Wall clock time and date at job start Mon Mar 8 2021 14:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09004 * 109.46636 * 198.47310 * 3 2 1 5 5 C 1.52996 * 109.47606 * 318.47610 * 3 2 1 6 6 C 1.53002 * 109.46891 * 59.99957 * 5 3 2 7 7 C 1.52997 * 109.46978 * 60.00410 * 6 5 3 8 8 H 1.09001 * 109.47375 * 59.99908 * 7 6 5 9 9 N 1.46504 * 109.47417 * 179.97438 * 7 6 5 10 10 S 1.65592 * 120.00236 * 215.00293 * 9 7 6 11 11 O 1.42098 * 106.40713 * 178.53851 * 10 9 7 12 12 O 1.42105 * 106.40264 * 311.45463 * 10 9 7 13 13 C 1.76196 * 107.22072 * 64.99358 * 10 9 7 14 14 C 1.33391 * 125.20425 * 90.00517 * 13 10 9 15 15 C 1.50698 * 122.53786 * 359.95179 * 14 13 10 16 16 O 1.42902 * 109.47492 * 285.00595 * 15 14 13 17 17 Si 1.86301 * 109.47022 * 165.00477 * 15 14 13 18 18 C 1.38428 * 114.92265 * 179.97438 * 14 13 10 19 19 C 1.33387 * 114.91698 * 359.97438 * 18 14 13 20 20 S 1.75878 * 109.59827 * 359.76316 * 19 18 14 21 21 C 1.53006 * 109.47164 * 299.99874 * 7 6 5 22 22 C 1.52997 * 109.47127 * 59.99836 * 21 7 6 23 23 H 4.18737 * 15.03833 * 359.97438 * 4 2 1 24 24 H 1.08992 * 109.47554 * 179.97438 * 5 3 2 25 25 H 1.09004 * 109.47108 * 300.00249 * 5 3 2 26 26 H 1.09002 * 109.47097 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47142 * 300.00176 * 6 5 3 28 28 H 0.97000 * 119.99461 * 34.99435 * 9 7 6 29 29 H 1.09000 * 109.47246 * 45.00261 * 15 14 13 30 30 H 0.96701 * 113.99581 * 300.00324 * 16 15 14 31 31 H 1.48496 * 110.00256 * 58.68381 * 17 15 14 32 32 H 1.48506 * 109.99672 * 180.02562 * 17 15 14 33 33 H 1.07997 * 122.53594 * 179.97438 * 18 14 13 34 34 H 1.07999 * 125.19638 * 179.97438 * 19 18 14 35 35 H 1.08998 * 109.46505 * 299.99708 * 21 7 6 36 36 H 1.08996 * 109.46884 * 180.02562 * 21 7 6 37 37 H 1.09002 * 109.47153 * 180.02562 * 22 21 7 38 38 H 1.09001 * 109.46832 * 60.00321 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9756 0.3256 5 6 3.1566 -1.0790 0.9562 6 6 2.6473 -2.4474 0.4991 7 6 3.1574 -2.7353 -0.9143 8 1 4.2474 -2.7348 -0.9144 9 7 2.6702 -4.0458 -1.3519 10 16 3.6204 -5.0044 -2.3113 11 8 2.8899 -6.2034 -2.5297 12 8 4.0888 -4.1765 -3.3671 13 6 5.0369 -5.4504 -1.3631 14 6 5.1324 -6.5290 -0.5841 15 6 4.0041 -7.5150 -0.4232 16 8 2.9947 -6.9511 0.4165 17 14 4.6531 -9.0802 0.3513 18 6 6.3461 -6.6737 0.0656 19 6 7.2364 -5.7129 -0.1862 20 16 6.5445 -4.5462 -1.3057 21 6 2.6469 -1.6555 -1.8706 22 6 3.1562 -0.2872 -1.4135 23 1 -1.0500 -0.0009 -0.0008 24 1 4.2466 -1.0788 0.9559 25 1 2.7932 -0.8739 1.9632 26 1 3.0106 -3.2166 1.1806 27 1 1.5572 -2.4479 0.4991 28 1 1.7911 -4.3521 -1.0795 29 1 3.5783 -7.7426 -1.4004 30 1 3.3035 -6.7234 1.3041 31 1 5.2648 -8.7785 1.6703 32 1 3.5501 -10.0611 0.5148 33 1 6.5561 -7.5018 0.7263 34 1 8.2313 -5.6614 0.2308 35 1 1.5569 -1.6562 -1.8706 36 1 3.0100 -1.8609 -2.8776 37 1 2.7921 0.4821 -2.0945 38 1 4.2462 -0.2866 -1.4135 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17761048_13652106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:23 Heat of formation + Delta-G solvation = -16.350611 kcal Electronic energy + Delta-G solvation = -24747.572847 eV Core-core repulsion = 21197.841420 eV Total energy + Delta-G solvation = -3549.731427 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.33723 -40.15223 -38.08611 -37.18495 -36.80825 -36.00386 -32.89747 -31.89608 -31.48819 -29.79410 -27.98634 -24.37916 -23.92466 -23.75357 -21.96937 -21.40008 -20.04707 -19.49822 -18.68896 -18.46283 -17.98107 -17.48837 -16.59976 -16.42473 -16.33500 -15.92561 -15.63998 -15.51753 -15.37606 -15.29356 -14.31340 -14.26881 -14.22859 -14.03572 -13.65962 -13.30919 -13.18469 -13.10271 -13.02891 -12.91249 -12.72985 -12.48117 -12.24868 -12.20247 -12.15887 -11.95034 -11.49013 -11.46754 -11.03476 -10.89959 -10.69146 -10.52561 -10.40623 -9.70649 -5.03338 -0.81644 -0.51663 0.26219 0.59993 1.15289 1.19080 1.50074 1.89878 1.96062 1.98006 2.00881 2.70281 3.32356 3.34303 3.42759 3.53418 3.58584 3.70134 3.84735 3.91868 4.03216 4.05564 4.13331 4.18380 4.38881 4.43313 4.47944 4.51724 4.66267 4.71749 4.75118 4.87424 4.97574 5.00764 5.02088 5.08123 5.15659 5.22284 5.29527 5.38508 5.95939 6.29316 6.76525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.016 3.984 4 H 0.095 0.905 5 C -0.110 4.110 6 C -0.125 4.125 7 C 0.156 3.844 8 H 0.081 0.919 9 N -1.103 6.103 10 S 2.717 3.283 11 O -0.943 6.943 12 O -0.950 6.950 13 C -0.777 4.777 14 C 0.012 3.988 15 C -0.099 4.099 16 O -0.515 6.515 17 Si 0.700 3.300 18 C -0.169 4.169 19 C -0.163 4.163 20 S 0.225 5.775 21 C -0.141 4.141 22 C -0.110 4.110 23 H 0.215 0.785 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.423 0.577 29 H 0.154 0.846 30 H 0.372 0.628 31 H -0.257 1.257 32 H -0.250 1.250 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 1.125 3.976 5.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C -0.002 4.002 4 H 0.113 0.887 5 C -0.148 4.148 6 C -0.164 4.164 7 C 0.049 3.951 8 H 0.099 0.901 9 N -0.863 5.863 10 S 2.802 3.198 11 O -0.934 6.934 12 O -0.940 6.940 13 C -0.978 4.978 14 C -0.006 4.006 15 C -0.211 4.211 16 O -0.321 6.321 17 Si 0.600 3.400 18 C -0.199 4.199 19 C -0.301 4.301 20 S 0.492 5.508 21 C -0.180 4.180 22 C -0.148 4.148 23 H 0.232 0.768 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.258 0.742 29 H 0.172 0.828 30 H 0.219 0.781 31 H -0.182 1.182 32 H -0.174 1.174 33 H 0.172 0.828 34 H 0.196 0.804 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.157 1.650 2.517 5.132 hybrid contribution -0.881 -0.570 2.243 2.477 sum 3.276 1.079 4.761 5.879 Atomic orbital electron populations 1.24931 0.95964 1.01188 1.00617 1.22879 0.94132 1.00087 1.00458 1.18427 0.84996 1.00110 0.96636 0.88688 1.21554 1.01084 0.93319 0.98864 1.21846 1.02179 0.97375 0.94964 1.20819 0.98093 0.81480 0.94677 0.90143 1.55538 1.30450 1.28342 1.71974 1.01355 0.72539 0.73078 0.72788 1.93561 1.70168 1.45667 1.83960 1.93625 1.81708 1.68303 1.50364 1.35796 1.23682 1.12031 1.26261 1.19126 0.96103 0.93383 0.91985 1.25495 0.90176 1.02593 1.02846 1.86710 1.35565 1.82688 1.27089 0.94685 0.84689 0.77658 0.82987 1.20369 0.93259 1.01980 1.04289 1.26230 1.04209 0.98549 1.01143 1.84338 1.02234 1.23915 1.40319 1.22123 1.02271 0.93780 0.99868 1.21556 1.01141 0.97225 0.94919 0.76819 0.90521 0.90842 0.90965 0.90679 0.74173 0.82828 0.78079 1.18209 1.17406 0.82803 0.80432 0.90804 0.90027 0.90758 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.13 19.25 29.55 0.57 0.44 16 2 C -0.18 -0.14 10.06 -37.12 -0.37 -0.51 16 3 C 0.02 -0.02 3.07 -93.41 -0.29 -0.30 16 4 H 0.10 -0.19 8.14 -51.93 -0.42 -0.62 16 5 C -0.11 0.23 5.43 -26.73 -0.15 0.09 16 6 C -0.12 0.19 5.23 -26.73 -0.14 0.06 16 7 C 0.16 -0.09 2.65 -67.93 -0.18 -0.28 16 8 H 0.08 -0.11 7.63 -51.93 -0.40 -0.50 16 9 N -1.10 -0.18 5.47 -4.89 -0.03 -0.20 16 10 S 2.72 7.18 5.67 -107.50 -0.61 6.57 16 11 O -0.94 -4.59 14.92 -57.17 -0.85 -5.44 16 12 O -0.95 -4.78 17.17 -57.17 -0.98 -5.76 16 13 C -0.78 -0.85 6.40 29.04 0.19 -0.66 16 14 C 0.01 0.00 5.13 -106.25 -0.55 -0.54 16 15 C -0.10 -0.05 1.97 36.00 0.07 0.02 16 16 O -0.51 -0.24 12.88 -35.23 -0.45 -0.70 16 17 Si 0.70 -0.74 30.46 -169.99 -5.18 -5.92 16 18 C -0.17 0.25 8.74 -41.21 -0.36 -0.11 16 19 C -0.16 0.34 11.23 29.04 0.33 0.67 16 20 S 0.22 -0.11 22.99 -107.50 -2.47 -2.58 16 21 C -0.14 -0.03 5.31 -26.73 -0.14 -0.17 16 22 C -0.11 0.12 5.43 -26.73 -0.15 -0.03 16 23 H 0.21 -0.40 7.80 -54.09 -0.42 -0.82 16 24 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 25 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 26 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 27 H 0.07 -0.06 7.23 -51.93 -0.38 -0.43 16 28 H 0.42 -0.39 8.84 -34.47 -0.30 -0.69 16 29 H 0.15 0.31 5.65 -51.93 -0.29 0.01 16 30 H 0.37 -1.09 8.70 45.56 0.40 -0.69 16 31 H -0.26 0.09 6.80 56.52 0.38 0.47 16 32 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 33 H 0.15 -0.48 5.53 -52.49 -0.29 -0.77 16 34 H 0.18 -0.85 8.06 -52.49 -0.42 -1.28 16 35 H 0.07 0.06 7.23 -51.93 -0.38 -0.32 16 36 H 0.08 0.12 7.64 -51.93 -0.40 -0.28 16 37 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 LS Contribution 336.51 15.07 5.07 5.07 Total: 0.00 -7.99 336.51 -11.30 -19.29 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -4.63 Total: -8.98 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.17 Total: -1.34 kcal Atomic # 7 Polarization: -0.18 SS G_CDS: -0.03 Total: -0.20 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -2.29 Total: -11.90 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: -5.18 Total: -5.92 kcal Atomic # 16 Polarization: 7.07 SS G_CDS: -3.08 Total: 3.99 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -7.99 -11.30 -19.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_13652106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.936 kcal (2) G-P(sol) polarization free energy of solvation -7.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds