Wall clock time and date at job start Mon Mar 8 2021 14:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09004 * 109.46636 * 198.47310 * 3 2 1 5 5 C 1.52996 * 109.47606 * 318.47610 * 3 2 1 6 6 C 1.53002 * 109.46891 * 59.99957 * 5 3 2 7 7 C 1.52997 * 109.46978 * 60.00410 * 6 5 3 8 8 H 1.09001 * 109.47375 * 59.99908 * 7 6 5 9 9 N 1.46504 * 109.47417 * 179.97438 * 7 6 5 10 10 S 1.65592 * 120.00236 * 215.00293 * 9 7 6 11 11 O 1.42098 * 106.40713 * 178.53851 * 10 9 7 12 12 O 1.42105 * 106.40264 * 311.45463 * 10 9 7 13 13 C 1.76196 * 107.22072 * 64.99358 * 10 9 7 14 14 C 1.33391 * 125.20425 * 90.00517 * 13 10 9 15 15 C 1.50698 * 122.53786 * 359.95179 * 14 13 10 16 16 O 1.42902 * 109.47492 * 285.00595 * 15 14 13 17 17 Si 1.86301 * 109.47022 * 165.00477 * 15 14 13 18 18 C 1.38428 * 114.92265 * 179.97438 * 14 13 10 19 19 C 1.33387 * 114.91698 * 359.97438 * 18 14 13 20 20 S 1.75878 * 109.59827 * 359.76316 * 19 18 14 21 21 C 1.53006 * 109.47164 * 299.99874 * 7 6 5 22 22 C 1.52997 * 109.47127 * 59.99836 * 21 7 6 23 23 H 4.18737 * 15.03833 * 359.97438 * 4 2 1 24 24 H 1.08992 * 109.47554 * 179.97438 * 5 3 2 25 25 H 1.09004 * 109.47108 * 300.00249 * 5 3 2 26 26 H 1.09002 * 109.47097 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47142 * 300.00176 * 6 5 3 28 28 H 0.97000 * 119.99461 * 34.99435 * 9 7 6 29 29 H 1.09000 * 109.47246 * 45.00261 * 15 14 13 30 30 H 0.96701 * 113.99581 * 300.00324 * 16 15 14 31 31 H 1.48496 * 110.00256 * 58.68381 * 17 15 14 32 32 H 1.48506 * 109.99672 * 180.02562 * 17 15 14 33 33 H 1.07997 * 122.53594 * 179.97438 * 18 14 13 34 34 H 1.07999 * 125.19638 * 179.97438 * 19 18 14 35 35 H 1.08998 * 109.46505 * 299.99708 * 21 7 6 36 36 H 1.08996 * 109.46884 * 180.02562 * 21 7 6 37 37 H 1.09002 * 109.47153 * 180.02562 * 22 21 7 38 38 H 1.09001 * 109.46832 * 60.00321 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9756 0.3256 5 6 3.1566 -1.0790 0.9562 6 6 2.6473 -2.4474 0.4991 7 6 3.1574 -2.7353 -0.9143 8 1 4.2474 -2.7348 -0.9144 9 7 2.6702 -4.0458 -1.3519 10 16 3.6204 -5.0044 -2.3113 11 8 2.8899 -6.2034 -2.5297 12 8 4.0888 -4.1765 -3.3671 13 6 5.0369 -5.4504 -1.3631 14 6 5.1324 -6.5290 -0.5841 15 6 4.0041 -7.5150 -0.4232 16 8 2.9947 -6.9511 0.4165 17 14 4.6531 -9.0802 0.3513 18 6 6.3461 -6.6737 0.0656 19 6 7.2364 -5.7129 -0.1862 20 16 6.5445 -4.5462 -1.3057 21 6 2.6469 -1.6555 -1.8706 22 6 3.1562 -0.2872 -1.4135 23 1 -1.0500 -0.0009 -0.0008 24 1 4.2466 -1.0788 0.9559 25 1 2.7932 -0.8739 1.9632 26 1 3.0106 -3.2166 1.1806 27 1 1.5572 -2.4479 0.4991 28 1 1.7911 -4.3521 -1.0795 29 1 3.5783 -7.7426 -1.4004 30 1 3.3035 -6.7234 1.3041 31 1 5.2648 -8.7785 1.6703 32 1 3.5501 -10.0611 0.5148 33 1 6.5561 -7.5018 0.7263 34 1 8.2313 -5.6614 0.2308 35 1 1.5569 -1.6562 -1.8706 36 1 3.0100 -1.8609 -2.8776 37 1 2.7921 0.4821 -2.0945 38 1 4.2462 -0.2866 -1.4135 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761048_13652106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:22 Heat of formation + Delta-G solvation = -16.634123 kcal Electronic energy + Delta-G solvation = -24747.585141 eV Core-core repulsion = 21197.841420 eV Total energy + Delta-G solvation = -3549.743721 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28218 -40.11171 -38.33950 -37.18342 -37.07176 -36.00615 -32.90145 -31.81320 -31.41119 -29.77357 -27.99438 -24.29645 -23.87177 -23.67192 -21.95134 -21.42060 -20.09367 -19.49125 -18.77892 -18.46112 -18.00372 -17.50897 -16.59886 -16.46206 -16.35841 -15.92189 -15.65888 -15.45109 -15.32953 -15.23154 -14.31225 -14.24261 -14.18658 -13.97890 -13.69534 -13.38547 -13.27039 -13.23772 -13.16337 -12.92698 -12.85313 -12.45843 -12.22276 -12.17123 -12.11000 -11.90662 -11.47798 -11.43483 -11.03046 -10.86880 -10.67324 -10.48788 -10.37346 -9.63716 -4.94717 -0.84337 -0.58828 0.29857 0.71879 1.23383 1.26085 1.55070 1.89452 1.93997 1.95215 1.97444 2.55008 3.32112 3.41005 3.44077 3.54010 3.63002 3.76858 3.91961 4.09246 4.11280 4.15269 4.21494 4.24751 4.46718 4.53126 4.54564 4.58457 4.76743 4.79188 4.85943 4.93906 5.09497 5.11439 5.13037 5.18115 5.19385 5.28062 5.34663 5.44155 5.95235 6.47103 6.75803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.190 4.190 3 C 0.014 3.986 4 H 0.108 0.892 5 C -0.108 4.108 6 C -0.120 4.120 7 C 0.155 3.845 8 H 0.090 0.910 9 N -1.097 6.097 10 S 2.723 3.277 11 O -0.975 6.975 12 O -0.982 6.982 13 C -0.798 4.798 14 C 0.018 3.982 15 C -0.118 4.118 16 O -0.530 6.530 17 Si 0.779 3.221 18 C -0.178 4.178 19 C -0.142 4.142 20 S 0.217 5.783 21 C -0.143 4.143 22 C -0.109 4.109 23 H 0.230 0.770 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.426 0.574 29 H 0.133 0.867 30 H 0.387 0.613 31 H -0.253 1.253 32 H -0.300 1.300 33 H 0.176 0.824 34 H 0.211 0.789 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 1.223 5.735 8.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.190 4.190 3 C -0.004 4.004 4 H 0.126 0.874 5 C -0.146 4.146 6 C -0.159 4.159 7 C 0.048 3.952 8 H 0.108 0.892 9 N -0.858 5.858 10 S 2.812 3.188 11 O -0.965 6.965 12 O -0.972 6.972 13 C -1.002 5.002 14 C -0.001 4.001 15 C -0.228 4.228 16 O -0.338 6.338 17 Si 0.681 3.319 18 C -0.207 4.207 19 C -0.280 4.280 20 S 0.484 5.516 21 C -0.182 4.182 22 C -0.147 4.147 23 H 0.247 0.753 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.263 0.737 29 H 0.150 0.850 30 H 0.236 0.764 31 H -0.178 1.178 32 H -0.228 1.228 33 H 0.193 0.807 34 H 0.228 0.772 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.146 1.787 4.256 7.686 hybrid contribution -1.540 -0.602 1.701 2.373 sum 4.606 1.185 5.958 7.623 Atomic orbital electron populations 1.25537 0.96902 1.01400 1.00746 1.23480 0.95088 1.00001 1.00409 1.18562 0.83949 1.01171 0.96689 0.87443 1.21579 1.02185 0.92249 0.98558 1.21813 1.01516 0.98269 0.94305 1.20940 0.98667 0.80531 0.95045 0.89174 1.55357 1.30412 1.28471 1.71603 1.00728 0.72768 0.72407 0.72922 1.93523 1.71276 1.46866 1.84837 1.93580 1.82318 1.68889 1.52444 1.35405 1.23771 1.13465 1.27513 1.19245 0.96608 0.92641 0.91587 1.25732 0.90396 1.04204 1.02460 1.86674 1.36079 1.82942 1.28141 0.93732 0.82660 0.73867 0.81645 1.20530 0.92451 1.02994 1.04683 1.26638 1.05154 0.96918 0.99262 1.84380 1.01552 1.24502 1.41173 1.22115 1.01602 0.95146 0.99349 1.21564 1.02095 0.96024 0.94989 0.75343 0.88650 0.90535 0.89939 0.91773 0.73729 0.84982 0.76408 1.17783 1.22827 0.80680 0.77171 0.91912 0.91731 0.91224 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -0.49 19.25 74.32 1.43 0.94 16 2 C -0.19 -0.41 10.06 31.13 0.31 -0.10 16 3 C 0.01 -0.04 3.07 -12.60 -0.04 -0.07 16 4 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 5 C -0.11 0.55 5.43 30.59 0.17 0.71 16 6 C -0.12 0.38 5.23 30.59 0.16 0.54 16 7 C 0.15 -0.08 2.65 44.99 0.12 0.04 16 8 H 0.09 -0.22 7.63 -2.39 -0.02 -0.24 16 9 N -1.10 -2.11 5.47 -169.37 -0.93 -3.04 16 10 S 2.72 19.66 5.67 -56.49 -0.32 19.34 16 11 O -0.97 -12.06 14.92 -128.00 -1.91 -13.97 16 12 O -0.98 -12.13 17.17 -128.00 -2.20 -14.32 16 13 C -0.80 -2.06 6.40 66.72 0.43 -1.63 16 14 C 0.02 0.00 5.13 -20.92 -0.11 -0.11 16 15 C -0.12 -0.20 1.97 71.24 0.14 -0.06 16 16 O -0.53 -0.86 12.88 -148.98 -1.92 -2.78 16 17 Si 0.78 -2.03 30.46 68.60 2.09 0.06 16 18 C -0.18 0.90 8.74 21.22 0.19 1.09 16 19 C -0.14 0.97 11.23 66.72 0.75 1.72 16 20 S 0.22 -0.37 22.99 -56.49 -1.30 -1.67 16 21 C -0.14 -0.26 5.31 30.60 0.16 -0.10 16 22 C -0.11 0.20 5.43 30.59 0.17 0.37 16 23 H 0.23 -0.68 7.80 -4.42 -0.03 -0.71 16 24 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 25 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 26 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.06 -0.05 7.23 -2.39 -0.02 -0.06 16 28 H 0.43 0.06 8.84 -96.75 -0.85 -0.79 16 29 H 0.13 0.80 5.65 -2.39 -0.01 0.78 16 30 H 0.39 -2.35 8.70 -74.06 -0.64 -2.99 16 31 H -0.25 0.80 6.80 99.48 0.68 1.48 16 32 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 33 H 0.18 -1.65 5.53 -2.91 -0.02 -1.66 16 34 H 0.21 -2.88 8.06 -2.91 -0.02 -2.90 16 35 H 0.06 0.23 7.23 -2.39 -0.02 0.21 16 36 H 0.06 0.33 7.64 -2.39 -0.02 0.31 16 37 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 Total: 0.00 -20.47 336.51 -3.00 -23.47 By element: Atomic # 1 Polarization: -10.04 SS G_CDS: -0.39 Total: -10.43 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 3.87 Total: 3.34 kcal Atomic # 7 Polarization: -2.11 SS G_CDS: -0.93 Total: -3.04 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -6.03 Total: -31.07 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: 2.09 Total: 0.06 kcal Atomic # 16 Polarization: 19.29 SS G_CDS: -1.62 Total: 17.67 kcal Total: -20.47 -3.00 -23.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_13652106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.838 kcal (2) G-P(sol) polarization free energy of solvation -20.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds