Wall clock time and date at job start Mon Mar 8 2021 14:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47315 * 268.91004 * 3 2 1 5 5 C 1.53009 * 109.46826 * 28.90335 * 3 2 1 6 6 C 1.52998 * 109.46760 * 60.00192 * 5 3 2 7 7 C 1.53005 * 109.47306 * 59.99781 * 6 5 3 8 8 H 1.09002 * 109.47191 * 60.00293 * 7 6 5 9 9 N 1.46508 * 109.47052 * 179.97438 * 7 6 5 10 10 S 1.65595 * 119.99876 * 264.99977 * 9 7 6 11 11 O 1.42105 * 106.40149 * 178.54167 * 10 9 7 12 12 O 1.42098 * 106.40317 * 311.46040 * 10 9 7 13 13 C 1.76204 * 107.21987 * 65.00402 * 10 9 7 14 14 C 1.38233 * 119.99533 * 269.72685 * 13 10 9 15 15 C 1.38242 * 119.99838 * 179.79085 * 14 13 10 16 16 C 1.38234 * 119.99530 * 0.45506 * 15 14 13 17 17 C 1.50697 * 119.99617 * 179.79279 * 16 15 14 18 18 O 1.42904 * 109.47322 * 119.97847 * 17 16 15 19 19 Si 1.86308 * 109.47481 * 359.97438 * 17 16 15 20 20 C 1.38230 * 120.00331 * 359.77609 * 16 15 14 21 21 C 1.38226 * 120.00179 * 89.99674 * 13 10 9 22 22 C 1.52999 * 109.47016 * 299.99755 * 7 6 5 23 23 C 1.52993 * 109.47203 * 148.90260 * 3 2 1 24 24 H 4.18740 * 15.03903 * 359.97438 * 4 2 1 25 25 H 1.08998 * 109.46857 * 179.97438 * 5 3 2 26 26 H 1.08996 * 109.47294 * 300.00308 * 5 3 2 27 27 H 1.08996 * 109.47600 * 299.99676 * 6 5 3 28 28 H 1.09005 * 109.47187 * 179.97438 * 6 5 3 29 29 H 0.96997 * 120.00091 * 84.99949 * 9 7 6 30 30 H 1.08001 * 120.00579 * 359.97438 * 14 13 10 31 31 H 1.07996 * 119.99669 * 180.25053 * 15 14 13 32 32 H 1.08996 * 109.47413 * 239.98367 * 17 16 15 33 33 H 0.96695 * 113.99675 * 300.00481 * 18 17 16 34 34 H 1.48495 * 110.00175 * 180.02562 * 19 17 16 35 35 H 1.48500 * 109.99752 * 301.32109 * 19 17 16 36 36 H 1.07994 * 120.00248 * 179.97438 * 20 16 15 37 37 H 1.07994 * 120.00174 * 359.97438 * 21 13 10 38 38 H 1.08998 * 109.46781 * 180.02562 * 22 7 6 39 39 H 1.09003 * 109.46918 * 299.99947 * 22 7 6 40 40 H 1.08998 * 109.47532 * 180.02562 * 23 3 2 41 41 H 1.09003 * 109.47167 * 60.00073 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.0204 1.0274 5 6 3.1565 -1.2620 -0.6973 6 6 2.6465 -1.2897 -2.1395 7 6 3.1560 -0.0542 -2.8845 8 1 4.2460 -0.0538 -2.8846 9 7 2.6680 -0.0811 -4.2657 10 16 3.6182 -0.7099 -5.4673 11 8 2.8592 -0.6237 -6.6656 12 8 4.9011 -0.1177 -5.3157 13 6 3.8196 -2.4272 -5.1283 14 6 4.8799 -2.8590 -4.3535 15 6 5.0355 -4.2059 -4.0839 16 6 4.1362 -5.1218 -4.5971 17 6 4.3085 -6.5905 -4.3071 18 8 3.1535 -7.0796 -3.6222 19 14 5.8153 -6.8405 -3.2402 20 6 3.0787 -4.6905 -5.3758 21 6 2.9207 -3.3431 -5.6418 22 6 2.6454 1.2083 -2.1872 23 6 3.1554 1.2360 -0.7450 24 1 -1.0500 0.0005 0.0000 25 1 4.2465 -1.2613 -0.6977 26 1 2.7935 -2.1421 -0.1666 27 1 1.5565 -1.2902 -2.1395 28 1 3.0105 -2.1890 -2.6364 29 1 1.7884 0.2693 -4.4762 30 1 5.5850 -2.1439 -3.9563 31 1 5.8615 -4.5428 -3.4752 32 1 4.4326 -7.1338 -5.2438 33 1 2.9814 -6.6403 -2.7782 34 1 5.9966 -8.2850 -2.9477 35 1 7.0185 -6.3071 -3.9279 36 1 2.3764 -5.4060 -5.7770 37 1 2.0947 -3.0062 -6.2504 38 1 3.0080 2.0884 -2.7182 39 1 1.5554 1.2078 -2.1872 40 1 4.2454 1.2363 -0.7454 41 1 2.7917 2.1356 -0.2483 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17761048_13421422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:19 Heat of formation + Delta-G solvation = -29.412156 kcal Electronic energy + Delta-G solvation = -25776.870527 eV Core-core repulsion = 22137.420463 eV Total energy + Delta-G solvation = -3639.450064 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.107 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.81722 -40.36258 -38.23774 -37.82098 -36.86203 -36.07026 -33.11115 -32.95202 -32.30597 -31.92316 -29.85679 -27.31202 -24.20928 -23.95019 -23.82579 -23.03825 -21.85697 -20.62220 -19.33360 -18.78864 -18.30916 -18.03939 -17.64380 -16.96910 -16.57726 -16.36170 -16.10345 -15.90960 -15.59487 -15.50537 -15.42792 -14.89733 -14.51753 -14.36866 -14.25951 -14.07003 -13.91899 -13.33856 -13.19408 -13.10549 -13.07270 -12.96374 -12.71698 -12.45586 -12.30664 -12.21900 -12.08897 -11.99004 -11.79010 -11.53753 -11.08539 -10.95598 -10.78248 -10.51776 -10.35815 -10.21082 -5.20116 -0.72265 -0.39913 0.11105 1.09287 1.48377 1.82982 1.85449 1.91459 1.94720 2.28370 2.73094 3.21041 3.24073 3.30977 3.37949 3.52269 3.62720 3.68607 3.73100 3.81461 3.97843 4.05023 4.07875 4.15541 4.25251 4.28039 4.34002 4.37353 4.43490 4.51109 4.64975 4.69934 4.73407 4.86607 4.90399 4.92969 4.96198 5.03533 5.05448 5.16001 5.16579 5.19098 5.31760 5.61317 5.85694 6.35484 6.71834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C 0.017 3.983 4 H 0.096 0.904 5 C -0.109 4.109 6 C -0.143 4.143 7 C 0.149 3.851 8 H 0.095 0.905 9 N -1.111 6.111 10 S 2.693 3.307 11 O -0.956 6.956 12 O -0.953 6.953 13 C -0.673 4.673 14 C -0.015 4.015 15 C -0.139 4.139 16 C -0.063 4.063 17 C -0.078 4.078 18 O -0.535 6.535 19 Si 0.691 3.309 20 C -0.113 4.113 21 C -0.015 4.015 22 C -0.124 4.124 23 C -0.111 4.111 24 H 0.214 0.786 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.420 0.580 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.380 0.620 34 H -0.251 1.251 35 H -0.255 1.255 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 -0.148 6.182 6.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.001 4.001 4 H 0.114 0.886 5 C -0.147 4.147 6 C -0.183 4.183 7 C 0.042 3.958 8 H 0.113 0.887 9 N -0.870 5.870 10 S 2.782 3.218 11 O -0.946 6.946 12 O -0.943 6.943 13 C -0.760 4.760 14 C -0.034 4.034 15 C -0.157 4.157 16 C -0.063 4.063 17 C -0.188 4.188 18 O -0.340 6.340 19 Si 0.592 3.408 20 C -0.132 4.132 21 C -0.035 4.035 22 C -0.163 4.163 23 C -0.149 4.149 24 H 0.231 0.769 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.255 0.745 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.137 0.863 33 H 0.228 0.772 34 H -0.176 1.176 35 H -0.180 1.180 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.553 -0.534 5.041 5.100 hybrid contribution -1.081 -0.551 -0.355 1.264 sum -0.527 -1.085 4.686 4.839 Atomic orbital electron populations 1.24936 0.95972 1.00532 1.01312 1.22885 0.94135 1.00513 0.99999 1.18420 0.84940 0.96089 1.00698 0.88645 1.21538 1.01157 0.97086 0.94963 1.22172 1.02534 0.97862 0.95690 1.20932 0.99162 0.96038 0.79684 0.88715 1.55606 1.33171 1.77307 1.20918 1.01954 0.73618 0.73634 0.72581 1.93619 1.71560 1.86529 1.42927 1.93609 1.39984 1.74771 1.85895 1.31001 1.05764 1.25951 1.13276 1.20894 0.93909 0.96465 0.92129 1.21155 0.99689 0.93313 1.01546 1.20732 0.94516 0.96150 0.94941 1.25230 0.99429 0.91446 1.02726 1.86539 1.46005 1.63313 1.38184 0.94732 0.75617 0.82869 0.87594 1.21176 0.98065 0.95785 0.98195 1.20986 0.95989 0.92875 0.93616 1.21812 1.01925 0.97003 0.95561 1.21559 1.01323 0.97346 0.94643 0.76867 0.90369 0.90830 0.90692 0.91071 0.74519 0.83749 0.84579 0.86272 0.77232 1.17593 1.17967 0.84537 0.83962 0.90619 0.90856 0.90253 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 0.12 19.25 29.55 0.57 0.68 16 2 C -0.18 0.09 10.06 -37.12 -0.37 -0.28 16 3 C 0.02 -0.04 3.07 -93.41 -0.29 -0.33 16 4 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 5 C -0.11 0.38 5.43 -26.73 -0.15 0.23 16 6 C -0.14 0.40 5.30 -26.73 -0.14 0.26 16 7 C 0.15 -0.33 2.79 -67.92 -0.19 -0.52 16 8 H 0.09 -0.25 7.50 -51.93 -0.39 -0.63 16 9 N -1.11 1.81 5.47 -4.88 -0.03 1.78 16 10 S 2.69 3.06 5.72 -107.50 -0.61 2.45 16 11 O -0.96 -4.01 17.28 -57.17 -0.99 -5.00 16 12 O -0.95 -3.58 16.61 -57.17 -0.95 -4.53 16 13 C -0.67 -0.06 5.06 -39.59 -0.20 -0.26 16 14 C -0.01 0.01 8.60 -39.58 -0.34 -0.33 16 15 C -0.14 0.22 8.67 -39.58 -0.34 -0.13 16 16 C -0.06 0.06 5.39 -104.63 -0.56 -0.50 16 17 C -0.08 0.11 2.82 36.00 0.10 0.21 16 18 O -0.54 0.59 12.77 -35.23 -0.45 0.14 16 19 Si 0.69 -1.50 29.79 -169.99 -5.06 -6.57 16 20 C -0.11 0.04 9.61 -39.58 -0.38 -0.34 16 21 C -0.02 0.00 9.52 -39.59 -0.38 -0.38 16 22 C -0.12 0.28 5.23 -26.73 -0.14 0.14 16 23 C -0.11 0.32 5.43 -26.74 -0.15 0.17 16 24 H 0.21 -0.62 7.80 -54.09 -0.42 -1.04 16 25 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 26 H 0.07 -0.25 8.14 -51.93 -0.42 -0.68 16 27 H 0.07 -0.13 7.23 -51.93 -0.38 -0.51 16 28 H 0.07 -0.22 6.18 -51.93 -0.32 -0.54 16 29 H 0.42 -1.27 8.84 -34.47 -0.30 -1.57 16 30 H 0.14 -0.34 7.61 -52.49 -0.40 -0.74 16 31 H 0.14 -0.50 4.88 -52.49 -0.26 -0.75 16 32 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 33 H 0.38 -1.90 8.70 45.56 0.40 -1.50 16 34 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 35 H -0.25 -0.06 7.11 56.52 0.40 0.35 16 36 H 0.14 -0.15 8.06 -52.49 -0.42 -0.57 16 37 H 0.14 -0.13 7.62 -52.49 -0.40 -0.53 16 38 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 39 H 0.07 -0.13 7.23 -51.93 -0.38 -0.51 16 40 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 41 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 LS Contribution 346.54 15.07 5.22 5.22 Total: 0.00 -9.76 346.54 -11.24 -21.00 By element: Atomic # 1 Polarization: -7.71 SS G_CDS: -5.42 Total: -13.13 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.96 Total: -1.37 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -0.03 Total: 1.78 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -2.39 Total: -9.39 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: -5.06 Total: -6.57 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -0.61 Total: 2.45 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -9.76 -11.24 -21.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_13421422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.407 kcal (2) G-P(sol) polarization free energy of solvation -9.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds