Wall clock time and date at job start Mon Mar 8 2021 14:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09006 * 109.46790 * 65.14730 * 3 2 1 5 5 C 1.52998 * 109.46940 * 185.14580 * 3 2 1 6 6 C 1.53002 * 109.47117 * 60.00275 * 5 3 2 7 7 C 1.53002 * 109.47045 * 59.99861 * 6 5 3 8 8 H 1.08995 * 109.47291 * 59.99838 * 7 6 5 9 9 N 1.46498 * 109.46777 * 180.02562 * 7 6 5 10 10 S 1.65607 * 119.99651 * 264.99801 * 9 7 6 11 11 O 1.42097 * 106.40132 * 311.45977 * 10 9 7 12 12 O 1.42107 * 106.39904 * 178.54249 * 10 9 7 13 13 C 1.76199 * 107.21942 * 65.00149 * 10 9 7 14 14 C 1.33392 * 122.53786 * 90.02247 * 13 10 9 15 15 S 1.75887 * 109.59107 * 180.02562 * 14 13 10 16 16 C 1.75887 * 90.97094 * 0.02562 * 15 14 13 17 17 C 1.50699 * 125.20237 * 179.97438 * 16 15 14 18 18 O 1.42901 * 109.46899 * 120.02525 * 17 16 15 19 19 Si 1.86295 * 109.47062 * 0.02562 * 17 16 15 20 20 C 1.33394 * 109.59297 * 359.73185 * 16 15 14 21 21 C 1.53000 * 109.47122 * 299.99683 * 7 6 5 22 22 C 1.52999 * 109.47021 * 305.14717 * 3 2 1 23 23 H 4.18744 * 15.03942 * 0.02562 * 4 2 1 24 24 H 1.09005 * 109.46686 * 180.02562 * 5 3 2 25 25 H 1.08994 * 109.47149 * 300.00001 * 5 3 2 26 26 H 1.08997 * 109.46700 * 299.99733 * 6 5 3 27 27 H 1.08996 * 109.46859 * 179.97438 * 6 5 3 28 28 H 0.96995 * 120.00383 * 84.99764 * 9 7 6 29 29 H 1.07998 * 125.20422 * 359.97438 * 14 13 10 30 30 H 1.08999 * 109.47052 * 240.02505 * 17 16 15 31 31 H 0.96701 * 113.99854 * 299.99728 * 18 17 16 32 32 H 1.48507 * 110.00135 * 58.68089 * 19 17 16 33 33 H 1.48505 * 110.00148 * 179.97438 * 19 17 16 34 34 H 1.07998 * 122.53978 * 180.23857 * 20 16 15 35 35 H 1.08994 * 109.46994 * 180.02562 * 21 7 6 36 36 H 1.08997 * 109.47488 * 300.00657 * 21 7 6 37 37 H 1.09005 * 109.46962 * 179.97438 * 22 3 2 38 38 H 1.09003 * 109.47116 * 60.00084 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.4311 -0.9326 5 6 3.1553 1.4376 0.1294 6 6 2.6451 2.0436 1.4383 7 6 3.1555 1.2134 2.6178 8 1 4.2455 1.2139 2.6178 9 7 2.6664 1.7934 3.8710 10 16 3.6150 2.8542 4.7181 11 8 4.8986 2.2530 4.8181 12 8 2.8550 3.2567 5.8494 13 6 3.8146 4.2899 3.7164 14 6 2.9766 5.3263 3.7728 15 16 3.4925 6.5644 2.6351 16 6 4.8570 5.5754 2.1314 17 6 5.8756 5.9653 1.0915 18 8 7.1758 5.9894 1.6839 19 14 5.4658 7.6557 0.4241 20 6 4.8552 4.4296 2.8144 21 6 2.6461 -0.2235 2.4884 22 6 3.1564 -0.8295 1.1795 23 1 -1.0500 0.0003 -0.0005 24 1 4.2454 1.4381 0.1289 25 1 2.7918 2.0289 -0.7109 26 1 1.5551 2.0431 1.4383 27 1 3.0083 3.0671 1.5307 28 1 1.7871 1.5561 4.2047 29 1 2.1131 5.3943 4.4178 30 1 5.8603 5.2400 0.2780 31 1 7.2626 6.6143 2.4168 32 1 5.4521 8.6483 1.5286 33 1 6.4634 8.0522 -0.6020 34 1 5.6067 3.6671 2.6718 35 1 3.0094 -0.8148 3.3289 36 1 1.5562 -0.2240 2.4884 37 1 4.2464 -0.8294 1.1792 38 1 2.7935 -1.8532 1.0873 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17761048_15065232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:31 Heat of formation + Delta-G solvation = -21.894113 kcal Electronic energy + Delta-G solvation = -24369.189693 eV Core-core repulsion = 20819.217882 eV Total energy + Delta-G solvation = -3549.971811 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.40067 -39.55450 -38.20570 -37.69273 -36.84205 -36.04793 -32.93692 -31.95824 -31.86488 -29.84223 -27.28134 -24.99560 -23.95179 -23.76100 -21.83148 -21.43742 -20.21855 -19.29336 -18.72712 -18.09776 -17.96904 -17.78740 -17.31510 -16.52717 -16.38321 -15.93985 -15.57480 -15.50855 -15.41326 -14.95291 -14.35979 -14.29317 -14.23555 -14.22274 -13.86862 -13.31725 -13.18059 -13.14505 -13.04787 -12.94098 -12.93283 -12.48968 -12.36407 -12.28214 -12.19350 -12.00467 -11.62226 -11.50155 -11.07498 -10.93636 -10.90103 -10.50702 -10.24883 -9.87580 -5.21948 -0.74722 -0.50507 0.27878 0.53925 0.92381 1.12260 1.42118 1.77814 1.92776 1.95485 2.03235 2.73514 3.12154 3.28153 3.33096 3.54900 3.55378 3.68614 3.79276 3.84379 4.00399 4.07712 4.13629 4.23885 4.34354 4.36596 4.39879 4.44378 4.60844 4.67587 4.72926 4.85040 4.95348 4.98269 5.02625 5.05451 5.07538 5.18113 5.21400 5.33940 5.87211 6.19617 6.73027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C 0.016 3.984 4 H 0.095 0.905 5 C -0.109 4.109 6 C -0.142 4.142 7 C 0.149 3.851 8 H 0.095 0.905 9 N -1.110 6.110 10 S 2.707 3.293 11 O -0.949 6.949 12 O -0.957 6.957 13 C -0.687 4.687 14 C -0.082 4.082 15 S 0.158 5.842 16 C -0.227 4.227 17 C -0.032 4.032 18 O -0.521 6.521 19 Si 0.649 3.351 20 C -0.043 4.043 21 C -0.124 4.124 22 C -0.111 4.111 23 H 0.215 0.785 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.420 0.580 29 H 0.185 0.815 30 H 0.130 0.870 31 H 0.379 0.621 32 H -0.240 1.240 33 H -0.233 1.233 34 H 0.157 0.843 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 0.410 -4.702 5.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.174 4.174 3 C -0.002 4.002 4 H 0.113 0.887 5 C -0.148 4.148 6 C -0.181 4.181 7 C 0.042 3.958 8 H 0.113 0.887 9 N -0.869 5.869 10 S 2.794 3.206 11 O -0.939 6.939 12 O -0.947 6.947 13 C -0.786 4.786 14 C -0.221 4.221 15 S 0.422 5.578 16 C -0.345 4.345 17 C -0.144 4.144 18 O -0.328 6.328 19 Si 0.548 3.452 20 C -0.072 4.072 21 C -0.163 4.163 22 C -0.149 4.149 23 H 0.231 0.769 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.255 0.745 29 H 0.202 0.798 30 H 0.148 0.852 31 H 0.227 0.773 32 H -0.164 1.164 33 H -0.156 1.156 34 H 0.174 0.826 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.001 2.189 -4.916 6.161 hybrid contribution 0.341 -0.960 0.870 1.340 sum -2.660 1.229 -4.046 4.996 Atomic orbital electron populations 1.24926 0.95953 1.00731 1.01222 1.22889 0.94126 1.00367 1.00048 1.18422 0.84942 0.96909 0.99885 0.88673 1.21533 1.01181 0.94374 0.97668 1.22151 1.02396 0.99486 0.94094 1.20922 0.99220 0.93612 0.81995 0.88678 1.55601 1.33222 1.60861 1.37218 1.01638 0.73552 0.72827 0.72588 1.93610 1.39921 1.75142 1.85179 1.93615 1.71654 1.82892 1.46555 1.30047 1.06044 1.21770 1.20744 1.25900 1.01335 0.95385 0.99472 1.84424 1.20962 1.19511 1.32912 1.25003 1.03109 0.99427 1.06913 1.24389 0.81908 1.12436 0.95689 1.86644 1.28657 1.64794 1.52661 0.95375 0.90890 0.75171 0.83799 1.19594 0.96492 0.97903 0.93181 1.21810 1.01887 0.94272 0.98303 1.21561 1.01337 0.99182 0.92801 0.76858 0.90423 0.90858 0.90716 0.91045 0.74547 0.79769 0.85244 0.77290 1.16415 1.15561 0.82565 0.90630 0.90860 0.90273 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 0.08 19.25 29.55 0.57 0.65 16 2 C -0.17 0.04 10.06 -37.12 -0.37 -0.33 16 3 C 0.02 -0.03 3.07 -93.41 -0.29 -0.32 16 4 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 5 C -0.11 0.30 5.43 -26.73 -0.15 0.15 16 6 C -0.14 0.32 5.31 -26.73 -0.14 0.18 16 7 C 0.15 -0.26 2.79 -67.93 -0.19 -0.45 16 8 H 0.10 -0.16 7.50 -51.93 -0.39 -0.55 16 9 N -1.11 1.61 5.47 -4.89 -0.03 1.59 16 10 S 2.71 3.46 5.78 -107.50 -0.62 2.84 16 11 O -0.95 -4.11 16.97 -57.17 -0.97 -5.08 16 12 O -0.96 -3.82 17.64 -57.17 -1.01 -4.83 16 13 C -0.69 -0.05 4.97 -41.21 -0.20 -0.26 16 14 C -0.08 0.08 10.70 29.04 0.31 0.39 16 15 S 0.16 -0.24 20.58 -107.50 -2.21 -2.46 16 16 C -0.23 0.19 5.72 -36.00 -0.21 -0.01 16 17 C -0.03 0.04 2.96 36.00 0.11 0.15 16 18 O -0.52 -0.17 12.86 -35.23 -0.45 -0.63 16 19 Si 0.65 -1.12 30.97 -169.99 -5.26 -6.39 16 20 C -0.04 0.00 8.66 -41.21 -0.36 -0.36 16 21 C -0.12 0.23 5.23 -26.73 -0.14 0.10 16 22 C -0.11 0.26 5.43 -26.73 -0.15 0.12 16 23 H 0.21 -0.60 7.80 -54.09 -0.42 -1.03 16 24 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 25 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 26 H 0.07 -0.12 7.23 -51.93 -0.38 -0.49 16 27 H 0.07 -0.18 6.19 -51.93 -0.32 -0.50 16 28 H 0.42 -1.27 8.84 -34.47 -0.30 -1.58 16 29 H 0.19 -0.49 8.00 -52.49 -0.42 -0.91 16 30 H 0.13 -0.35 7.96 -51.93 -0.41 -0.76 16 31 H 0.38 -0.85 8.70 45.56 0.40 -0.45 16 32 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 33 H -0.23 -0.25 7.11 56.52 0.40 0.16 16 34 H 0.16 -0.02 7.96 -52.49 -0.42 -0.44 16 35 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 36 H 0.07 -0.11 7.23 -51.93 -0.38 -0.49 16 37 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 38 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 LS Contribution 340.30 15.07 5.13 5.13 Total: 0.00 -8.95 340.30 -11.41 -20.35 By element: Atomic # 1 Polarization: -5.74 SS G_CDS: -4.78 Total: -10.52 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.20 Total: 0.00 kcal Atomic # 7 Polarization: 1.61 SS G_CDS: -0.03 Total: 1.59 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -2.43 Total: -10.54 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.26 Total: -6.39 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.83 Total: 0.38 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -8.95 -11.41 -20.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_15065232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.543 kcal (2) G-P(sol) polarization free energy of solvation -8.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds