Wall clock time and date at job start Mon Mar 8 2021 14:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09006 * 109.46790 * 65.14730 * 3 2 1 5 5 C 1.52998 * 109.46940 * 185.14580 * 3 2 1 6 6 C 1.53002 * 109.47117 * 60.00275 * 5 3 2 7 7 C 1.53002 * 109.47045 * 59.99861 * 6 5 3 8 8 H 1.08995 * 109.47291 * 59.99838 * 7 6 5 9 9 N 1.46498 * 109.46777 * 180.02562 * 7 6 5 10 10 S 1.65607 * 119.99651 * 264.99801 * 9 7 6 11 11 O 1.42097 * 106.40132 * 311.45977 * 10 9 7 12 12 O 1.42107 * 106.39904 * 178.54249 * 10 9 7 13 13 C 1.76199 * 107.21942 * 65.00149 * 10 9 7 14 14 C 1.33392 * 122.53786 * 90.02247 * 13 10 9 15 15 S 1.75887 * 109.59107 * 180.02562 * 14 13 10 16 16 C 1.75887 * 90.97094 * 0.02562 * 15 14 13 17 17 C 1.50699 * 125.20237 * 179.97438 * 16 15 14 18 18 O 1.42901 * 109.46899 * 120.02525 * 17 16 15 19 19 Si 1.86295 * 109.47062 * 0.02562 * 17 16 15 20 20 C 1.33394 * 109.59297 * 359.73185 * 16 15 14 21 21 C 1.53000 * 109.47122 * 299.99683 * 7 6 5 22 22 C 1.52999 * 109.47021 * 305.14717 * 3 2 1 23 23 H 4.18744 * 15.03942 * 0.02562 * 4 2 1 24 24 H 1.09005 * 109.46686 * 180.02562 * 5 3 2 25 25 H 1.08994 * 109.47149 * 300.00001 * 5 3 2 26 26 H 1.08997 * 109.46700 * 299.99733 * 6 5 3 27 27 H 1.08996 * 109.46859 * 179.97438 * 6 5 3 28 28 H 0.96995 * 120.00383 * 84.99764 * 9 7 6 29 29 H 1.07998 * 125.20422 * 359.97438 * 14 13 10 30 30 H 1.08999 * 109.47052 * 240.02505 * 17 16 15 31 31 H 0.96701 * 113.99854 * 299.99728 * 18 17 16 32 32 H 1.48507 * 110.00135 * 58.68089 * 19 17 16 33 33 H 1.48505 * 110.00148 * 179.97438 * 19 17 16 34 34 H 1.07998 * 122.53978 * 180.23857 * 20 16 15 35 35 H 1.08994 * 109.46994 * 180.02562 * 21 7 6 36 36 H 1.08997 * 109.47488 * 300.00657 * 21 7 6 37 37 H 1.09005 * 109.46962 * 179.97438 * 22 3 2 38 38 H 1.09003 * 109.47116 * 60.00084 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.4311 -0.9326 5 6 3.1553 1.4376 0.1294 6 6 2.6451 2.0436 1.4383 7 6 3.1555 1.2134 2.6178 8 1 4.2455 1.2139 2.6178 9 7 2.6664 1.7934 3.8710 10 16 3.6150 2.8542 4.7181 11 8 4.8986 2.2530 4.8181 12 8 2.8550 3.2567 5.8494 13 6 3.8146 4.2899 3.7164 14 6 2.9766 5.3263 3.7728 15 16 3.4925 6.5644 2.6351 16 6 4.8570 5.5754 2.1314 17 6 5.8756 5.9653 1.0915 18 8 7.1758 5.9894 1.6839 19 14 5.4658 7.6557 0.4241 20 6 4.8552 4.4296 2.8144 21 6 2.6461 -0.2235 2.4884 22 6 3.1564 -0.8295 1.1795 23 1 -1.0500 0.0003 -0.0005 24 1 4.2454 1.4381 0.1289 25 1 2.7918 2.0289 -0.7109 26 1 1.5551 2.0431 1.4383 27 1 3.0083 3.0671 1.5307 28 1 1.7871 1.5561 4.2047 29 1 2.1131 5.3943 4.4178 30 1 5.8603 5.2400 0.2780 31 1 7.2626 6.6143 2.4168 32 1 5.4521 8.6483 1.5286 33 1 6.4634 8.0522 -0.6020 34 1 5.6067 3.6671 2.6718 35 1 3.0094 -0.8148 3.3289 36 1 1.5562 -0.2240 2.4884 37 1 4.2464 -0.8294 1.1792 38 1 2.7935 -1.8532 1.0873 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761048_15065232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:30 Heat of formation + Delta-G solvation = -22.678615 kcal Electronic energy + Delta-G solvation = -24369.223712 eV Core-core repulsion = 20819.217882 eV Total energy + Delta-G solvation = -3550.005829 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.24891 -39.49563 -38.40949 -37.65207 -37.05736 -35.95167 -32.84240 -31.84246 -31.73398 -29.72108 -27.20831 -24.95836 -23.80920 -23.58036 -21.68546 -21.41435 -20.23542 -19.23696 -18.74298 -18.03925 -17.91864 -17.76418 -17.25414 -16.45671 -16.32689 -15.91070 -15.49423 -15.40131 -15.26735 -14.92588 -14.27398 -14.24677 -14.17318 -14.12612 -13.84631 -13.37425 -13.29269 -13.17177 -13.07851 -12.96565 -12.83804 -12.50989 -12.34251 -12.10029 -12.06124 -11.86729 -11.57789 -11.37002 -10.96792 -10.83539 -10.81036 -10.39408 -10.17910 -9.78739 -5.10682 -0.79868 -0.46162 0.35858 0.61012 0.96256 1.21047 1.50269 1.85495 2.00459 2.01935 2.04492 2.66284 3.17674 3.32295 3.49499 3.61951 3.69671 3.84473 3.92029 4.00092 4.18760 4.20949 4.25516 4.35818 4.49829 4.53817 4.57830 4.61093 4.67963 4.84936 4.91404 4.93446 5.06317 5.15331 5.17276 5.23678 5.25691 5.33980 5.39720 5.51304 6.02030 6.35785 6.81907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.188 4.188 3 C 0.014 3.986 4 H 0.103 0.897 5 C -0.108 4.108 6 C -0.139 4.139 7 C 0.147 3.853 8 H 0.095 0.905 9 N -1.100 6.100 10 S 2.722 3.278 11 O -0.984 6.984 12 O -0.988 6.988 13 C -0.691 4.691 14 C -0.086 4.086 15 S 0.187 5.813 16 C -0.228 4.228 17 C -0.037 4.037 18 O -0.540 6.540 19 Si 0.719 3.281 20 C -0.053 4.053 21 C -0.123 4.123 22 C -0.110 4.110 23 H 0.230 0.770 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.427 0.573 29 H 0.200 0.800 30 H 0.145 0.855 31 H 0.388 0.612 32 H -0.265 1.265 33 H -0.273 1.273 34 H 0.154 0.846 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 0.726 -5.442 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.188 4.188 3 C -0.004 4.004 4 H 0.121 0.879 5 C -0.146 4.146 6 C -0.178 4.178 7 C 0.040 3.960 8 H 0.113 0.887 9 N -0.862 5.862 10 S 2.811 3.189 11 O -0.974 6.974 12 O -0.978 6.978 13 C -0.793 4.793 14 C -0.225 4.225 15 S 0.450 5.550 16 C -0.346 4.346 17 C -0.149 4.149 18 O -0.348 6.348 19 Si 0.621 3.379 20 C -0.082 4.082 21 C -0.162 4.162 22 C -0.148 4.148 23 H 0.247 0.753 24 H 0.108 0.892 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.264 0.736 29 H 0.217 0.783 30 H 0.162 0.838 31 H 0.237 0.763 32 H -0.190 1.190 33 H -0.198 1.198 34 H 0.172 0.828 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.419 2.474 -5.631 7.037 hybrid contribution 0.466 -1.006 1.056 1.531 sum -2.953 1.468 -4.575 5.640 Atomic orbital electron populations 1.25514 0.96830 1.00798 1.01278 1.23406 0.94945 1.00389 1.00073 1.18530 0.84091 0.97472 1.00294 0.87921 1.21551 1.01926 0.93845 0.97315 1.22114 1.01962 0.99628 0.94063 1.21022 0.99301 0.93799 0.81840 0.88684 1.55349 1.33272 1.60334 1.37216 1.00841 0.72685 0.72971 0.72384 1.93563 1.41728 1.76132 1.85954 1.93566 1.72099 1.83506 1.48649 1.29766 1.06858 1.21513 1.21144 1.26180 1.01538 0.95229 0.99565 1.84349 1.20052 1.18522 1.32029 1.25080 1.03432 0.99297 1.06773 1.24596 0.81232 1.13227 0.95847 1.86618 1.29561 1.65385 1.53241 0.94601 0.89241 0.73439 0.80642 1.19617 0.96602 0.98348 0.93584 1.21801 1.01636 0.94139 0.98629 1.21568 1.01963 0.98930 0.92313 0.75348 0.89185 0.90660 0.91344 0.90628 0.73598 0.78317 0.83779 0.76279 1.19018 1.19796 0.82807 0.90853 0.91261 0.89216 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 0.15 19.25 74.32 1.43 1.58 16 2 C -0.19 0.08 10.06 31.13 0.31 0.40 16 3 C 0.01 -0.06 3.07 -12.60 -0.04 -0.10 16 4 H 0.10 -0.61 8.14 -2.38 -0.02 -0.63 16 5 C -0.11 0.66 5.43 30.59 0.17 0.83 16 6 C -0.14 0.67 5.31 30.60 0.16 0.83 16 7 C 0.15 -0.49 2.79 44.99 0.13 -0.37 16 8 H 0.10 -0.30 7.50 -2.39 -0.02 -0.32 16 9 N -1.10 2.63 5.47 -169.39 -0.93 1.71 16 10 S 2.72 9.22 5.78 -56.49 -0.33 8.90 16 11 O -0.98 -9.73 16.97 -128.00 -2.17 -11.90 16 12 O -0.99 -8.82 17.64 -128.00 -2.26 -11.07 16 13 C -0.69 -0.16 4.97 21.22 0.11 -0.06 16 14 C -0.09 0.20 10.70 66.72 0.71 0.92 16 15 S 0.19 -0.76 20.58 -56.49 -1.16 -1.92 16 16 C -0.23 0.53 5.72 24.59 0.14 0.67 16 17 C -0.04 0.12 2.96 71.24 0.21 0.34 16 18 O -0.54 -0.27 12.86 -148.98 -1.92 -2.19 16 19 Si 0.72 -2.74 30.97 68.60 2.12 -0.62 16 20 C -0.05 0.01 8.66 21.22 0.18 0.19 16 21 C -0.12 0.44 5.23 30.59 0.16 0.60 16 22 C -0.11 0.54 5.43 30.59 0.17 0.70 16 23 H 0.23 -1.30 7.80 -4.42 -0.03 -1.34 16 24 H 0.09 -0.76 8.14 -2.38 -0.02 -0.78 16 25 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.07 -0.22 7.23 -2.39 -0.02 -0.24 16 27 H 0.08 -0.42 6.19 -2.39 -0.01 -0.43 16 28 H 0.43 -2.36 8.84 -96.75 -0.85 -3.22 16 29 H 0.20 -1.18 8.00 -2.91 -0.02 -1.20 16 30 H 0.14 -0.93 7.96 -2.39 -0.02 -0.95 16 31 H 0.39 -1.72 8.70 -74.06 -0.64 -2.37 16 32 H -0.26 -0.04 7.11 99.48 0.71 0.67 16 33 H -0.27 -0.76 7.11 99.48 0.71 -0.06 16 34 H 0.15 0.01 7.96 -2.91 -0.02 -0.01 16 35 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.07 -0.19 7.23 -2.39 -0.02 -0.20 16 37 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 38 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: 0.00 -20.19 340.30 -3.17 -23.35 By element: Atomic # 1 Polarization: -12.41 SS G_CDS: -0.37 Total: -12.78 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 3.84 Total: 6.53 kcal Atomic # 7 Polarization: 2.63 SS G_CDS: -0.93 Total: 1.71 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -6.35 Total: -25.17 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.12 Total: -0.62 kcal Atomic # 16 Polarization: 8.47 SS G_CDS: -1.49 Total: 6.98 kcal Total: -20.19 -3.17 -23.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_15065232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.676 kcal (2) G-P(sol) polarization free energy of solvation -20.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds