Wall clock time and date at job start Mon Mar 8 2021 14:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47315 * 268.91004 * 3 2 1 5 5 C 1.53009 * 109.46826 * 28.90335 * 3 2 1 6 6 C 1.52998 * 109.46760 * 60.00192 * 5 3 2 7 7 C 1.53005 * 109.47306 * 59.99781 * 6 5 3 8 8 H 1.09002 * 109.47191 * 60.00293 * 7 6 5 9 9 N 1.46508 * 109.47052 * 179.97438 * 7 6 5 10 10 S 1.65595 * 119.99876 * 264.99977 * 9 7 6 11 11 O 1.42105 * 106.40149 * 178.54167 * 10 9 7 12 12 O 1.42098 * 106.40317 * 311.46040 * 10 9 7 13 13 C 1.76204 * 107.21987 * 65.00402 * 10 9 7 14 14 C 1.38233 * 119.99533 * 269.72685 * 13 10 9 15 15 C 1.38242 * 119.99838 * 179.79085 * 14 13 10 16 16 C 1.38234 * 119.99530 * 0.45506 * 15 14 13 17 17 C 1.50697 * 119.99617 * 179.79279 * 16 15 14 18 18 O 1.42904 * 109.47322 * 119.97847 * 17 16 15 19 19 Si 1.86308 * 109.47481 * 359.97438 * 17 16 15 20 20 C 1.38230 * 120.00331 * 359.77609 * 16 15 14 21 21 C 1.38226 * 120.00179 * 89.99674 * 13 10 9 22 22 C 1.52999 * 109.47016 * 299.99755 * 7 6 5 23 23 C 1.52993 * 109.47203 * 148.90260 * 3 2 1 24 24 H 4.18740 * 15.03903 * 359.97438 * 4 2 1 25 25 H 1.08998 * 109.46857 * 179.97438 * 5 3 2 26 26 H 1.08996 * 109.47294 * 300.00308 * 5 3 2 27 27 H 1.08996 * 109.47600 * 299.99676 * 6 5 3 28 28 H 1.09005 * 109.47187 * 179.97438 * 6 5 3 29 29 H 0.96997 * 120.00091 * 84.99949 * 9 7 6 30 30 H 1.08001 * 120.00579 * 359.97438 * 14 13 10 31 31 H 1.07996 * 119.99669 * 180.25053 * 15 14 13 32 32 H 1.08996 * 109.47413 * 239.98367 * 17 16 15 33 33 H 0.96695 * 113.99675 * 300.00481 * 18 17 16 34 34 H 1.48495 * 110.00175 * 180.02562 * 19 17 16 35 35 H 1.48500 * 109.99752 * 301.32109 * 19 17 16 36 36 H 1.07994 * 120.00248 * 179.97438 * 20 16 15 37 37 H 1.07994 * 120.00174 * 359.97438 * 21 13 10 38 38 H 1.08998 * 109.46781 * 180.02562 * 22 7 6 39 39 H 1.09003 * 109.46918 * 299.99947 * 22 7 6 40 40 H 1.08998 * 109.47532 * 180.02562 * 23 3 2 41 41 H 1.09003 * 109.47167 * 60.00073 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.0204 1.0274 5 6 3.1565 -1.2620 -0.6973 6 6 2.6465 -1.2897 -2.1395 7 6 3.1560 -0.0542 -2.8845 8 1 4.2460 -0.0538 -2.8846 9 7 2.6680 -0.0811 -4.2657 10 16 3.6182 -0.7099 -5.4673 11 8 2.8592 -0.6237 -6.6656 12 8 4.9011 -0.1177 -5.3157 13 6 3.8196 -2.4272 -5.1283 14 6 4.8799 -2.8590 -4.3535 15 6 5.0355 -4.2059 -4.0839 16 6 4.1362 -5.1218 -4.5971 17 6 4.3085 -6.5905 -4.3071 18 8 3.1535 -7.0796 -3.6222 19 14 5.8153 -6.8405 -3.2402 20 6 3.0787 -4.6905 -5.3758 21 6 2.9207 -3.3431 -5.6418 22 6 2.6454 1.2083 -2.1872 23 6 3.1554 1.2360 -0.7450 24 1 -1.0500 0.0005 0.0000 25 1 4.2465 -1.2613 -0.6977 26 1 2.7935 -2.1421 -0.1666 27 1 1.5565 -1.2902 -2.1395 28 1 3.0105 -2.1890 -2.6364 29 1 1.7884 0.2693 -4.4762 30 1 5.5850 -2.1439 -3.9563 31 1 5.8615 -4.5428 -3.4752 32 1 4.4326 -7.1338 -5.2438 33 1 2.9814 -6.6403 -2.7782 34 1 5.9966 -8.2850 -2.9477 35 1 7.0185 -6.3071 -3.9279 36 1 2.3764 -5.4060 -5.7770 37 1 2.0947 -3.0062 -6.2504 38 1 3.0080 2.0884 -2.7182 39 1 1.5554 1.2078 -2.1872 40 1 4.2454 1.2363 -0.7454 41 1 2.7917 2.1356 -0.2483 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761048_13421422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:18 Heat of formation + Delta-G solvation = -30.529200 kcal Electronic energy + Delta-G solvation = -25776.918966 eV Core-core repulsion = 22137.420463 eV Total energy + Delta-G solvation = -3639.498503 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.107 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72721 -40.16885 -38.42816 -37.70999 -37.06248 -35.94197 -33.03875 -32.83506 -32.21760 -31.69237 -29.69935 -27.23387 -24.11817 -23.77015 -23.59832 -22.96953 -21.66987 -20.63954 -19.29998 -18.76134 -18.21919 -17.97425 -17.56967 -16.87662 -16.51893 -16.24470 -15.98062 -15.83447 -15.50194 -15.37340 -15.25056 -14.80324 -14.48632 -14.24527 -14.12338 -13.99173 -13.87514 -13.35205 -13.28232 -13.15339 -13.05859 -12.83186 -12.65528 -12.43257 -12.08723 -12.07338 -11.99130 -11.90191 -11.70423 -11.36409 -10.94678 -10.80835 -10.67523 -10.38223 -10.26831 -10.13417 -5.04844 -0.75912 -0.38471 0.19044 1.23076 1.60260 1.87287 1.94239 2.00981 2.04021 2.32713 2.68624 3.18783 3.40275 3.50074 3.51367 3.70987 3.76274 3.83241 3.87622 4.01570 4.19362 4.21404 4.26128 4.32133 4.36567 4.38650 4.56249 4.58604 4.61257 4.65266 4.83933 4.86938 4.94215 4.96460 4.98500 5.17951 5.20039 5.24752 5.25824 5.28553 5.36140 5.42654 5.53860 5.69530 6.00589 6.69173 6.82520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.186 4.186 3 C 0.013 3.987 4 H 0.105 0.895 5 C -0.108 4.108 6 C -0.140 4.140 7 C 0.145 3.855 8 H 0.103 0.897 9 N -1.103 6.103 10 S 2.707 3.293 11 O -0.993 6.993 12 O -0.981 6.981 13 C -0.676 4.676 14 C -0.019 4.019 15 C -0.137 4.137 16 C -0.063 4.063 17 C -0.083 4.083 18 O -0.550 6.550 19 Si 0.782 3.218 20 C -0.122 4.122 21 C -0.026 4.026 22 C -0.124 4.124 23 C -0.109 4.109 24 H 0.227 0.773 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.426 0.574 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.112 0.888 33 H 0.397 0.603 34 H -0.299 1.299 35 H -0.282 1.282 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -0.411 7.338 7.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.186 4.186 3 C -0.005 4.005 4 H 0.123 0.877 5 C -0.146 4.146 6 C -0.179 4.179 7 C 0.039 3.961 8 H 0.120 0.880 9 N -0.864 5.864 10 S 2.799 3.201 11 O -0.983 6.983 12 O -0.971 6.971 13 C -0.764 4.764 14 C -0.038 4.038 15 C -0.155 4.155 16 C -0.063 4.063 17 C -0.193 4.193 18 O -0.359 6.359 19 Si 0.687 3.313 20 C -0.141 4.141 21 C -0.046 4.046 22 C -0.163 4.163 23 C -0.147 4.147 24 H 0.244 0.756 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.262 0.738 30 H 0.178 0.822 31 H 0.177 0.823 32 H 0.130 0.870 33 H 0.247 0.753 34 H -0.227 1.227 35 H -0.209 1.209 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.223 -0.749 6.199 6.363 hybrid contribution -1.325 -0.531 -0.691 1.586 sum -0.102 -1.280 5.508 5.656 Atomic orbital electron populations 1.25505 0.96890 1.00884 1.01685 1.23491 0.95069 1.00277 0.99751 1.18573 0.83803 0.96670 1.01432 0.87698 1.21568 1.02344 0.96602 0.94040 1.22139 1.01796 0.97688 0.96326 1.21088 0.99649 0.96407 0.78993 0.87953 1.55379 1.33154 1.77053 1.20779 1.01208 0.72853 0.73878 0.72193 1.93565 1.72188 1.87261 1.45277 1.93567 1.41401 1.75777 1.86332 1.30775 1.06598 1.24829 1.14225 1.21161 0.93697 0.97222 0.91728 1.21390 0.99929 0.92867 1.01319 1.20835 0.94361 0.96479 0.94645 1.25357 1.00004 0.91039 1.02872 1.86505 1.46078 1.63848 1.39421 0.93719 0.72969 0.79189 0.85403 1.21281 0.98581 0.95653 0.98557 1.21082 0.96310 0.93181 0.93978 1.21806 1.01461 0.96886 0.96147 1.21569 1.02205 0.97088 0.93847 0.75591 0.88365 0.90636 0.91903 0.90531 0.73776 0.82153 0.82339 0.87019 0.75266 1.22741 1.20918 0.84246 0.83828 0.90849 0.91668 0.88726 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 0.14 19.25 74.32 1.43 1.57 16 2 C -0.19 0.18 10.06 31.12 0.31 0.49 16 3 C 0.01 -0.08 3.07 -12.60 -0.04 -0.12 16 4 H 0.11 -0.81 8.14 -2.39 -0.02 -0.82 16 5 C -0.11 0.89 5.43 30.60 0.17 1.05 16 6 C -0.14 0.85 5.30 30.60 0.16 1.02 16 7 C 0.14 -0.69 2.79 44.99 0.13 -0.57 16 8 H 0.10 -0.63 7.50 -2.39 -0.02 -0.64 16 9 N -1.10 3.03 5.47 -169.37 -0.93 2.10 16 10 S 2.71 8.16 5.72 -56.49 -0.32 7.84 16 11 O -0.99 -9.78 17.28 -128.00 -2.21 -11.99 16 12 O -0.98 -7.81 16.61 -128.00 -2.13 -9.93 16 13 C -0.68 -0.17 5.06 22.27 0.11 -0.06 16 14 C -0.02 0.05 8.60 22.27 0.19 0.24 16 15 C -0.14 0.62 8.67 22.27 0.19 0.81 16 16 C -0.06 0.17 5.39 -19.87 -0.11 0.06 16 17 C -0.08 0.29 2.82 71.24 0.20 0.49 16 18 O -0.55 1.58 12.77 -148.98 -1.90 -0.32 16 19 Si 0.78 -4.03 29.79 68.60 2.04 -1.99 16 20 C -0.12 0.08 9.61 22.27 0.21 0.30 16 21 C -0.03 -0.01 9.52 22.27 0.21 0.20 16 22 C -0.12 0.56 5.23 30.59 0.16 0.72 16 23 C -0.11 0.70 5.43 30.59 0.17 0.87 16 24 H 0.23 -1.18 7.80 -4.42 -0.03 -1.22 16 25 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 26 H 0.07 -0.62 8.14 -2.39 -0.02 -0.64 16 27 H 0.06 -0.21 7.23 -2.39 -0.02 -0.23 16 28 H 0.08 -0.54 6.18 -2.38 -0.01 -0.56 16 29 H 0.43 -2.18 8.84 -96.75 -0.86 -3.03 16 30 H 0.16 -1.00 7.61 -2.91 -0.02 -1.03 16 31 H 0.16 -1.51 4.88 -2.91 -0.01 -1.52 16 32 H 0.11 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.40 -4.44 8.70 -74.06 -0.64 -5.08 16 34 H -0.30 -0.89 7.11 99.48 0.71 -0.18 16 35 H -0.28 0.14 7.11 99.48 0.71 0.85 16 36 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 37 H 0.14 -0.08 7.62 -2.91 -0.02 -0.11 16 38 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.06 -0.19 7.23 -2.39 -0.02 -0.21 16 40 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 Total: 0.00 -22.62 346.54 -2.35 -24.97 By element: Atomic # 1 Polarization: -17.34 SS G_CDS: -0.40 Total: -17.75 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 3.50 Total: 7.07 kcal Atomic # 7 Polarization: 3.03 SS G_CDS: -0.93 Total: 2.10 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -6.24 Total: -22.24 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.04 Total: -1.99 kcal Atomic # 16 Polarization: 8.16 SS G_CDS: -0.32 Total: 7.84 kcal Total: -22.62 -2.35 -24.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_13421422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.562 kcal (2) G-P(sol) polarization free energy of solvation -22.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds