Wall clock time and date at job start Mon Mar 8 2021 14:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47471 * 2 1 4 4 C 1.52999 * 109.47315 * 239.99773 * 2 1 3 5 5 C 1.53000 * 109.46888 * 119.99950 * 2 1 3 6 6 C 1.52974 * 109.43682 * 60.00162 * 5 2 1 7 7 C 1.53122 * 109.44469 * 181.64188 * 6 5 2 8 8 C 1.52849 * 109.22343 * 301.98692 * 7 6 5 9 9 C 1.53479 * 113.40426 * 285.94750 * 8 7 6 10 10 C 1.53535 * 83.17390 * 271.19890 * 9 8 7 11 11 N 1.46745 * 113.46552 * 187.28757 * 8 7 6 12 12 S 1.65603 * 136.09269 * 267.96608 * 11 8 7 13 13 O 1.42101 * 106.40214 * 160.89387 * 12 11 8 14 14 O 1.42092 * 106.40532 * 27.97302 * 12 11 8 15 15 C 1.76205 * 107.21599 * 274.43002 * 12 11 8 16 16 C 1.38214 * 119.99896 * 165.70578 * 15 12 11 17 17 C 1.50701 * 119.99941 * 359.97438 * 16 15 12 18 18 O 1.42905 * 109.46921 * 74.87168 * 17 16 15 19 19 Si 1.86301 * 109.46808 * 194.87024 * 17 16 15 20 20 C 1.38256 * 119.99590 * 180.02562 * 16 15 12 21 21 C 1.38209 * 120.00333 * 359.86515 * 20 16 15 22 22 C 1.38254 * 120.00109 * 0.08869 * 21 20 16 23 23 C 1.38214 * 119.99738 * 0.02562 * 22 21 20 24 24 C 1.52845 * 112.67456 * 56.59890 * 8 7 6 25 25 C 1.52970 * 109.40030 * 180.19699 * 5 2 1 26 26 H 1.09001 * 109.47102 * 300.00427 * 1 2 3 27 27 H 1.09001 * 109.46731 * 59.99912 * 1 2 3 28 28 H 1.08994 * 109.47405 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47068 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47215 * 299.99792 * 3 2 1 31 31 H 1.09001 * 109.47306 * 59.99698 * 3 2 1 32 32 H 1.09006 * 109.46789 * 300.00430 * 4 2 1 33 33 H 1.09002 * 109.47095 * 59.99918 * 4 2 1 34 34 H 1.09003 * 109.47501 * 180.02562 * 4 2 1 35 35 H 1.08997 * 109.43652 * 300.08424 * 5 2 1 36 36 H 1.08994 * 109.48001 * 61.64379 * 6 5 2 37 37 H 1.09001 * 109.47458 * 301.63404 * 6 5 2 38 38 H 1.09001 * 109.51269 * 182.06304 * 7 6 5 39 39 H 1.08998 * 109.55574 * 61.94119 * 7 6 5 40 40 H 1.09000 * 114.41260 * 157.66133 * 9 8 7 41 41 H 1.09003 * 114.28619 * 24.72510 * 9 8 7 42 42 H 1.09006 * 113.46060 * 219.20492 * 10 9 8 43 43 H 1.09006 * 113.46162 * 88.80152 * 10 9 8 44 44 H 1.09004 * 109.46996 * 314.87276 * 17 16 15 45 45 H 0.96699 * 113.99980 * 60.00013 * 18 17 16 46 46 H 1.48498 * 109.99789 * 179.97438 * 19 17 16 47 47 H 1.48495 * 110.00336 * 301.31946 * 19 17 16 48 48 H 1.08001 * 119.99230 * 179.97438 * 20 16 15 49 49 H 1.07997 * 120.00338 * 180.37321 * 21 20 16 50 50 H 1.07999 * 120.00571 * 179.97438 * 22 21 20 51 51 H 1.08006 * 120.00292 * 179.97438 * 23 22 21 52 52 H 1.08997 * 109.51240 * 63.33189 * 24 8 7 53 53 H 1.09003 * 109.50926 * 183.48140 * 24 8 7 54 54 H 1.09005 * 109.47087 * 298.32922 * 25 5 2 55 55 H 1.08994 * 109.47960 * 58.33860 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5296 -2.1633 1.2484 7 6 2.0058 -2.8733 2.5188 8 6 3.5323 -2.8265 2.5793 9 6 4.2113 -3.7845 1.5909 10 6 4.0936 -4.7776 2.7560 11 7 4.0986 -3.6262 3.6717 12 16 4.5411 -3.3541 5.2442 13 8 4.5959 -4.6279 5.8717 14 8 3.7229 -2.2913 5.7132 15 6 6.1921 -2.7388 5.2224 16 6 6.7240 -2.1472 6.3526 17 6 5.8918 -2.0280 7.6033 18 8 5.7967 -3.3059 8.2358 19 14 6.6935 -0.8161 8.7693 20 6 8.0193 -1.6640 6.3353 21 6 8.7830 -1.7749 5.1888 22 6 8.2512 -2.3675 4.0585 23 6 6.9556 -2.8485 4.0751 24 6 4.0810 -1.4012 2.5205 25 6 3.5696 -0.7160 1.2502 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7217 -1.2490 35 1 1.6750 -0.2078 2.1388 36 1 1.9167 -2.6854 0.3735 37 1 0.4400 -2.1632 1.2189 38 1 1.6737 -3.9114 2.5020 39 1 1.5912 -2.3727 3.3938 40 1 5.2359 -3.5155 1.3345 41 1 3.6025 -4.0391 0.7233 42 1 4.9651 -5.4231 2.8657 43 1 3.1550 -5.3318 2.7608 44 1 4.8935 -1.6761 7.3433 45 1 6.6495 -3.6808 8.4952 46 1 5.8821 -0.6890 10.0065 47 1 8.0672 -1.2682 9.1064 48 1 8.4347 -1.2014 7.2183 49 1 9.7968 -1.4029 5.1771 50 1 8.8479 -2.4539 3.1624 51 1 6.5399 -3.3111 3.1920 52 1 3.7438 -0.8449 3.3951 53 1 5.1705 -1.4308 2.5047 54 1 3.9353 -1.2534 0.3751 55 1 3.9296 0.3123 1.2217 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761002_2726874.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:11 Heat of formation + Delta-G solvation = -44.844308 kcal Electronic energy + Delta-G solvation = -36319.105512 eV Core-core repulsion = 32029.524305 eV Total energy + Delta-G solvation = -4289.581207 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.185 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.92441 -40.76081 -39.41514 -38.40883 -38.03628 -37.04467 -34.98801 -32.95906 -32.54771 -32.00822 -29.69046 -29.07718 -28.11039 -28.05050 -27.08992 -24.51849 -24.41134 -23.64922 -22.90431 -22.51123 -21.11943 -19.72481 -19.20379 -19.03769 -18.28680 -17.85118 -17.35393 -17.09252 -16.79627 -16.51010 -16.22310 -16.00000 -15.82717 -15.49290 -15.17532 -15.11503 -15.00659 -14.74778 -14.63731 -14.36707 -14.28613 -14.02973 -13.88609 -13.69058 -13.43541 -13.36854 -13.28513 -13.23082 -13.16141 -13.02011 -12.66945 -12.63668 -12.52785 -12.49174 -12.38886 -12.09882 -12.03908 -11.98554 -11.77699 -11.63539 -11.49904 -11.27424 -11.03861 -10.90874 -10.86287 -10.75809 -10.47938 -10.13351 -10.06667 -5.07737 -0.86168 -0.33547 0.08092 1.06458 1.42250 1.74528 1.81535 2.33866 2.53329 3.03949 3.20726 3.31671 3.39784 3.58666 3.66403 3.74703 3.80452 3.89500 3.93448 4.00814 4.06026 4.12307 4.20057 4.30635 4.32708 4.35203 4.39648 4.42838 4.52865 4.54336 4.55982 4.62816 4.66359 4.73918 4.79725 4.81639 4.86686 4.91936 4.93324 4.97835 5.00263 5.02173 5.07405 5.12052 5.17037 5.18517 5.19796 5.23882 5.24635 5.26105 5.30753 5.33689 5.41470 5.43791 5.53951 5.63319 5.67532 5.72994 5.74902 6.25548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C -0.146 4.146 4 C -0.144 4.144 5 C -0.078 4.078 6 C -0.106 4.106 7 C -0.124 4.124 8 C 0.183 3.817 9 C -0.125 4.125 10 C 0.113 3.887 11 N -1.046 6.046 12 S 2.713 3.287 13 O -0.990 6.990 14 O -0.990 6.990 15 C -0.662 4.662 16 C -0.036 4.036 17 C -0.171 4.171 18 O -0.545 6.545 19 Si 0.803 3.197 20 C -0.143 4.143 21 C -0.057 4.057 22 C -0.128 4.128 23 C -0.035 4.035 24 C -0.135 4.135 25 C -0.104 4.104 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.390 0.610 46 H -0.295 1.295 47 H -0.246 1.246 48 H 0.156 0.844 49 H 0.170 0.830 50 H 0.169 0.831 51 H 0.157 0.843 52 H 0.047 0.953 53 H 0.082 0.918 54 H 0.091 0.909 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.221 2.748 -9.880 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.060 4.060 3 C -0.204 4.204 4 C -0.201 4.201 5 C -0.097 4.097 6 C -0.144 4.144 7 C -0.163 4.163 8 C 0.097 3.903 9 C -0.164 4.164 10 C -0.011 4.011 11 N -0.887 5.887 12 S 2.810 3.190 13 O -0.980 6.980 14 O -0.980 6.980 15 C -0.751 4.751 16 C -0.038 4.038 17 C -0.276 4.276 18 O -0.354 6.354 19 Si 0.702 3.298 20 C -0.161 4.161 21 C -0.075 4.075 22 C -0.146 4.146 23 C -0.054 4.054 24 C -0.173 4.173 25 C -0.141 4.141 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.137 0.863 45 H 0.240 0.760 46 H -0.223 1.223 47 H -0.171 1.171 48 H 0.173 0.827 49 H 0.187 0.813 50 H 0.187 0.813 51 H 0.175 0.825 52 H 0.066 0.934 53 H 0.101 0.899 54 H 0.110 0.890 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.488 2.811 -8.199 10.259 hybrid contribution 0.112 -0.993 0.844 1.308 sum 5.599 1.818 -7.355 9.421 Atomic orbital electron populations 1.21965 0.95222 1.02033 1.01202 1.20485 0.95018 0.95184 0.95286 1.21962 1.01599 0.95577 1.01218 1.21982 1.01708 1.00515 0.95929 1.21170 0.95707 0.95749 0.97042 1.21666 1.00987 0.94869 0.96887 1.21797 0.93365 1.01950 0.99234 1.21537 0.93725 0.92313 0.82696 1.23680 1.03293 0.93405 0.96040 1.22854 1.03596 0.89138 0.85545 1.60097 1.77377 1.23577 1.27668 1.00843 0.74405 0.72711 0.71015 1.93539 1.87817 1.42999 1.73650 1.93481 1.67609 1.58006 1.78934 1.30495 1.24873 1.17655 1.02113 1.19873 0.95769 0.94857 0.93267 1.26338 1.07540 0.94746 0.99015 1.86699 1.36261 1.33078 1.79358 0.93571 0.76461 0.84134 0.75621 1.21545 0.92689 1.00809 1.01064 1.21923 1.00882 0.93229 0.91433 1.21803 0.94935 0.97566 1.00318 1.21287 0.94576 0.94238 0.95274 1.21947 1.01335 0.94280 0.99765 1.21607 0.94629 1.01059 0.96828 0.93704 0.92855 0.91874 0.91626 0.92870 0.93672 0.91626 0.93282 0.91414 0.93156 0.89008 0.91258 0.90236 0.93707 0.86481 0.86662 0.89185 0.88993 0.86271 0.75969 1.22314 1.17131 0.82662 0.81266 0.81341 0.82526 0.93393 0.89900 0.89016 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.30 8.12 71.98 0.58 0.88 16 2 C -0.06 0.22 0.57 -52.18 -0.03 0.19 16 3 C -0.15 0.38 8.12 71.98 0.58 0.96 16 4 C -0.14 0.86 7.77 71.98 0.56 1.42 16 5 C -0.08 0.22 1.50 -10.81 -0.02 0.21 16 6 C -0.11 0.44 4.41 30.63 0.13 0.58 16 7 C -0.12 0.03 5.26 30.58 0.16 0.19 16 8 C 0.18 -0.30 1.04 0.02 0.00 -0.30 16 9 C -0.12 1.10 7.05 30.93 0.22 1.32 16 10 C 0.11 -0.39 8.29 82.85 0.69 0.29 16 11 N -1.05 -3.37 2.86 -508.77 -1.46 -4.82 16 12 S 2.71 33.53 5.19 -56.49 -0.29 33.24 16 13 O -0.99 -19.73 17.64 -127.23 -2.24 -21.97 16 14 O -0.99 -17.69 15.75 -128.00 -2.02 -19.71 16 15 C -0.66 -4.45 5.83 22.27 0.13 -4.32 16 16 C -0.04 -0.22 5.26 -19.87 -0.10 -0.32 16 17 C -0.17 -1.55 2.03 71.24 0.14 -1.41 16 18 O -0.55 -6.86 12.35 -148.98 -1.84 -8.70 16 19 Si 0.80 1.33 30.24 68.60 2.07 3.41 16 20 C -0.14 0.10 8.66 22.27 0.19 0.29 16 21 C -0.06 0.28 10.05 22.27 0.22 0.51 16 22 C -0.13 0.65 10.05 22.27 0.22 0.87 16 23 C -0.04 0.03 8.99 22.27 0.20 0.23 16 24 C -0.13 0.20 5.30 30.58 0.16 0.36 16 25 C -0.10 0.51 4.41 30.62 0.14 0.65 16 26 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.06 -0.18 6.39 -2.39 -0.02 -0.20 16 29 H 0.06 -0.26 6.38 -2.39 -0.02 -0.27 16 30 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.06 -0.46 6.46 -2.38 -0.02 -0.48 16 33 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.07 -0.51 6.46 -2.39 -0.02 -0.52 16 35 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.09 -0.74 5.73 -2.39 -0.01 -0.76 16 37 H 0.07 -0.23 6.34 -2.39 -0.02 -0.24 16 38 H 0.08 -0.15 7.01 -2.39 -0.02 -0.17 16 39 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.12 -1.49 7.68 -2.39 -0.02 -1.51 16 41 H 0.12 -1.46 7.36 -2.39 -0.02 -1.48 16 42 H 0.09 -0.50 8.14 -2.38 -0.02 -0.52 16 43 H 0.09 -0.40 7.28 -2.38 -0.02 -0.42 16 44 H 0.12 1.59 5.57 -2.38 -0.01 1.58 16 45 H 0.39 1.65 8.70 -74.06 -0.64 1.01 16 46 H -0.30 -2.68 7.11 99.48 0.71 -1.97 16 47 H -0.25 -0.05 6.69 99.48 0.67 0.61 16 48 H 0.16 -0.77 4.86 -2.91 -0.01 -0.78 16 49 H 0.17 -1.98 8.06 -2.91 -0.02 -2.00 16 50 H 0.17 -2.00 8.06 -2.91 -0.02 -2.02 16 51 H 0.16 -0.95 6.71 -2.91 -0.02 -0.97 16 52 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 53 H 0.08 -0.35 7.55 -2.39 -0.02 -0.37 16 54 H 0.09 -0.80 6.32 -2.38 -0.02 -0.82 16 55 H 0.07 -0.33 6.33 -2.39 -0.02 -0.35 16 Total: 0.00 -27.34 413.05 -1.34 -28.68 By element: Atomic # 1 Polarization: -12.97 SS G_CDS: 0.25 Total: -12.72 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 4.19 Total: 2.60 kcal Atomic # 7 Polarization: -3.37 SS G_CDS: -1.46 Total: -4.82 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -6.10 Total: -50.38 kcal Atomic # 14 Polarization: 1.33 SS G_CDS: 2.07 Total: 3.41 kcal Atomic # 16 Polarization: 33.53 SS G_CDS: -0.29 Total: 33.24 kcal Total: -27.34 -1.34 -28.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761002_2726874.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.166 kcal (2) G-P(sol) polarization free energy of solvation -27.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds