Wall clock time and date at job start Mon Mar 8 2021 14:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46894 * 184.98376 * 3 2 1 5 5 C 1.53002 * 109.47352 * 304.98408 * 3 2 1 6 6 C 1.53001 * 109.46696 * 60.00411 * 5 3 2 7 7 C 1.52996 * 109.47278 * 60.00035 * 6 5 3 8 8 H 1.09004 * 109.47405 * 60.00138 * 7 6 5 9 9 N 1.46501 * 109.47194 * 179.97438 * 7 6 5 10 10 S 1.65596 * 120.00439 * 263.55094 * 9 7 6 11 11 O 1.42100 * 106.40612 * 180.45609 * 10 9 7 12 12 O 1.42099 * 106.40290 * 313.37774 * 10 9 7 13 13 C 1.76199 * 107.21753 * 66.91660 * 10 9 7 14 14 C 1.33383 * 122.54043 * 67.31879 * 13 10 9 15 15 C 1.50704 * 125.20311 * 0.02856 * 14 13 10 16 16 O 1.42900 * 109.46784 * 314.32810 * 15 14 13 17 17 Si 1.86305 * 109.47148 * 194.32591 * 15 14 13 18 18 S 1.75887 * 109.59464 * 179.90198 * 14 13 10 19 19 C 1.75885 * 90.96981 * 0.30617 * 18 14 13 20 20 C 1.33394 * 109.59243 * 359.82706 * 19 18 14 21 21 C 1.53002 * 109.47228 * 299.99639 * 7 6 5 22 22 C 1.52996 * 109.47293 * 64.98784 * 3 2 1 23 23 H 4.18737 * 15.03780 * 0.02562 * 4 2 1 24 24 H 1.08993 * 109.47088 * 300.00587 * 5 3 2 25 25 H 1.08996 * 109.47034 * 179.97438 * 5 3 2 26 26 H 1.08999 * 109.47453 * 299.99615 * 6 5 3 27 27 H 1.09006 * 109.46840 * 180.02562 * 6 5 3 28 28 H 0.97008 * 119.99648 * 83.55166 * 9 7 6 29 29 H 1.09004 * 109.47028 * 74.33025 * 15 14 13 30 30 H 0.96694 * 114.00069 * 299.79537 * 16 15 14 31 31 H 1.48507 * 109.99620 * 58.68254 * 17 15 14 32 32 H 1.48492 * 109.99787 * 179.97438 * 17 15 14 33 33 H 1.08002 * 125.20165 * 179.86433 * 19 18 14 34 34 H 1.07993 * 122.53718 * 179.97438 * 20 19 18 35 35 H 1.08996 * 109.47034 * 300.00526 * 21 7 6 36 36 H 1.08993 * 109.47088 * 179.97438 * 21 7 6 37 37 H 1.09004 * 109.47405 * 180.02562 * 22 3 2 38 38 H 1.09006 * 109.47338 * 59.99792 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0246 0.0893 5 6 3.1565 -0.8262 1.1819 6 6 2.6472 -2.2635 1.0564 7 6 3.1575 -2.8731 -0.2508 8 1 4.2475 -2.8726 -0.2508 9 7 2.6703 -4.2495 -0.3706 10 16 3.6348 -5.5128 0.0943 11 8 2.8908 -6.6979 -0.1528 12 8 4.9161 -5.2679 -0.4692 13 6 3.8308 -5.4037 1.8419 14 6 2.8205 -5.5982 2.6907 15 6 1.4049 -5.9306 2.2948 16 8 0.9956 -5.0743 1.2265 17 14 0.2767 -5.6827 3.7565 18 16 3.3938 -5.4111 4.3430 19 6 5.0195 -5.0599 3.7708 20 6 5.0437 -5.1037 2.4378 21 6 2.6470 -2.0463 -1.4326 22 6 3.1563 -0.6090 -1.3072 23 1 -1.0500 -0.0012 0.0004 24 1 2.7929 -0.3919 2.1131 25 1 4.2464 -0.8260 1.1815 26 1 1.5572 -2.2641 1.0564 27 1 3.0104 -2.8524 1.8986 28 1 1.7826 -4.4209 -0.7223 29 1 1.3534 -6.9692 1.9681 30 1 1.0138 -4.1332 1.4478 31 1 0.3619 -4.2782 4.2314 32 1 -1.1224 -6.0067 3.3788 33 1 5.8684 -4.8426 4.4022 34 1 5.9415 -4.9188 1.8668 35 1 1.5571 -2.0468 -1.4326 36 1 3.0109 -2.4804 -2.3638 37 1 4.2464 -0.6089 -1.3070 38 1 2.7927 -0.0199 -2.1492 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17761048_14772022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:27 Heat of formation + Delta-G solvation = -13.185946 kcal Electronic energy + Delta-G solvation = -25436.144661 eV Core-core repulsion = 21886.550464 eV Total energy + Delta-G solvation = -3549.594196 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.49778 -39.68326 -38.24108 -37.54544 -36.67467 -35.92999 -32.93887 -31.98949 -31.87950 -29.81050 -27.54721 -24.48484 -23.90873 -23.85441 -21.90236 -21.69712 -20.02398 -19.41823 -18.71431 -18.38119 -17.96809 -17.35143 -17.08369 -16.59255 -16.36026 -15.86872 -15.61414 -15.51493 -15.43729 -15.08823 -14.40259 -14.24051 -14.19183 -14.09087 -13.94054 -13.36281 -13.10193 -13.01724 -12.99573 -12.86127 -12.78900 -12.59329 -12.33795 -12.27792 -12.18807 -12.00473 -11.61794 -11.50791 -11.16581 -11.06653 -10.97011 -10.40830 -10.15278 -9.81907 -5.27803 -0.63012 -0.45547 0.31194 0.58199 0.96975 1.11462 1.39291 1.71971 1.88508 1.91413 2.12019 2.80401 3.01681 3.22301 3.28706 3.53489 3.55248 3.65668 3.80444 3.97944 4.03114 4.05065 4.17698 4.24114 4.33404 4.36305 4.38411 4.42911 4.62810 4.68963 4.72974 4.88274 4.89121 4.94097 4.98900 5.05212 5.10444 5.15326 5.19516 5.31417 5.98085 6.10735 6.68713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.017 3.983 4 H 0.096 0.904 5 C -0.108 4.108 6 C -0.145 4.145 7 C 0.149 3.851 8 H 0.096 0.904 9 N -1.101 6.101 10 S 2.715 3.285 11 O -0.948 6.948 12 O -0.960 6.960 13 C -0.666 4.666 14 C -0.100 4.100 15 C -0.068 4.068 16 O -0.519 6.519 17 Si 0.670 3.330 18 S 0.156 5.844 19 C -0.210 4.210 20 C -0.076 4.076 21 C -0.123 4.123 22 C -0.111 4.111 23 H 0.214 0.786 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.424 0.576 29 H 0.153 0.847 30 H 0.377 0.623 31 H -0.240 1.240 32 H -0.228 1.228 33 H 0.175 0.825 34 H 0.158 0.842 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 3.277 4.315 5.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C -0.001 4.001 4 H 0.113 0.887 5 C -0.146 4.146 6 C -0.184 4.184 7 C 0.042 3.958 8 H 0.114 0.886 9 N -0.862 5.862 10 S 2.801 3.199 11 O -0.938 6.938 12 O -0.950 6.950 13 C -0.765 4.765 14 C -0.221 4.221 15 C -0.179 4.179 16 O -0.328 6.328 17 Si 0.567 3.433 18 S 0.420 5.580 19 C -0.346 4.346 20 C -0.104 4.104 21 C -0.162 4.162 22 C -0.149 4.149 23 H 0.231 0.769 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.262 0.738 29 H 0.170 0.830 30 H 0.228 0.772 31 H -0.164 1.164 32 H -0.151 1.151 33 H 0.193 0.807 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.371 2.440 5.348 6.036 hybrid contribution 0.204 1.255 -1.302 1.819 sum -1.167 3.695 4.046 5.602 Atomic orbital electron populations 1.24929 0.95953 1.01363 1.00610 1.22896 0.94125 0.99956 1.00447 1.18418 0.84904 1.00648 0.96147 0.88651 1.21516 1.01311 0.94135 0.97688 1.22204 1.01806 0.96615 0.97750 1.20874 0.99374 0.80406 0.95162 0.88604 1.55691 1.32095 1.18775 1.79687 1.01410 0.72986 0.72727 0.72807 1.93594 1.71923 1.44255 1.84010 1.93582 1.40630 1.85437 1.75375 1.29984 0.99085 1.19198 1.28238 1.24997 0.99372 1.00484 0.97216 1.24985 0.92522 0.99751 1.00670 1.86678 1.88340 1.21154 1.36601 0.95028 0.82094 0.86038 0.80184 1.84261 1.03512 1.64961 1.05296 1.25918 1.00546 1.09408 0.98683 1.19758 0.97011 0.99564 0.94040 1.21810 1.01874 0.94706 0.97851 1.21566 1.01341 0.95468 0.96509 0.76876 0.91015 0.90277 0.91042 0.91430 0.73846 0.83004 0.77220 1.16355 1.15110 0.80736 0.82460 0.90863 0.90550 0.90271 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 0.04 19.25 29.55 0.57 0.61 16 2 C -0.17 0.01 10.06 -37.12 -0.37 -0.36 16 3 C 0.02 -0.03 3.07 -93.41 -0.29 -0.32 16 4 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 16 5 C -0.11 0.27 5.43 -26.73 -0.15 0.12 16 6 C -0.14 0.31 4.26 -26.73 -0.11 0.20 16 7 C 0.15 -0.21 2.81 -67.93 -0.19 -0.40 16 8 H 0.10 -0.11 7.44 -51.93 -0.39 -0.50 16 9 N -1.10 0.48 3.58 -4.89 -0.02 0.47 16 10 S 2.71 6.83 4.92 -107.50 -0.53 6.30 16 11 O -0.95 -5.12 16.59 -61.77 -1.03 -6.15 16 12 O -0.96 -4.88 16.60 -57.17 -0.95 -5.83 16 13 C -0.67 -0.62 4.86 -41.21 -0.20 -0.82 16 14 C -0.10 0.01 5.64 -36.00 -0.20 -0.19 16 15 C -0.07 0.04 2.08 36.01 0.07 0.11 16 16 O -0.52 0.29 8.50 -42.38 -0.36 -0.07 16 17 Si 0.67 -1.18 31.07 -169.99 -5.28 -6.46 16 18 S 0.16 -0.23 20.72 -107.50 -2.23 -2.46 16 19 C -0.21 0.25 11.23 29.04 0.33 0.57 16 20 C -0.08 -0.02 9.70 -41.21 -0.40 -0.42 16 21 C -0.12 0.20 5.24 -26.73 -0.14 0.06 16 22 C -0.11 0.24 5.43 -26.73 -0.15 0.09 16 23 H 0.21 -0.54 7.80 -54.09 -0.42 -0.96 16 24 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 25 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 26 H 0.07 -0.16 6.17 -51.93 -0.32 -0.48 16 27 H 0.07 -0.15 7.07 -51.93 -0.37 -0.52 16 28 H 0.42 -0.56 7.64 -34.47 -0.26 -0.83 16 29 H 0.15 -0.07 7.77 -51.93 -0.40 -0.48 16 30 H 0.38 -0.99 6.04 45.56 0.28 -0.71 16 31 H -0.24 0.10 7.11 56.52 0.40 0.50 16 32 H -0.23 -0.16 7.11 56.52 0.40 0.24 16 33 H 0.18 -0.59 8.06 -52.49 -0.42 -1.01 16 34 H 0.16 -0.05 7.74 -52.49 -0.41 -0.46 16 35 H 0.07 -0.09 7.23 -51.93 -0.38 -0.47 16 36 H 0.08 -0.10 8.14 -51.93 -0.42 -0.53 16 37 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 38 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 LS Contribution 327.05 15.07 4.93 4.93 Total: 0.00 -7.85 327.05 -11.52 -19.36 By element: Atomic # 1 Polarization: -4.52 SS G_CDS: -4.82 Total: -9.35 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.23 Total: -0.74 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -0.02 Total: 0.47 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -2.33 Total: -12.05 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: -5.28 Total: -6.46 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -2.76 Total: 3.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -7.85 -11.52 -19.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_14772022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.175 kcal (2) G-P(sol) polarization free energy of solvation -7.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds