Wall clock time and date at job start Mon Mar 8 2021 14:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47538 * 2 1 4 4 C 1.52995 * 109.47181 * 239.99551 * 2 1 3 5 5 C 1.53006 * 109.46883 * 119.99775 * 2 1 3 6 6 C 1.52975 * 109.43875 * 59.99933 * 5 2 1 7 7 C 1.53123 * 109.44869 * 178.30937 * 6 5 2 8 8 C 1.52846 * 109.22204 * 58.01090 * 7 6 5 9 9 C 1.53211 * 113.45760 * 172.75127 * 8 7 6 10 10 C 1.53549 * 83.26739 * 219.25344 * 9 8 7 11 11 N 1.46780 * 113.41089 * 73.97191 * 8 7 6 12 12 S 1.65602 * 136.09711 * 321.81753 * 11 8 7 13 13 O 1.42102 * 106.39934 * 192.35518 * 12 11 8 14 14 O 1.42091 * 106.40263 * 325.27263 * 12 11 8 15 15 C 1.76197 * 107.21693 * 78.81712 * 12 11 8 16 16 C 1.33379 * 122.54489 * 90.02735 * 15 12 11 17 17 S 1.75883 * 109.60021 * 179.97438 * 16 15 12 18 18 C 1.75894 * 90.96686 * 359.97438 * 17 16 15 19 19 C 1.50696 * 125.20138 * 180.02562 * 18 17 16 20 20 O 1.42902 * 109.47006 * 244.97229 * 19 18 17 21 21 Si 1.86295 * 109.47440 * 4.97381 * 19 18 17 22 22 C 1.33388 * 109.58924 * 359.72845 * 18 17 16 23 23 C 1.52852 * 112.68381 * 303.40788 * 8 7 6 24 24 C 1.52971 * 109.44137 * 299.78639 * 5 2 1 25 25 H 1.08998 * 109.47376 * 300.00726 * 1 2 3 26 26 H 1.09006 * 109.46652 * 60.00241 * 1 2 3 27 27 H 1.08993 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47528 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47157 * 300.00031 * 3 2 1 30 30 H 1.08998 * 109.47380 * 59.99276 * 3 2 1 31 31 H 1.09001 * 109.47016 * 300.00010 * 4 2 1 32 32 H 1.08998 * 109.47371 * 60.00250 * 4 2 1 33 33 H 1.09002 * 109.47451 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.40306 * 179.89320 * 5 2 1 35 35 H 1.08997 * 109.47700 * 58.31114 * 6 5 2 36 36 H 1.09006 * 109.47227 * 298.30676 * 6 5 2 37 37 H 1.09003 * 109.50983 * 177.93190 * 7 6 5 38 38 H 1.08995 * 109.50932 * 298.03692 * 7 6 5 39 39 H 1.08999 * 114.20999 * 332.81486 * 9 8 7 40 40 H 1.08992 * 114.21761 * 105.68115 * 9 8 7 41 41 H 1.09005 * 113.45446 * 271.03412 * 10 9 8 42 42 H 1.08997 * 113.45818 * 140.62657 * 10 9 8 43 43 H 1.08000 * 125.20212 * 0.02562 * 16 15 12 44 44 H 1.09002 * 109.47265 * 124.97723 * 19 18 17 45 45 H 0.96696 * 114.00363 * 180.02562 * 20 19 18 46 46 H 1.48509 * 109.99860 * 300.00038 * 21 19 18 47 47 H 1.48502 * 110.00224 * 61.31990 * 21 19 18 48 48 H 1.08008 * 122.53432 * 180.24336 * 22 18 17 49 49 H 1.08994 * 109.51270 * 176.51098 * 23 8 7 50 50 H 1.09000 * 109.51062 * 296.61490 * 23 8 7 51 51 H 1.08995 * 109.47195 * 61.69205 * 24 5 2 52 52 H 1.09003 * 109.48042 * 301.68404 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0399 -0.7212 1.2493 6 6 1.5296 -2.1633 1.2486 7 6 2.0743 -2.8975 2.4770 8 6 1.6378 -2.1567 3.7406 9 6 1.9803 -2.9029 5.0342 10 6 0.6040 -2.3897 5.4814 11 7 0.2175 -2.3396 4.0627 12 16 -1.1963 -2.4434 3.2068 13 8 -2.2486 -2.3319 4.1552 14 8 -1.0569 -1.5703 2.0944 15 6 -1.2895 -4.0756 2.5497 16 6 -1.8641 -5.0827 3.2089 17 16 -1.7674 -6.5505 2.2446 18 6 -0.9279 -5.6880 0.9620 19 6 -0.4560 -6.2999 -0.3318 20 8 0.9715 -6.2590 -0.3853 21 14 -1.0306 -8.0694 -0.4280 22 6 -0.7786 -4.4082 1.3069 23 6 2.0787 -0.6931 3.7479 24 6 1.5340 0.0036 2.4978 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 -1.7490 -1.2490 32 1 1.6767 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.1299 -0.7223 1.2473 35 1 1.8679 -2.6682 0.3438 36 1 0.4399 -2.1632 1.2788 37 1 1.6818 -3.9143 2.4972 38 1 3.1628 -2.9283 2.4297 39 1 2.0392 -3.9857 4.9233 40 1 2.8176 -2.4777 5.5874 41 1 0.6399 -1.4091 5.9562 42 1 0.0364 -3.1182 6.0604 43 1 -2.3198 -5.0082 4.1852 44 1 -0.8671 -5.7382 -1.1706 45 1 1.3458 -6.6367 -1.1928 46 1 -0.4766 -8.8458 0.7103 47 1 -2.5144 -8.1235 -0.4055 48 1 -0.2919 -3.6870 0.6669 49 1 1.6892 -0.2000 4.6384 50 1 3.1675 -0.6409 3.7494 51 1 0.4444 -0.0193 2.5147 52 1 1.8756 1.0386 2.4808 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761002_15065232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:07:58 Heat of formation + Delta-G solvation = -28.911218 kcal Electronic energy + Delta-G solvation = -35762.985885 eV Core-core repulsion = 31563.247835 eV Total energy + Delta-G solvation = -4199.738050 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.142 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.84164 -39.58630 -39.34953 -38.37800 -37.54572 -37.05605 -34.81096 -32.05754 -32.00392 -30.10602 -28.68008 -28.08173 -28.01189 -27.28566 -24.93427 -24.46506 -23.41358 -22.11315 -21.74403 -20.91502 -19.35585 -19.18025 -18.92856 -18.44856 -18.16244 -17.95695 -16.84462 -16.57591 -16.22704 -15.97369 -15.61112 -15.43272 -15.08855 -14.93758 -14.71573 -14.69123 -14.67522 -14.45161 -14.31911 -14.24409 -14.11210 -13.68105 -13.47877 -13.36454 -13.30167 -13.20634 -13.09875 -12.90248 -12.82347 -12.70264 -12.50772 -12.42594 -12.28395 -12.25658 -12.00485 -11.93276 -11.76520 -11.63720 -11.49972 -11.29308 -10.88112 -10.79687 -10.56096 -10.53893 -10.26697 -10.00635 -9.94124 -5.28508 -0.92710 -0.60661 0.20300 0.46201 0.88809 1.12138 1.50886 1.81002 1.93917 2.58442 2.95798 3.28686 3.45204 3.64652 3.71169 3.76528 3.82062 3.88945 3.95976 4.04356 4.07073 4.11558 4.34536 4.36621 4.43696 4.44625 4.49365 4.54870 4.60423 4.66133 4.70425 4.71734 4.75685 4.79843 4.87739 4.90302 4.94252 4.97847 5.02133 5.03778 5.06938 5.14620 5.18909 5.20270 5.23444 5.27032 5.30654 5.38278 5.44861 5.47267 5.58582 5.60209 5.72083 5.75029 5.89082 6.80887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.058 4.058 6 C -0.159 4.159 7 C -0.127 4.127 8 C 0.189 3.811 9 C -0.134 4.134 10 C 0.119 3.881 11 N -1.035 6.035 12 S 2.730 3.270 13 O -0.992 6.992 14 O -0.940 6.940 15 C -0.685 4.685 16 C -0.085 4.085 17 S 0.121 5.879 18 C -0.192 4.192 19 C -0.042 4.042 20 O -0.554 6.554 21 Si 0.753 3.247 22 C -0.049 4.049 23 C -0.116 4.116 24 C -0.131 4.131 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.197 0.803 44 H 0.106 0.894 45 H 0.406 0.594 46 H -0.274 1.274 47 H -0.273 1.273 48 H 0.165 0.835 49 H 0.075 0.925 50 H 0.095 0.905 51 H 0.065 0.935 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 -3.810 -1.401 7.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.064 4.064 3 C -0.200 4.200 4 C -0.198 4.198 5 C -0.077 4.077 6 C -0.196 4.196 7 C -0.165 4.165 8 C 0.103 3.897 9 C -0.173 4.173 10 C -0.005 4.005 11 N -0.876 5.876 12 S 2.822 3.178 13 O -0.983 6.983 14 O -0.930 6.930 15 C -0.785 4.785 16 C -0.223 4.223 17 S 0.384 5.616 18 C -0.309 4.309 19 C -0.154 4.154 20 O -0.365 6.365 21 Si 0.657 3.343 22 C -0.077 4.077 23 C -0.155 4.155 24 C -0.169 4.169 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.214 0.786 44 H 0.124 0.876 45 H 0.258 0.742 46 H -0.200 1.200 47 H -0.199 1.199 48 H 0.182 0.818 49 H 0.094 0.906 50 H 0.114 0.886 51 H 0.084 0.916 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.919 -5.067 -0.492 6.424 hybrid contribution 0.020 1.198 -0.184 1.213 sum 3.939 -3.868 -0.676 5.562 Atomic orbital electron populations 1.21881 0.94720 1.02344 1.00032 1.20533 0.95410 0.95217 0.95250 1.21925 1.00944 0.95690 1.01403 1.21907 1.00893 1.00305 0.96694 1.20943 0.99283 0.94075 0.93384 1.22432 1.04094 0.95406 0.97704 1.21887 1.02800 0.98354 0.93441 1.21441 0.76436 0.95926 0.95897 1.23551 0.97324 1.01289 0.95176 1.22737 0.94753 1.02466 0.80549 1.59969 1.20747 1.87610 1.19321 1.00619 0.71243 0.73267 0.72688 1.93528 1.54601 1.86743 1.63403 1.93526 1.85012 1.61917 1.52568 1.30092 1.16403 1.25106 1.06913 1.26088 0.97963 0.94860 1.03407 1.84510 1.54028 1.12563 1.10487 1.24055 1.08846 0.96881 1.01099 1.24119 0.86577 1.11173 0.93548 1.86454 1.16582 1.85990 1.47467 0.93862 0.78700 0.75042 0.86743 1.19855 0.97731 0.96147 0.93989 1.21783 1.02262 0.92788 0.98628 1.21846 1.01741 0.99167 0.94117 0.93209 0.94607 0.91882 0.92326 0.93333 0.92671 0.92404 0.93288 0.92418 0.91242 0.91601 0.88700 0.91871 0.88913 0.88533 0.87208 0.88353 0.89972 0.78642 0.87606 0.74168 1.19995 1.19932 0.81786 0.90594 0.88648 0.91620 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 6.78 71.98 0.49 -0.37 16 2 C -0.06 -0.17 0.57 -52.18 -0.03 -0.20 16 3 C -0.14 -0.30 8.12 71.98 0.58 0.29 16 4 C -0.14 -0.21 8.12 71.98 0.58 0.38 16 5 C -0.06 -0.06 1.50 -10.81 -0.02 -0.08 16 6 C -0.16 -0.20 3.23 30.63 0.10 -0.10 16 7 C -0.13 0.16 5.26 30.58 0.16 0.32 16 8 C 0.19 -0.45 0.93 -0.05 0.00 -0.45 16 9 C -0.13 0.84 7.61 30.85 0.23 1.08 16 10 C 0.12 -0.42 8.33 82.87 0.69 0.27 16 11 N -1.04 -1.07 3.86 -508.85 -1.97 -3.03 16 12 S 2.73 18.18 5.73 -56.49 -0.32 17.86 16 13 O -0.99 -12.96 17.61 -128.00 -2.25 -15.22 16 14 O -0.94 -7.99 9.71 -128.00 -1.24 -9.23 16 15 C -0.69 -3.76 5.89 21.21 0.12 -3.63 16 16 C -0.08 -0.36 10.70 66.72 0.71 0.35 16 17 S 0.12 0.54 20.60 -56.49 -1.16 -0.62 16 18 C -0.19 -0.81 5.73 24.59 0.14 -0.67 16 19 C -0.04 0.07 2.95 71.23 0.21 0.28 16 20 O -0.55 1.53 12.86 -148.98 -1.92 -0.38 16 21 Si 0.75 -2.16 30.98 68.60 2.13 -0.03 16 22 C -0.05 -0.24 8.58 21.22 0.18 -0.06 16 23 C -0.12 0.33 5.22 30.59 0.16 0.49 16 24 C -0.13 -0.19 4.44 30.63 0.14 -0.05 16 25 H 0.05 0.44 6.07 -2.39 -0.01 0.43 16 26 H 0.03 0.23 8.14 -2.38 -0.02 0.21 16 27 H 0.06 0.49 5.52 -2.39 -0.01 0.48 16 28 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.05 0.14 6.38 -2.39 -0.02 0.12 16 31 H 0.06 0.08 6.39 -2.39 -0.02 0.06 16 32 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.07 0.09 6.34 -2.39 -0.02 0.07 16 36 H 0.10 0.33 0.72 -2.70 0.00 0.33 16 37 H 0.06 0.04 7.60 -2.39 -0.02 0.02 16 38 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.10 -0.60 8.12 -2.39 -0.02 -0.62 16 40 H 0.11 -1.10 8.10 -2.39 -0.02 -1.11 16 41 H 0.10 -0.56 7.29 -2.38 -0.02 -0.58 16 42 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.20 0.12 8.00 -2.91 -0.02 0.10 16 44 H 0.11 -0.59 7.96 -2.39 -0.02 -0.61 16 45 H 0.41 -5.34 8.74 -74.06 -0.65 -5.99 16 46 H -0.27 -0.99 7.11 99.48 0.71 -0.28 16 47 H -0.27 -0.72 7.11 99.48 0.71 -0.01 16 48 H 0.16 0.64 5.44 -2.91 -0.02 0.63 16 49 H 0.08 -0.28 7.02 -2.39 -0.02 -0.30 16 50 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 51 H 0.07 0.37 4.35 -2.39 -0.01 0.36 16 52 H 0.07 0.07 6.33 -2.39 -0.02 0.05 16 Total: 0.00 -18.62 393.19 -1.94 -20.56 By element: Atomic # 1 Polarization: -8.09 SS G_CDS: 0.34 Total: -7.75 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.46 Total: -2.15 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -1.97 Total: -3.03 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -5.41 Total: -24.83 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: 2.13 Total: -0.03 kcal Atomic # 16 Polarization: 18.73 SS G_CDS: -1.49 Total: 17.24 kcal Total: -18.62 -1.94 -20.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761002_15065232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.355 kcal (2) G-P(sol) polarization free energy of solvation -18.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds