Wall clock time and date at job start Mon Mar 8 2021 14:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46894 * 184.98376 * 3 2 1 5 5 C 1.53002 * 109.47352 * 304.98408 * 3 2 1 6 6 C 1.53001 * 109.46696 * 60.00411 * 5 3 2 7 7 C 1.52996 * 109.47278 * 60.00035 * 6 5 3 8 8 H 1.09004 * 109.47405 * 60.00138 * 7 6 5 9 9 N 1.46501 * 109.47194 * 179.97438 * 7 6 5 10 10 S 1.65596 * 120.00439 * 263.55094 * 9 7 6 11 11 O 1.42100 * 106.40612 * 180.45609 * 10 9 7 12 12 O 1.42099 * 106.40290 * 313.37774 * 10 9 7 13 13 C 1.76199 * 107.21753 * 66.91660 * 10 9 7 14 14 C 1.33383 * 122.54043 * 67.31879 * 13 10 9 15 15 C 1.50704 * 125.20311 * 0.02856 * 14 13 10 16 16 O 1.42900 * 109.46784 * 314.32810 * 15 14 13 17 17 Si 1.86305 * 109.47148 * 194.32591 * 15 14 13 18 18 S 1.75887 * 109.59464 * 179.90198 * 14 13 10 19 19 C 1.75885 * 90.96981 * 0.30617 * 18 14 13 20 20 C 1.33394 * 109.59243 * 359.82706 * 19 18 14 21 21 C 1.53002 * 109.47228 * 299.99639 * 7 6 5 22 22 C 1.52996 * 109.47293 * 64.98784 * 3 2 1 23 23 H 4.18737 * 15.03780 * 0.02562 * 4 2 1 24 24 H 1.08993 * 109.47088 * 300.00587 * 5 3 2 25 25 H 1.08996 * 109.47034 * 179.97438 * 5 3 2 26 26 H 1.08999 * 109.47453 * 299.99615 * 6 5 3 27 27 H 1.09006 * 109.46840 * 180.02562 * 6 5 3 28 28 H 0.97008 * 119.99648 * 83.55166 * 9 7 6 29 29 H 1.09004 * 109.47028 * 74.33025 * 15 14 13 30 30 H 0.96694 * 114.00069 * 299.79537 * 16 15 14 31 31 H 1.48507 * 109.99620 * 58.68254 * 17 15 14 32 32 H 1.48492 * 109.99787 * 179.97438 * 17 15 14 33 33 H 1.08002 * 125.20165 * 179.86433 * 19 18 14 34 34 H 1.07993 * 122.53718 * 179.97438 * 20 19 18 35 35 H 1.08996 * 109.47034 * 300.00526 * 21 7 6 36 36 H 1.08993 * 109.47088 * 179.97438 * 21 7 6 37 37 H 1.09004 * 109.47405 * 180.02562 * 22 3 2 38 38 H 1.09006 * 109.47338 * 59.99792 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 1.0246 0.0893 5 6 3.1565 -0.8262 1.1819 6 6 2.6472 -2.2635 1.0564 7 6 3.1575 -2.8731 -0.2508 8 1 4.2475 -2.8726 -0.2508 9 7 2.6703 -4.2495 -0.3706 10 16 3.6348 -5.5128 0.0943 11 8 2.8908 -6.6979 -0.1528 12 8 4.9161 -5.2679 -0.4692 13 6 3.8308 -5.4037 1.8419 14 6 2.8205 -5.5982 2.6907 15 6 1.4049 -5.9306 2.2948 16 8 0.9956 -5.0743 1.2265 17 14 0.2767 -5.6827 3.7565 18 16 3.3938 -5.4111 4.3430 19 6 5.0195 -5.0599 3.7708 20 6 5.0437 -5.1037 2.4378 21 6 2.6470 -2.0463 -1.4326 22 6 3.1563 -0.6090 -1.3072 23 1 -1.0500 -0.0012 0.0004 24 1 2.7929 -0.3919 2.1131 25 1 4.2464 -0.8260 1.1815 26 1 1.5572 -2.2641 1.0564 27 1 3.0104 -2.8524 1.8986 28 1 1.7826 -4.4209 -0.7223 29 1 1.3534 -6.9692 1.9681 30 1 1.0138 -4.1332 1.4478 31 1 0.3619 -4.2782 4.2314 32 1 -1.1224 -6.0067 3.3788 33 1 5.8684 -4.8426 4.4022 34 1 5.9415 -4.9188 1.8668 35 1 1.5571 -2.0468 -1.4326 36 1 3.0109 -2.4804 -2.3638 37 1 4.2464 -0.6089 -1.3070 38 1 2.7927 -0.0199 -2.1492 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761048_14772022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:26 Heat of formation + Delta-G solvation = -11.315047 kcal Electronic energy + Delta-G solvation = -25436.063533 eV Core-core repulsion = 21886.550464 eV Total energy + Delta-G solvation = -3549.513068 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38701 -39.64136 -38.43384 -37.58159 -36.97212 -35.88741 -32.87721 -31.83422 -31.82485 -29.73166 -27.51745 -24.44490 -23.80591 -23.70109 -21.83586 -21.67138 -20.11444 -19.39006 -18.75941 -18.35500 -17.95658 -17.33497 -17.06436 -16.53792 -16.35697 -15.93480 -15.48356 -15.45155 -15.32910 -15.09220 -14.34455 -14.19915 -14.12904 -14.06114 -13.88899 -13.29970 -13.23120 -13.19745 -13.11645 -12.92367 -12.80742 -12.56508 -12.32594 -12.16195 -12.09798 -11.91439 -11.60083 -11.41815 -11.10507 -10.98235 -10.87255 -10.35673 -10.10074 -9.73269 -5.15909 -0.70506 -0.49004 0.37659 0.64377 1.05509 1.13376 1.48691 1.80262 1.93954 1.96691 2.05468 2.68693 3.07194 3.26577 3.41583 3.45136 3.66356 3.77941 3.93434 4.11975 4.12800 4.19680 4.24602 4.32712 4.43245 4.47900 4.52544 4.55127 4.73490 4.79582 4.87370 4.95811 5.05373 5.10898 5.14862 5.16412 5.18418 5.28218 5.33771 5.44445 6.10419 6.17011 6.75319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.187 4.187 3 C 0.015 3.985 4 H 0.104 0.896 5 C -0.107 4.107 6 C -0.142 4.142 7 C 0.149 3.851 8 H 0.094 0.906 9 N -1.092 6.092 10 S 2.722 3.278 11 O -0.984 6.984 12 O -0.993 6.993 13 C -0.672 4.672 14 C -0.109 4.109 15 C -0.083 4.083 16 O -0.529 6.529 17 Si 0.742 3.258 18 S 0.195 5.805 19 C -0.206 4.206 20 C -0.094 4.094 21 C -0.122 4.122 22 C -0.109 4.109 23 H 0.229 0.771 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.428 0.572 29 H 0.147 0.853 30 H 0.385 0.615 31 H -0.251 1.251 32 H -0.265 1.265 33 H 0.199 0.801 34 H 0.157 0.843 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 4.010 5.784 7.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.187 4.187 3 C -0.003 4.003 4 H 0.122 0.878 5 C -0.145 4.145 6 C -0.181 4.181 7 C 0.042 3.958 8 H 0.112 0.888 9 N -0.855 5.855 10 S 2.812 3.188 11 O -0.974 6.974 12 O -0.983 6.983 13 C -0.774 4.774 14 C -0.230 4.230 15 C -0.193 4.193 16 O -0.339 6.339 17 Si 0.640 3.360 18 S 0.460 5.540 19 C -0.341 4.341 20 C -0.122 4.122 21 C -0.161 4.161 22 C -0.147 4.147 23 H 0.245 0.755 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.267 0.733 29 H 0.165 0.835 30 H 0.237 0.763 31 H -0.175 1.175 32 H -0.190 1.190 33 H 0.216 0.784 34 H 0.175 0.825 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.089 3.173 6.779 7.564 hybrid contribution 0.085 1.048 -1.730 2.024 sum -1.004 4.222 5.049 6.658 Atomic orbital electron populations 1.25495 0.96807 1.01474 1.00691 1.23395 0.94909 0.99936 1.00441 1.18517 0.84050 1.01267 0.96429 0.87824 1.21527 1.02011 0.93526 0.97421 1.22178 1.01805 0.96931 0.97203 1.20968 0.99332 0.79659 0.95852 0.88770 1.55448 1.31863 1.18608 1.79612 1.00744 0.72239 0.72458 0.73387 1.93541 1.72463 1.46347 1.85049 1.93535 1.42182 1.85846 1.76700 1.29661 1.00004 1.20859 1.26918 1.25127 0.99275 1.00270 0.98315 1.25258 0.92950 0.99655 1.01449 1.86658 1.88336 1.21826 1.37088 0.94209 0.78954 0.84301 0.78563 1.84131 1.02854 1.63702 1.03361 1.26257 1.01535 1.07942 0.98409 1.19822 0.96791 1.00798 0.94803 1.21798 1.01625 0.95183 0.97540 1.21567 1.01980 0.94739 0.96408 0.75456 0.90897 0.89121 0.91049 0.91120 0.73333 0.83548 0.76321 1.17540 1.18987 0.78403 0.82516 0.91249 0.90973 0.89187 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 0.04 19.25 74.32 1.43 1.47 16 2 C -0.19 0.02 10.06 31.12 0.31 0.34 16 3 C 0.02 -0.06 3.07 -12.60 -0.04 -0.10 16 4 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 5 C -0.11 0.59 5.43 30.60 0.17 0.75 16 6 C -0.14 0.63 4.26 30.59 0.13 0.76 16 7 C 0.15 -0.33 2.81 44.99 0.13 -0.21 16 8 H 0.09 -0.16 7.44 -2.38 -0.02 -0.18 16 9 N -1.09 -0.35 3.58 -169.38 -0.61 -0.96 16 10 S 2.72 17.95 4.92 -56.49 -0.28 17.67 16 11 O -0.98 -12.62 16.59 -123.60 -2.05 -14.67 16 12 O -0.99 -11.86 16.60 -128.00 -2.13 -13.99 16 13 C -0.67 -1.60 4.86 21.22 0.10 -1.50 16 14 C -0.11 0.03 5.64 24.59 0.14 0.17 16 15 C -0.08 0.06 2.08 71.24 0.15 0.20 16 16 O -0.53 0.13 8.50 -142.14 -1.21 -1.07 16 17 Si 0.74 -2.77 31.07 68.60 2.13 -0.63 16 18 S 0.20 -0.85 20.72 -56.49 -1.17 -2.02 16 19 C -0.21 0.76 11.23 66.72 0.75 1.51 16 20 C -0.09 -0.03 9.70 21.22 0.21 0.17 16 21 C -0.12 0.32 5.24 30.60 0.16 0.48 16 22 C -0.11 0.48 5.43 30.59 0.17 0.64 16 23 H 0.23 -1.13 7.80 -4.42 -0.03 -1.16 16 24 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 25 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.07 -0.31 6.17 -2.39 -0.01 -0.32 16 27 H 0.07 -0.34 7.07 -2.38 -0.02 -0.36 16 28 H 0.43 -0.53 7.64 -96.74 -0.74 -1.27 16 29 H 0.15 0.02 7.77 -2.39 -0.02 0.01 16 30 H 0.38 -1.83 6.04 -74.06 -0.45 -2.28 16 31 H -0.25 0.47 7.11 99.48 0.71 1.17 16 32 H -0.27 -0.59 7.11 99.48 0.71 0.12 16 33 H 0.20 -1.78 8.06 -2.91 -0.02 -1.80 16 34 H 0.16 -0.01 7.74 -2.91 -0.02 -0.03 16 35 H 0.07 -0.12 7.23 -2.39 -0.02 -0.14 16 36 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 38 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 Total: 0.00 -18.42 327.05 -1.56 -19.98 By element: Atomic # 1 Polarization: -8.95 SS G_CDS: -0.05 Total: -9.01 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 3.80 Total: 4.69 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -0.61 Total: -0.96 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -5.38 Total: -29.73 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.13 Total: -0.63 kcal Atomic # 16 Polarization: 17.10 SS G_CDS: -1.45 Total: 15.65 kcal Total: -18.42 -1.56 -19.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_14772022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.669 kcal (2) G-P(sol) polarization free energy of solvation -18.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds