391 * 114.92265 * 0.24382 * 20 16 15 22 22 S 1.75884 * 125.20192 * 264.27060 * 15 12 11 23 23 C 1.52853 * 112.67735 * 56.60254 * 8 7 6 24 24 C 1.52965 * 109.39853 * 180.19698 * 5 2 1 25 25 H 1.09003 * 109.46950 * 300.00138 * 1 2 3 26 26 H 1.09000 * 109.47117 * 59.99233 * 1 2 3 27 27 H 1.08998 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46921 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47405 * 300.00244 * 3 2 1 30 30 H 1.09001 * 109.46879 * 60.00400 * 3 2 1 31 31 H 1.08996 * 109.47186 * 300.00768 * 4 2 1 32 32 H 1.09006 * 109.46769 * 59.99978 * 4 2 1 33 33 H 1.08994 * 109.47056 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.43275 * 300.08617 * 5 2 1 35 35 H 1.08991 * 109.47553 * 61.65405 * 6 5 2 36 36 H 1.09001 * 109.48347 * 301.63249 * 6 5 2 37 37 H 1.09006 * 109.51177 * 182.07380 * 7 6 5 38 38 H 1.08990 * 109.55839 * 61.94108 * 7 6 5 39 39 H 1.09010 * 114.40948 * 157.66394 * 9 8 7 40 40 H 1.08999 * 114.28612 * 24.73016 * 9 8 7 41 41 H 1.09000 * 113.45819 * 219.21299 * 10 9 8 42 42 H 1.08992 * 113.45591 * 88.80358 * 10 9 8 43 43 H 1.09002 * 109.47166 * 315.60184 * 17 16 15 44 44 H 0.96708 * 113.99961 * 60.00050 * 18 17 16 45 45 H 1.48498 * 110.00067 * 58.68131 * 19 17 16 46 46 H 1.48498 * 109.99563 * 179.97438 * 19 17 16 47 47 H 1.08003 * 122.54166 * 180.22607 * 20 16 15 48 48 H 1.08003 * 125.20417 * 179.97438 * 21 20 16 49 49 H 1.08997 * 109.51173 * 63.32677 * 23 8 7 50 50 H 1.08993 * 109.51004 * 183.47939 * 23 8 7 51 51 H 1.08997 * 109.47376 * 298.32597 * 24 5 2 52 52 H 1.08993 * 109.47826 * 58.34225 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 6 1.5296 -2.1634 1.2483 7 6 2.0058 -2.8734 2.5186 8 6 3.5324 -2.8267 2.5790 9 6 4.2113 -3.7846 1.5905 10 6 4.0937 -4.7778 2.7556 11 7 4.0987 -3.6264 3.6714 12 16 4.5413 -3.3545 5.2438 13 8 4.7477 -1.9539 5.3661 14 8 5.5402 -4.3171 5.5517 15 6 3.1492 -3.7421 6.2520 16 6 2.8269 -4.9631 6.6815 17 6 3.6433 -6.1835 6.3419 18 8 4.8359 -6.1929 7.1289 19 14 2.6483 -7.7165 6.7036 20 6 1.6891 -5.0235 7.4675 21 6 1.0845 -3.8523 7.6721 22 16 1.9700 -2.5786 6.8431 23 6 4.0811 -1.4012 2.5203 24 6 3.5697 -0.7161 1.2500 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6765 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7209 -1.2495 34 1 1.6751 -0.2080 2.1388 35 1 1.9168 -2.6854 0.3733 36 1 0.4400 -2.1634 1.2188 37 1 1.6738 -3.9116 2.5017 38 1 1.5913 -2.3729 3.3935 39 1 5.2360 -3.5155 1.3341 40 1 3.6025 -4.0391 0.7229 41 1 4.9652 -5.4231 2.8653 42 1 3.1551 -5.3319 2.7603 43 1 3.9060 -6.1620 5.2842 44 1 4.6776 -6.2119 8.0828 45 1 1.3901 -7.7033 5.9150 46 1 3.4421 -8.9270 6.3723 47 1 1.3187 -5.9489 7.8833 48 1 0.1880 -3.7081 8.2570 49 1 3.7439 -0.8450 3.3949 50 1 5.1705 -1.4309 2.5045 51 1 3.9353 -1.2533 0.3749 52 1 3.9296 0.3123 1.2217 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761002_13652106.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:07:47 Heat of formation + Delta-G solvation = -37.373514 kcal Electronic energy + Delta-G solvation = -34624.358914 eV Core-core repulsion = 30424.253912 eV Total energy + Delta-G solvation = -4200.105002 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.142 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.94768 -40.08935 -39.43679 -38.32564 -37.10475 -36.94831 -35.02183 -32.11245 -31.43879 -29.72687 -29.12799 -28.15220 -28.09829 -27.98858 -24.56170 -24.25883 -23.57982 -22.68296 -21.50095 -20.82573 -19.62607 -19.21347 -18.92485 -18.31832 -18.10801 -17.14714 -16.78176 -16.60502 -16.18018 -16.00736 -15.72522 -15.47707 -15.20818 -15.11775 -15.06456 -14.80610 -14.69093 -14.44160 -14.28731 -14.05761 -13.93921 -13.73709 -13.42135 -13.32729 -13.24550 -13.21976 -13.19516 -12.80360 -12.70049 -12.67287 -12.54608 -12.51633 -12.48986 -12.19881 -12.10532 -12.03997 -11.81907 -11.75462 -11.65937 -11.31966 -11.07809 -10.94531 -10.80845 -10.49004 -10.47434 -10.08156 -9.70876 -5.06624 -0.92328 -0.61137 0.25991 0.69538 1.18343 1.24755 1.62023 1.80316 1.92523 2.58495 3.04144 3.33449 3.43650 3.53743 3.59756 3.65221 3.74490 3.85518 3.95709 4.00910 4.04632 4.11598 4.25408 4.27827 4.29487 4.36668 4.38185 4.47528 4.51539 4.57151 4.62104 4.68507 4.74765 4.78216 4.84238 4.86137 4.88682 4.92452 4.94247 4.97279 5.03992 5.10657 5.13168 5.14815 5.16238 5.19073 5.21429 5.26120 5.29432 5.35920 5.40356 5.50704 5.58471 5.63995 5.70175 6.74788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.147 4.147 4 C -0.145 4.145 5 C -0.075 4.075 6 C -0.108 4.108 7 C -0.118 4.118 8 C 0.182 3.818 9 C -0.127 4.127 10 C 0.112 3.888 11 N -1.034 6.034 12 S 2.723 3.277 13 O -0.983 6.983 14 O -0.952 6.952 15 C -0.800 4.800 16 C 0.005 3.995 17 C -0.097 4.097 18 O -0.531 6.531 19 Si 0.799 3.201 20 C -0.168 4.168 21 C -0.145 4.145 22 S 0.193 5.807 23 C -0.127 4.127 24 C -0.107 4.107 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.388 0.612 45 H -0.265 1.265 46 H -0.291 1.291 47 H 0.190 0.810 48 H 0.214 0.786 49 H 0.054 0.946 50 H 0.058 0.942 51 H 0.083 0.917 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 -3.157 -1.463 8.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.060 4.060 3 C -0.205 4.205 4 C -0.202 4.202 5 C -0.094 4.094 6 C -0.146 4.146 7 C -0.157 4.157 8 C 0.095 3.905 9 C -0.167 4.167 10 C -0.012 4.012 11 N -0.874 5.874 12 S 2.815 3.185 13 O -0.974 6.974 14 O -0.942 6.942 15 C -1.002 5.002 16 C -0.014 4.014 17 C -0.207 4.207 18 O -0.337 6.337 19 Si 0.700 3.300 20 C -0.197 4.197 21 C -0.282 4.282 22 S 0.460 5.540 23 C -0.166 4.166 24 C -0.145 4.145 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.237 0.763 45 H -0.191 1.191 46 H -0.219 1.219 47 H 0.207 0.793 48 H 0.230 0.770 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.102 0.898 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.556 -1.894 -1.938 8.027 hybrid contribution 0.116 -0.680 0.446 0.821 sum -7.440 -2.574 -1.492 8.013 Atomic orbital electron populations 1.21944 0.94598 1.02237 1.01386 1.20489 0.95431 0.94939 0.95139 1.21967 1.01278 0.95852 1.01368 1.21987 1.01356 1.00683 0.96216 1.21154 0.94759 0.96159 0.97307 1.21678 1.01337 0.94515 0.97027 1.21779 0.92007 1.02372 0.99560 1.21599 0.94401 0.91817 0.82663 1.23541 1.02611 0.94305 0.96275 1.22848 1.03356 0.89285 0.85738 1.60453 1.79180 1.23578 1.24183 1.00831 0.73532 0.72663 0.71508 1.93541 1.85299 1.32259 1.86311 1.93660 1.54769 1.62595 1.83202 1.35772 1.28976 1.06106 1.29357 1.19494 0.94837 0.93640 0.93429 1.25630 0.92379 1.03978 0.98702 1.86784 1.27828 1.96848 1.22250 0.93558 0.75451 0.71407 0.89568 1.20504 0.95795 1.00987 1.02368 1.26657 1.04251 0.95051 1.02291 1.84494 1.15579 1.08867 1.45089 1.21842 1.00299 0.94793 0.99656 1.21637 0.95496 1.00675 0.96653 0.93283 0.92928 0.91564 0.92303 0.92798 0.93360 0.91429 0.93202 0.92135 0.92426 0.89569 0.90365 0.89600 0.92453 0.88477 0.86327 0.90043 0.87851 0.88457 0.76302 1.19106 1.21854 0.79285 0.76952 0.92725 0.92311 0.89811 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.43 8.12 71.98 0.58 1.01 16 2 C -0.06 0.18 0.57 -52.18 -0.03 0.15 16 3 C -0.15 0.17 8.12 71.98 0.58 0.75 16 4 C -0.15 0.62 7.77 71.98 0.56 1.18 16 5 C -0.08 0.18 1.50 -10.81 -0.02 0.17 16 6 C -0.11 0.56 4.40 30.63 0.13 0.69 16 7 C -0.12 0.34 5.26 30.59 0.16 0.50 16 8 C 0.18 0.04 1.04 0.03 0.00 0.04 16 9 C -0.13 0.54 7.17 30.94 0.22 0.77 16 10 C 0.11 -0.20 8.31 82.86 0.69 0.49 16 11 N -1.03 -4.44 3.88 -508.67 -1.97 -6.41 16 12 S 2.72 30.71 6.08 -56.49 -0.34 30.36 16 13 O -0.98 -16.43 16.20 -128.00 -2.07 -18.51 16 14 O -0.95 -15.89 14.65 -119.64 -1.75 -17.64 16 15 C -0.80 -5.08 6.57 66.72 0.44 -4.64 16 16 C 0.00 0.01 5.12 -20.92 -0.11 -0.10 16 17 C -0.10 -0.26 1.81 71.24 0.13 -0.13 16 18 O -0.53 -3.29 11.11 -128.80 -1.43 -4.72 16 19 Si 0.80 -2.78 30.26 68.60 2.08 -0.70 16 20 C -0.17 0.69 8.74 21.22 0.19 0.87 16 21 C -0.14 0.66 11.23 66.72 0.75 1.41 16 22 S 0.19 0.53 23.16 -56.49 -1.31 -0.78 16 23 C -0.13 -0.45 4.54 30.59 0.14 -0.31 16 24 C -0.11 0.12 4.41 30.62 0.14 0.25 16 25 H 0.05 -0.09 8.14 -2.39 -0.02 -0.10 16 26 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.07 -0.30 6.39 -2.39 -0.02 -0.31 16 28 H 0.06 -0.06 6.38 -2.39 -0.02 -0.08 16 29 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.07 -0.40 6.46 -2.39 -0.02 -0.42 16 32 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 33 H 0.06 -0.26 6.47 -2.39 -0.02 -0.28 16 34 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.09 -0.66 5.73 -2.39 -0.01 -0.68 16 36 H 0.08 -0.46 6.34 -2.39 -0.02 -0.47 16 37 H 0.09 -0.48 7.01 -2.38 -0.02 -0.49 16 38 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.10 -0.35 8.12 -2.38 -0.02 -0.37 16 40 H 0.12 -1.13 7.36 -2.39 -0.02 -1.14 16 41 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.10 -0.66 7.28 -2.39 -0.02 -0.67 16 43 H 0.10 0.44 7.28 -2.39 -0.02 0.42 16 44 H 0.39 -1.30 8.70 -74.05 -0.64 -1.94 16 45 H -0.27 0.34 7.11 99.48 0.71 1.04 16 46 H -0.29 -1.14 7.11 99.48 0.71 -0.43 16 47 H 0.19 -2.16 5.75 -2.91 -0.02 -2.18 16 48 H 0.21 -2.53 8.06 -2.91 -0.02 -2.55 16 49 H 0.05 0.45 7.38 -2.39 -0.02 0.44 16 50 H 0.06 0.34 8.13 -2.39 -0.02 0.32 16 51 H 0.08 -0.31 6.32 -2.39 -0.02 -0.33 16 52 H 0.07 0.01 6.33 -2.39 -0.02 -0.01 16 Total: 0.00 -24.14 404.86 -1.92 -26.06 By element: Atomic # 1 Polarization: -11.09 SS G_CDS: 0.33 Total: -10.76 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 4.56 Total: 3.10 kcal Atomic # 7 Polarization: -4.44 SS G_CDS: -1.97 Total: -6.41 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -5.26 Total: -40.87 kcal Atomic # 14 Polarization: -2.78 SS G_CDS: 2.08 Total: -0.70 kcal Atomic # 16 Polarization: 31.23 SS G_CDS: -1.65 Total: 29.58 kcal Total: -24.14 -1.92 -26.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761002_13652106.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.314 kcal (2) G-P(sol) polarization free energy of solvation -24.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds