Wall clock time and date at job start Mon Mar 8 2021 14:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47468 * 2 1 4 4 C 1.53006 * 109.47153 * 239.99841 * 2 1 3 5 5 C 1.53003 * 109.47060 * 120.00276 * 2 1 3 6 6 C 1.52972 * 109.43807 * 59.99696 * 5 2 1 7 7 C 1.53112 * 109.44632 * 181.64220 * 6 5 2 8 8 C 1.52849 * 109.22405 * 301.99346 * 7 6 5 9 9 C 1.53488 * 113.40417 * 285.94434 * 8 7 6 10 10 C 1.53540 * 83.17104 * 271.20029 * 9 8 7 11 11 N 1.46748 * 113.46658 * 187.28400 * 8 7 6 12 12 S 1.65604 * 136.09573 * 267.96655 * 11 8 7 13 13 O 1.42102 * 106.40211 * 22.72560 * 12 11 8 14 14 O 1.42099 * 106.40248 * 155.65036 * 12 11 8 15 15 C 1.76204 * 107.21285 * 269.18621 * 12 11 8 16 16 C 1.33391 * 122.53538 * 164.46668 * 15 12 11 17 17 C 1.50698 * 125.20448 * 0.02632 * 16 15 12 18 18 O 1.42897 * 109.47478 * 38.88783 * 17 16 15 19 19 Si 1.86293 * 109.47215 * 158.89402 * 17 16 15 20 20 S 1.75890 * 109.59268 * 179.90630 * 16 15 12 21 21 C 1.75890 * 90.96784 * 0.29871 * 20 16 15 22 22 C 1.33393 * 109.59456 * 359.83359 * 21 20 16 23 23 C 1.52850 * 112.68106 * 56.59870 * 8 7 6 24 24 C 1.52965 * 109.40020 * 180.19781 * 5 2 1 25 25 H 1.09004 * 109.46985 * 300.00414 * 1 2 3 26 26 H 1.09002 * 109.46854 * 59.99555 * 1 2 3 27 27 H 1.08997 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47611 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47447 * 300.00082 * 3 2 1 30 30 H 1.09004 * 109.47356 * 59.99813 * 3 2 1 31 31 H 1.08997 * 109.47218 * 300.00310 * 4 2 1 32 32 H 1.09002 * 109.46747 * 60.00539 * 4 2 1 33 33 H 1.08994 * 109.47021 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.43241 * 300.08354 * 5 2 1 35 35 H 1.09005 * 109.47143 * 61.64700 * 6 5 2 36 36 H 1.09000 * 109.48062 * 301.64010 * 6 5 2 37 37 H 1.08992 * 109.51652 * 182.07021 * 7 6 5 38 38 H 1.09004 * 109.55635 * 61.93948 * 7 6 5 39 39 H 1.08995 * 114.40828 * 157.66254 * 9 8 7 40 40 H 1.08996 * 114.28132 * 24.72942 * 9 8 7 41 41 H 1.09001 * 113.45514 * 219.20560 * 10 9 8 42 42 H 1.08995 * 113.45990 * 88.80018 * 10 9 8 43 43 H 1.09008 * 109.47113 * 278.89114 * 17 16 15 44 44 H 0.96706 * 113.99614 * 65.68137 * 18 17 16 45 45 H 1.48502 * 110.00411 * 58.67983 * 19 17 16 46 46 H 1.48504 * 110.00087 * 180.02562 * 19 17 16 47 47 H 1.07998 * 125.19924 * 179.86357 * 21 20 16 48 48 H 1.07993 * 122.53554 * 180.02562 * 22 21 20 49 49 H 1.08997 * 109.51066 * 63.32116 * 23 8 7 50 50 H 1.08998 * 109.51465 * 183.48256 * 23 8 7 51 51 H 1.09008 * 109.47583 * 298.32962 * 24 5 2 52 52 H 1.09002 * 109.47953 * 58.33449 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5296 -2.1634 1.2484 7 6 2.0058 -2.8734 2.5187 8 6 3.5324 -2.8266 2.5792 9 6 4.2114 -3.7846 1.5907 10 6 4.0937 -4.7776 2.7558 11 7 4.0987 -3.6262 3.6716 12 16 4.5412 -3.3542 5.2441 13 8 3.8120 -2.2131 5.6745 14 8 4.4763 -4.6119 5.9024 15 6 6.2395 -2.8849 5.2341 16 6 6.8305 -2.3079 6.2816 17 6 6.1558 -1.9819 7.5891 18 8 5.2553 -3.0357 7.9362 19 14 7.4428 -1.7999 8.9236 20 16 8.5187 -1.9889 5.9045 21 6 8.3186 -2.6692 4.2949 22 6 7.0599 -3.0816 4.1368 23 6 4.0811 -1.4012 2.5204 24 6 3.5696 -0.7161 1.2501 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 1.6751 -0.2079 2.1388 35 1 1.9168 -2.6854 0.3733 36 1 0.4400 -2.1633 1.2189 37 1 1.6738 -3.9114 2.5018 38 1 1.5913 -2.3727 3.3937 39 1 5.2360 -3.5155 1.3344 40 1 3.6026 -4.0390 0.7232 41 1 4.9652 -5.4230 2.8655 42 1 3.1551 -5.3317 2.7606 43 1 5.6016 -1.0486 7.4891 44 1 5.6904 -3.8781 8.1266 45 1 8.4042 -0.7283 8.5594 46 1 6.7901 -1.4789 10.2183 47 1 9.0961 -2.7422 3.5489 48 1 6.7079 -3.5352 3.2221 49 1 3.7438 -0.8449 3.3950 50 1 5.1706 -1.4308 2.5047 51 1 3.9354 -1.2534 0.3750 52 1 3.9296 0.3124 1.2217 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761002_14772022.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:07:53 Heat of formation + Delta-G solvation = -40.052643 kcal Electronic energy + Delta-G solvation = -34625.268497 eV Core-core repulsion = 30425.047319 eV Total energy + Delta-G solvation = -4200.221178 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.142 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.89244 -39.72953 -39.41617 -38.24808 -37.78084 -36.86440 -34.98895 -32.10807 -31.90009 -29.63403 -29.07410 -28.15050 -28.07430 -27.60862 -24.60275 -24.41798 -23.45840 -22.56908 -21.71813 -20.98958 -19.51445 -19.21697 -18.79554 -18.33702 -17.82430 -17.32045 -17.14260 -16.62155 -16.40253 -16.14189 -15.57495 -15.47167 -15.29800 -15.18205 -15.04765 -14.75672 -14.65225 -14.43169 -14.35755 -14.17299 -14.02942 -13.86524 -13.38722 -13.27383 -13.20824 -13.16405 -13.12036 -12.82590 -12.71398 -12.68772 -12.65453 -12.54552 -12.47699 -12.18531 -12.08492 -12.01570 -11.75434 -11.67664 -11.60623 -11.28146 -11.13382 -11.05504 -10.91965 -10.76875 -10.20559 -10.03534 -9.79226 -5.23109 -0.83598 -0.56882 0.29019 0.60142 0.98427 1.12967 1.42514 1.74776 1.88739 2.68954 3.05248 3.21394 3.27425 3.42147 3.65287 3.68451 3.78655 3.87189 3.99434 4.00745 4.04462 4.09813 4.25388 4.28758 4.34913 4.38086 4.43155 4.52828 4.54254 4.61674 4.63426 4.69148 4.78488 4.81793 4.85087 4.85211 4.90809 4.95678 4.97036 5.03195 5.06389 5.11127 5.14166 5.16170 5.19215 5.22625 5.24364 5.28360 5.30918 5.41580 5.42608 5.51015 5.64474 5.66590 5.72167 6.29089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.078 4.078 6 C -0.106 4.106 7 C -0.124 4.124 8 C 0.184 3.816 9 C -0.126 4.126 10 C 0.115 3.885 11 N -1.048 6.048 12 S 2.742 3.258 13 O -0.986 6.986 14 O -0.981 6.981 15 C -0.667 4.667 16 C -0.123 4.123 17 C -0.095 4.095 18 O -0.555 6.555 19 Si 0.761 3.239 20 S 0.178 5.822 21 C -0.202 4.202 22 C -0.092 4.092 23 C -0.133 4.133 24 C -0.104 4.104 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.127 0.873 44 H 0.401 0.599 45 H -0.238 1.238 46 H -0.259 1.259 47 H 0.206 0.794 48 H 0.173 0.827 49 H 0.043 0.957 50 H 0.078 0.922 51 H 0.092 0.908 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -2.219 -7.546 9.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.060 4.060 3 C -0.204 4.204 4 C -0.201 4.201 5 C -0.096 4.096 6 C -0.144 4.144 7 C -0.163 4.163 8 C 0.097 3.903 9 C -0.166 4.166 10 C -0.009 4.009 11 N -0.889 5.889 12 S 2.835 3.165 13 O -0.977 6.977 14 O -0.972 6.972 15 C -0.768 4.768 16 C -0.244 4.244 17 C -0.204 4.204 18 O -0.365 6.365 19 Si 0.658 3.342 20 S 0.441 5.559 21 C -0.337 4.337 22 C -0.119 4.119 23 C -0.172 4.172 24 C -0.142 4.142 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.144 0.856 44 H 0.253 0.747 45 H -0.163 1.163 46 H -0.184 1.184 47 H 0.223 0.777 48 H 0.190 0.810 49 H 0.062 0.938 50 H 0.096 0.904 51 H 0.110 0.890 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.402 -0.643 -5.279 8.323 hybrid contribution -1.389 0.152 -0.630 1.533 sum 5.013 -0.491 -5.910 7.765 Atomic orbital electron populations 1.21960 0.95045 1.02148 1.01199 1.20495 0.95157 0.95058 0.95325 1.21963 1.01472 0.95752 1.01197 1.21975 1.01613 1.00609 0.95876 1.21164 0.95527 0.95989 0.96959 1.21665 1.01037 0.94648 0.97047 1.21793 0.93359 1.02076 0.99055 1.21477 0.93649 0.91974 0.83160 1.23666 1.03067 0.93642 0.96190 1.22822 1.03721 0.89019 0.85360 1.60181 1.77211 1.23348 1.28131 1.00127 0.73324 0.72546 0.70514 1.93495 1.70834 1.53411 1.79914 1.93496 1.87082 1.44288 1.72312 1.29798 1.27274 1.18463 1.01302 1.25114 0.99429 1.00709 0.99124 1.25510 1.02001 0.94055 0.98791 1.86534 1.36363 1.23377 1.90195 0.93745 0.77137 0.87929 0.75365 1.84362 1.03691 1.57498 1.10339 1.26278 1.01547 1.05297 1.00595 1.19896 0.92474 1.01497 0.98076 1.21903 1.01063 0.94753 0.99450 1.21605 0.94816 1.00801 0.96935 0.93781 0.92774 0.91687 0.91856 0.92733 0.93819 0.91435 0.93200 0.91584 0.93416 0.88926 0.91114 0.89855 0.93903 0.86827 0.86875 0.88825 0.88895 0.85562 0.74738 1.16282 1.18365 0.77677 0.80975 0.93832 0.90371 0.88988 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.19 8.12 71.98 0.58 0.78 16 2 C -0.06 0.15 0.57 -52.18 -0.03 0.12 16 3 C -0.15 0.17 8.12 71.98 0.58 0.75 16 4 C -0.14 0.73 7.77 71.98 0.56 1.29 16 5 C -0.08 0.12 1.50 -10.81 -0.02 0.10 16 6 C -0.11 0.37 4.41 30.62 0.13 0.50 16 7 C -0.12 -0.02 5.26 30.58 0.16 0.14 16 8 C 0.18 -0.16 1.04 0.03 0.00 -0.16 16 9 C -0.13 1.06 7.17 30.94 0.22 1.28 16 10 C 0.11 -0.49 8.36 82.85 0.69 0.20 16 11 N -1.05 -2.99 3.28 -508.66 -1.67 -4.66 16 12 S 2.74 29.71 4.59 -56.49 -0.26 29.45 16 13 O -0.99 -17.89 16.70 -122.55 -2.05 -19.94 16 14 O -0.98 -15.19 16.93 -120.77 -2.05 -17.23 16 15 C -0.67 -3.86 5.72 21.22 0.12 -3.73 16 16 C -0.12 -0.62 5.77 24.59 0.14 -0.48 16 17 C -0.09 -0.57 2.36 71.24 0.17 -0.40 16 18 O -0.56 -5.18 9.69 -124.83 -1.21 -6.39 16 19 Si 0.76 -0.17 31.10 68.60 2.13 1.97 16 20 S 0.18 -0.13 20.87 -56.49 -1.18 -1.31 16 21 C -0.20 0.67 11.23 66.72 0.75 1.42 16 22 C -0.09 0.05 9.74 21.22 0.21 0.26 16 23 C -0.13 -0.08 5.30 30.59 0.16 0.08 16 24 C -0.10 0.31 4.41 30.62 0.14 0.45 16 25 H 0.04 0.03 8.14 -2.39 -0.02 0.01 16 26 H 0.05 -0.07 8.14 -2.39 -0.02 -0.08 16 27 H 0.06 -0.16 6.39 -2.39 -0.02 -0.18 16 28 H 0.06 -0.14 6.38 -2.39 -0.02 -0.15 16 29 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.04 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.07 -0.44 6.46 -2.39 -0.02 -0.46 16 32 H 0.05 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.07 -0.42 6.47 -2.39 -0.02 -0.43 16 34 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.09 -0.70 5.73 -2.38 -0.01 -0.71 16 36 H 0.07 -0.21 6.34 -2.39 -0.02 -0.22 16 37 H 0.08 -0.18 7.01 -2.39 -0.02 -0.19 16 38 H 0.04 0.27 8.14 -2.38 -0.02 0.25 16 39 H 0.11 -1.32 8.10 -2.39 -0.02 -1.34 16 40 H 0.11 -1.38 7.36 -2.39 -0.02 -1.40 16 41 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.09 -0.50 7.28 -2.39 -0.02 -0.52 16 43 H 0.13 1.04 7.96 -2.38 -0.02 1.03 16 44 H 0.40 0.73 8.50 -74.05 -0.63 0.10 16 45 H -0.24 -0.19 7.11 99.48 0.71 0.52 16 46 H -0.26 -1.30 7.11 99.48 0.71 -0.59 16 47 H 0.21 -2.06 8.06 -2.91 -0.02 -2.08 16 48 H 0.17 -1.04 7.75 -2.91 -0.02 -1.07 16 49 H 0.04 0.33 7.89 -2.39 -0.02 0.31 16 50 H 0.08 -0.12 8.13 -2.39 -0.02 -0.14 16 51 H 0.09 -0.64 6.32 -2.38 -0.02 -0.66 16 52 H 0.07 -0.14 6.33 -2.39 -0.02 -0.16 16 Total: 0.00 -23.11 407.81 -1.37 -24.48 By element: Atomic # 1 Polarization: -9.31 SS G_CDS: 0.33 Total: -8.97 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 4.58 Total: 2.61 kcal Atomic # 7 Polarization: -2.99 SS G_CDS: -1.67 Total: -4.66 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -5.30 Total: -43.56 kcal Atomic # 14 Polarization: -0.17 SS G_CDS: 2.13 Total: 1.97 kcal Atomic # 16 Polarization: 29.58 SS G_CDS: -1.44 Total: 28.14 kcal Total: -23.11 -1.37 -24.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761002_14772022.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.573 kcal (2) G-P(sol) polarization free energy of solvation -23.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds