Wall clock time and date at job start Mon Mar 8 2021 14:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47364 * 128.95483 * 3 2 1 5 5 C 1.53000 * 109.47258 * 248.95148 * 3 2 1 6 6 C 1.52996 * 109.47264 * 60.00157 * 5 3 2 7 7 C 1.53002 * 109.47045 * 59.99997 * 6 5 3 8 8 H 1.09001 * 109.47234 * 60.00017 * 7 6 5 9 9 N 1.46505 * 109.47119 * 180.02562 * 7 6 5 10 10 S 1.65600 * 119.99828 * 265.00172 * 9 7 6 11 11 O 1.42101 * 106.40101 * 311.46014 * 10 9 7 12 12 O 1.42101 * 106.40374 * 178.54117 * 10 9 7 13 13 C 1.76200 * 107.21892 * 64.99708 * 10 9 7 14 14 C 1.33393 * 122.53788 * 87.25569 * 13 10 9 15 15 C 1.50697 * 125.20162 * 0.02562 * 14 13 10 16 16 S 1.75878 * 109.59360 * 179.97438 * 14 13 10 17 17 C 1.75883 * 90.97318 * 359.83171 * 16 14 13 18 18 C 1.50694 * 125.20890 * 180.17931 * 17 16 14 19 19 C 1.33396 * 109.58900 * 0.29764 * 17 16 14 20 20 C 1.50701 * 122.53402 * 179.90479 * 19 17 16 21 21 O 1.42904 * 109.47069 * 81.36375 * 20 19 17 22 22 Si 1.86296 * 109.47711 * 321.35598 * 20 19 17 23 23 C 1.53000 * 109.47092 * 300.00108 * 7 6 5 24 24 C 1.53000 * 109.47537 * 8.95440 * 3 2 1 25 25 H 4.18739 * 15.03728 * 359.97438 * 4 2 1 26 26 H 1.09005 * 109.47454 * 179.97438 * 5 3 2 27 27 H 1.09003 * 109.46898 * 299.99919 * 5 3 2 28 28 H 1.09001 * 109.47091 * 299.99926 * 6 5 3 29 29 H 1.08996 * 109.47729 * 180.02562 * 6 5 3 30 30 H 0.97001 * 119.99963 * 85.00013 * 9 7 6 31 31 H 1.08997 * 109.47741 * 84.38776 * 15 14 13 32 32 H 1.09006 * 109.46918 * 204.38923 * 15 14 13 33 33 H 1.08999 * 109.47318 * 324.38152 * 15 14 13 34 34 H 1.09004 * 109.47078 * 273.37146 * 18 17 16 35 35 H 1.09003 * 109.46792 * 33.36839 * 18 17 16 36 36 H 1.09000 * 109.47851 * 153.36844 * 18 17 16 37 37 H 1.09005 * 109.46965 * 201.35621 * 20 19 17 38 38 H 0.96695 * 113.99397 * 299.99377 * 21 20 19 39 39 H 1.48492 * 110.00211 * 185.78005 * 22 20 19 40 40 H 1.48502 * 110.00078 * 307.10098 * 22 20 19 41 41 H 1.09003 * 109.46898 * 180.02562 * 23 7 6 42 42 H 1.08996 * 109.47268 * 299.99669 * 23 7 6 43 43 H 1.08998 * 109.47725 * 180.02562 * 24 3 2 44 44 H 1.08997 * 109.47185 * 59.99621 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0090 0.6469 -0.7991 5 6 3.1557 0.5190 1.3462 6 6 2.6462 -0.3881 2.4680 7 6 3.1569 -1.8128 2.2436 8 1 4.2469 -1.8123 2.2435 9 7 2.6685 -2.6815 3.3174 10 16 3.6176 -2.9730 4.6428 11 8 4.9012 -3.3277 4.1469 12 8 2.8583 -3.8107 5.5037 13 6 3.8172 -1.4403 5.4887 14 6 2.9499 -1.0088 6.4058 15 6 1.7092 -1.7444 6.8423 16 16 3.4768 0.5494 7.0287 17 6 4.8895 0.5241 5.9813 18 6 5.9415 1.6011 5.9152 19 6 4.8860 -0.5931 5.2525 20 6 5.9672 -0.9117 4.2521 21 8 7.0981 -1.4607 4.9316 22 14 6.4719 0.6471 3.3655 23 6 2.6471 -2.3311 0.8973 24 6 3.1567 -1.4240 -0.2245 25 1 -1.0500 -0.0008 0.0003 26 1 4.2458 0.5190 1.3464 27 1 2.7919 1.5340 1.5061 28 1 1.5562 -0.3886 2.4681 29 1 3.0090 -0.0186 3.4272 30 1 1.7892 -3.0859 3.2521 31 1 1.9689 -2.4689 7.6141 32 1 0.9861 -1.0326 7.2406 33 1 1.2751 -2.2635 5.9878 34 1 5.6303 2.3700 5.2081 35 1 6.0690 2.0454 6.9024 36 1 6.8860 1.1669 5.5875 37 1 5.5912 -1.6355 3.5289 38 1 7.4853 -0.8697 5.5917 39 1 7.4351 0.3260 2.2820 40 1 5.2751 1.3192 2.7985 41 1 3.0105 -3.3463 0.7376 42 1 1.5571 -2.3317 0.8974 43 1 4.2467 -1.4236 -0.2241 44 1 2.7935 -1.7933 -1.1836 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17761048_15065288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:35 Heat of formation + Delta-G solvation = -18.190243 kcal Electronic energy + Delta-G solvation = -29951.205991 eV Core-core repulsion = 26090.319554 eV Total energy + Delta-G solvation = -3860.886437 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.095 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.64255 -40.15626 -38.38034 -37.02992 -36.80306 -36.09473 -34.40248 -32.98036 -32.02702 -31.02739 -29.88001 -28.03032 -26.00522 -24.02163 -23.87501 -23.18252 -21.93051 -20.77795 -20.08289 -19.06953 -18.64422 -18.17384 -17.92408 -17.54090 -16.93927 -16.40429 -16.07540 -16.02337 -15.63422 -15.61585 -15.52257 -15.17335 -14.68344 -14.45448 -14.36496 -14.30220 -14.25292 -14.05449 -13.73382 -13.45146 -13.40286 -13.20602 -13.17059 -13.02792 -12.92661 -12.75019 -12.62973 -12.36540 -12.26349 -12.11222 -11.91634 -11.65507 -11.61470 -11.46733 -11.09441 -10.97510 -10.54898 -10.34533 -10.00189 -9.54006 -4.94274 -0.70573 -0.44553 0.34789 0.66381 0.85329 1.29115 1.58880 1.89017 1.91801 1.96005 2.04146 2.74491 3.25093 3.28315 3.44245 3.47892 3.54469 3.63362 3.68582 3.78194 3.93224 3.94838 3.95993 4.02040 4.12477 4.19935 4.26207 4.29590 4.33867 4.37376 4.41842 4.48114 4.57661 4.63593 4.67108 4.69655 4.86166 4.90224 4.93261 4.99653 5.00490 5.02826 5.12896 5.16348 5.17160 5.28946 5.84664 6.67235 6.69293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.016 3.984 4 H 0.096 0.904 5 C -0.113 4.113 6 C -0.143 4.143 7 C 0.148 3.852 8 H 0.088 0.912 9 N -1.112 6.112 10 S 2.698 3.302 11 O -0.936 6.936 12 O -0.954 6.954 13 C -0.678 4.678 14 C -0.049 4.049 15 C -0.109 4.109 16 S 0.164 5.836 17 C -0.192 4.192 18 C -0.094 4.094 19 C -0.065 4.065 20 C -0.070 4.070 21 O -0.517 6.517 22 Si 0.631 3.369 23 C -0.123 4.123 24 C -0.112 4.112 25 H 0.215 0.785 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.419 0.581 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.368 0.632 39 H -0.242 1.242 40 H -0.234 1.234 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 6.255 0.216 6.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.174 4.174 3 C -0.002 4.002 4 H 0.114 0.886 5 C -0.150 4.150 6 C -0.182 4.182 7 C 0.041 3.959 8 H 0.106 0.894 9 N -0.871 5.871 10 S 2.786 3.214 11 O -0.925 6.925 12 O -0.944 6.944 13 C -0.777 4.777 14 C -0.170 4.170 15 C -0.167 4.167 16 S 0.430 5.570 17 C -0.310 4.310 18 C -0.151 4.151 19 C -0.076 4.076 20 C -0.183 4.183 21 O -0.321 6.321 22 Si 0.531 3.469 23 C -0.162 4.162 24 C -0.150 4.150 25 H 0.232 0.768 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.254 0.746 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.214 0.786 39 H -0.166 1.166 40 H -0.158 1.158 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.611 6.513 0.431 6.724 hybrid contribution -0.718 -0.850 -0.686 1.307 sum -2.329 5.663 -0.255 6.129 Atomic orbital electron populations 1.24921 0.95923 1.00798 1.00968 1.22831 0.94040 1.00348 1.00227 1.18417 0.85102 0.97947 0.98691 0.88599 1.21672 1.00935 0.99470 0.92971 1.22153 1.02583 0.94333 0.99132 1.20931 0.98771 0.89011 0.87154 0.89383 1.55677 1.33308 1.63298 1.34843 1.01874 0.73661 0.73153 0.72700 1.93621 1.39043 1.80610 1.79253 1.93606 1.71476 1.63969 1.65336 1.29521 1.04742 1.26445 1.17013 1.24560 0.98748 0.97643 0.96078 1.20852 0.91827 0.99890 1.04175 1.84367 1.17344 1.15631 1.39632 1.24323 1.02265 1.00973 1.03406 1.20317 0.95012 0.95814 1.03911 1.18632 0.96357 0.92859 0.99770 1.25376 0.86211 1.09430 0.97290 1.86692 1.43452 1.45119 1.56811 0.95255 0.85425 0.81949 0.84270 1.21818 1.02037 0.99833 0.92558 1.21579 1.01268 0.93177 0.99000 0.76771 0.90784 0.90777 0.90385 0.91158 0.74568 0.87871 0.89956 0.89203 0.89042 0.88807 0.89180 0.85145 0.78629 1.16649 1.15755 0.90421 0.90608 0.90438 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.04 19.25 29.55 0.57 0.53 16 2 C -0.17 -0.10 10.06 -37.12 -0.37 -0.47 16 3 C 0.02 -0.01 3.07 -93.41 -0.29 -0.30 16 4 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 5 C -0.11 0.08 5.15 -26.73 -0.14 -0.06 16 6 C -0.14 0.07 5.30 -26.73 -0.14 -0.08 16 7 C 0.15 -0.02 2.79 -67.93 -0.19 -0.21 16 8 H 0.09 0.04 5.68 -51.93 -0.29 -0.26 16 9 N -1.11 0.04 5.47 -4.89 -0.03 0.01 16 10 S 2.70 8.06 5.25 -107.50 -0.56 7.50 16 11 O -0.94 -5.57 14.09 -57.38 -0.81 -6.38 16 12 O -0.95 -4.57 15.40 -57.17 -0.88 -5.45 16 13 C -0.68 -1.25 4.90 -41.21 -0.20 -1.46 16 14 C -0.05 -0.03 6.49 -36.00 -0.23 -0.27 16 15 C -0.11 0.06 8.87 36.00 0.32 0.38 16 16 S 0.16 -0.13 23.31 -107.50 -2.51 -2.64 16 17 C -0.19 0.16 6.13 -36.00 -0.22 -0.06 16 18 C -0.09 0.39 8.17 36.00 0.29 0.68 16 19 C -0.07 -0.07 4.09 -106.25 -0.43 -0.51 16 20 C -0.07 -0.13 1.92 36.01 0.07 -0.06 16 21 O -0.52 -1.37 12.86 -35.23 -0.45 -1.83 16 22 Si 0.63 -0.42 26.10 -169.99 -4.44 -4.86 16 23 C -0.12 0.11 5.23 -26.73 -0.14 -0.03 16 24 C -0.11 0.14 5.43 -26.73 -0.15 0.00 16 25 H 0.22 -0.52 7.80 -54.09 -0.42 -0.94 16 26 H 0.07 -0.06 6.03 -51.93 -0.31 -0.38 16 27 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.08 -0.03 7.23 -51.93 -0.38 -0.40 16 29 H 0.07 -0.02 6.35 -51.93 -0.33 -0.35 16 30 H 0.42 -0.86 8.84 -34.47 -0.30 -1.16 16 31 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 33 H 0.09 -0.07 6.79 -51.93 -0.35 -0.42 16 34 H 0.09 -0.47 6.99 -51.93 -0.36 -0.83 16 35 H 0.09 -0.50 8.14 -51.93 -0.42 -0.93 16 36 H 0.09 -0.51 4.38 -51.93 -0.23 -0.74 16 37 H 0.13 0.42 3.25 -51.93 -0.17 0.25 16 38 H 0.37 -0.74 7.85 45.56 0.36 -0.38 16 39 H -0.24 -0.55 7.11 56.52 0.40 -0.15 16 40 H -0.23 0.10 5.55 56.52 0.31 0.41 16 41 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.08 -0.07 7.23 -51.93 -0.38 -0.44 16 43 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 44 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 LS Contribution 355.56 15.07 5.36 5.36 Total: 0.00 -9.24 355.56 -11.41 -20.65 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: -5.84 Total: -10.44 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.25 Total: -1.91 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: -0.03 Total: 0.01 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -2.14 Total: -13.66 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: -4.44 Total: -4.86 kcal Atomic # 16 Polarization: 7.93 SS G_CDS: -3.07 Total: 4.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -9.24 -11.41 -20.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_15065288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.457 kcal (2) G-P(sol) polarization free energy of solvation -9.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds