Wall clock time and date at job start Mon Mar 8 2021 14:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47364 * 128.95483 * 3 2 1 5 5 C 1.53000 * 109.47258 * 248.95148 * 3 2 1 6 6 C 1.52996 * 109.47264 * 60.00157 * 5 3 2 7 7 C 1.53002 * 109.47045 * 59.99997 * 6 5 3 8 8 H 1.09001 * 109.47234 * 60.00017 * 7 6 5 9 9 N 1.46505 * 109.47119 * 180.02562 * 7 6 5 10 10 S 1.65600 * 119.99828 * 265.00172 * 9 7 6 11 11 O 1.42101 * 106.40101 * 311.46014 * 10 9 7 12 12 O 1.42101 * 106.40374 * 178.54117 * 10 9 7 13 13 C 1.76200 * 107.21892 * 64.99708 * 10 9 7 14 14 C 1.33393 * 122.53788 * 87.25569 * 13 10 9 15 15 C 1.50697 * 125.20162 * 0.02562 * 14 13 10 16 16 S 1.75878 * 109.59360 * 179.97438 * 14 13 10 17 17 C 1.75883 * 90.97318 * 359.83171 * 16 14 13 18 18 C 1.50694 * 125.20890 * 180.17931 * 17 16 14 19 19 C 1.33396 * 109.58900 * 0.29764 * 17 16 14 20 20 C 1.50701 * 122.53402 * 179.90479 * 19 17 16 21 21 O 1.42904 * 109.47069 * 81.36375 * 20 19 17 22 22 Si 1.86296 * 109.47711 * 321.35598 * 20 19 17 23 23 C 1.53000 * 109.47092 * 300.00108 * 7 6 5 24 24 C 1.53000 * 109.47537 * 8.95440 * 3 2 1 25 25 H 4.18739 * 15.03728 * 359.97438 * 4 2 1 26 26 H 1.09005 * 109.47454 * 179.97438 * 5 3 2 27 27 H 1.09003 * 109.46898 * 299.99919 * 5 3 2 28 28 H 1.09001 * 109.47091 * 299.99926 * 6 5 3 29 29 H 1.08996 * 109.47729 * 180.02562 * 6 5 3 30 30 H 0.97001 * 119.99963 * 85.00013 * 9 7 6 31 31 H 1.08997 * 109.47741 * 84.38776 * 15 14 13 32 32 H 1.09006 * 109.46918 * 204.38923 * 15 14 13 33 33 H 1.08999 * 109.47318 * 324.38152 * 15 14 13 34 34 H 1.09004 * 109.47078 * 273.37146 * 18 17 16 35 35 H 1.09003 * 109.46792 * 33.36839 * 18 17 16 36 36 H 1.09000 * 109.47851 * 153.36844 * 18 17 16 37 37 H 1.09005 * 109.46965 * 201.35621 * 20 19 17 38 38 H 0.96695 * 113.99397 * 299.99377 * 21 20 19 39 39 H 1.48492 * 110.00211 * 185.78005 * 22 20 19 40 40 H 1.48502 * 110.00078 * 307.10098 * 22 20 19 41 41 H 1.09003 * 109.46898 * 180.02562 * 23 7 6 42 42 H 1.08996 * 109.47268 * 299.99669 * 23 7 6 43 43 H 1.08998 * 109.47725 * 180.02562 * 24 3 2 44 44 H 1.08997 * 109.47185 * 59.99621 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0090 0.6469 -0.7991 5 6 3.1557 0.5190 1.3462 6 6 2.6462 -0.3881 2.4680 7 6 3.1569 -1.8128 2.2436 8 1 4.2469 -1.8123 2.2435 9 7 2.6685 -2.6815 3.3174 10 16 3.6176 -2.9730 4.6428 11 8 4.9012 -3.3277 4.1469 12 8 2.8583 -3.8107 5.5037 13 6 3.8172 -1.4403 5.4887 14 6 2.9499 -1.0088 6.4058 15 6 1.7092 -1.7444 6.8423 16 16 3.4768 0.5494 7.0287 17 6 4.8895 0.5241 5.9813 18 6 5.9415 1.6011 5.9152 19 6 4.8860 -0.5931 5.2525 20 6 5.9672 -0.9117 4.2521 21 8 7.0981 -1.4607 4.9316 22 14 6.4719 0.6471 3.3655 23 6 2.6471 -2.3311 0.8973 24 6 3.1567 -1.4240 -0.2245 25 1 -1.0500 -0.0008 0.0003 26 1 4.2458 0.5190 1.3464 27 1 2.7919 1.5340 1.5061 28 1 1.5562 -0.3886 2.4681 29 1 3.0090 -0.0186 3.4272 30 1 1.7892 -3.0859 3.2521 31 1 1.9689 -2.4689 7.6141 32 1 0.9861 -1.0326 7.2406 33 1 1.2751 -2.2635 5.9878 34 1 5.6303 2.3700 5.2081 35 1 6.0690 2.0454 6.9024 36 1 6.8860 1.1669 5.5875 37 1 5.5912 -1.6355 3.5289 38 1 7.4853 -0.8697 5.5917 39 1 7.4351 0.3260 2.2820 40 1 5.2751 1.3192 2.7985 41 1 3.0105 -3.3463 0.7376 42 1 1.5571 -2.3317 0.8974 43 1 4.2467 -1.4236 -0.2241 44 1 2.7935 -1.7933 -1.1836 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761048_15065288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:33 Heat of formation + Delta-G solvation = -19.289375 kcal Electronic energy + Delta-G solvation = -29951.253653 eV Core-core repulsion = 26090.319554 eV Total energy + Delta-G solvation = -3860.934099 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.095 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.62490 -40.13405 -38.64627 -37.15087 -37.09311 -36.10960 -34.31357 -32.96306 -31.96830 -30.88088 -29.86753 -28.05525 -25.91778 -23.99546 -23.82324 -23.20609 -21.90510 -20.84239 -20.16300 -19.14377 -18.67846 -18.19180 -17.97251 -17.57148 -16.98858 -16.46687 -16.13883 -16.00192 -15.68098 -15.57868 -15.48721 -15.16954 -14.55480 -14.44668 -14.36150 -14.29323 -14.18078 -13.99399 -13.69418 -13.45197 -13.40360 -13.34716 -13.23566 -13.13241 -12.93214 -12.73619 -12.64319 -12.34876 -12.22910 -12.11985 -11.92711 -11.73798 -11.59997 -11.45858 -11.07483 -10.93165 -10.55167 -10.38804 -9.95077 -9.49113 -4.90256 -0.85692 -0.45180 0.39919 0.68792 0.84359 1.28468 1.62603 1.90603 1.92179 1.95159 1.97325 2.56336 3.13653 3.34724 3.47245 3.50081 3.59483 3.66974 3.74715 3.83822 4.00025 4.02125 4.04353 4.10917 4.19774 4.24959 4.35438 4.40669 4.42782 4.47650 4.59812 4.66372 4.68355 4.69594 4.74224 4.87023 4.95716 4.97858 5.01277 5.03798 5.05371 5.09179 5.18521 5.22379 5.28454 5.34347 5.89372 6.72459 6.79960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.192 4.192 3 C 0.015 3.985 4 H 0.105 0.895 5 C -0.113 4.113 6 C -0.139 4.139 7 C 0.146 3.854 8 H 0.080 0.920 9 N -1.103 6.103 10 S 2.704 3.296 11 O -0.973 6.973 12 O -0.980 6.980 13 C -0.688 4.688 14 C -0.063 4.063 15 C -0.115 4.115 16 S 0.197 5.803 17 C -0.182 4.182 18 C -0.105 4.105 19 C -0.087 4.087 20 C -0.093 4.093 21 O -0.544 6.544 22 Si 0.717 3.283 23 C -0.122 4.122 24 C -0.112 4.112 25 H 0.234 0.766 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.428 0.572 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.385 0.615 39 H -0.289 1.289 40 H -0.233 1.233 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 8.433 0.587 8.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.192 4.192 3 C -0.002 4.002 4 H 0.123 0.877 5 C -0.150 4.150 6 C -0.178 4.178 7 C 0.039 3.961 8 H 0.098 0.902 9 N -0.864 5.864 10 S 2.794 3.206 11 O -0.963 6.963 12 O -0.971 6.971 13 C -0.790 4.790 14 C -0.184 4.184 15 C -0.173 4.173 16 S 0.464 5.536 17 C -0.300 4.300 18 C -0.162 4.162 19 C -0.098 4.098 20 C -0.203 4.203 21 O -0.351 6.351 22 Si 0.618 3.382 23 C -0.161 4.161 24 C -0.150 4.150 25 H 0.250 0.750 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.265 0.735 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.234 0.766 39 H -0.216 1.216 40 H -0.157 1.157 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.967 8.653 0.821 8.912 hybrid contribution -0.623 -1.530 -0.774 1.825 sum -2.590 7.123 0.047 7.579 Atomic orbital electron populations 1.25534 0.96750 1.00462 1.00623 1.23215 0.94685 1.00719 1.00603 1.18471 0.84646 0.98222 0.98905 0.87712 1.21684 1.00977 0.99492 0.92897 1.22108 1.02458 0.93937 0.99264 1.21005 0.98446 0.89369 0.87244 0.90185 1.55408 1.33362 1.63453 1.34160 1.01307 0.72928 0.73537 0.72789 1.93582 1.40875 1.81875 1.79937 1.93562 1.71768 1.65544 1.66190 1.29285 1.05926 1.25926 1.17826 1.24754 0.98935 0.98745 0.96010 1.20941 0.92056 1.00325 1.04021 1.84235 1.16763 1.13878 1.38739 1.24758 1.02589 1.00813 1.01848 1.20622 0.94552 0.95359 1.05643 1.18592 0.96390 0.93817 1.00985 1.25699 0.86418 1.10605 0.97574 1.86633 1.44011 1.46782 1.57666 0.94375 0.82730 0.79606 0.81527 1.21818 1.02085 0.99925 0.92313 1.21599 1.01626 0.92946 0.98871 0.74982 0.90679 0.90474 0.90438 0.91244 0.73503 0.88554 0.87783 0.89423 0.87188 0.86763 0.87649 0.87345 0.76644 1.21607 1.15728 0.90541 0.90471 0.89902 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.01 19.25 74.32 1.43 1.42 16 2 C -0.19 -0.19 10.06 31.13 0.31 0.12 16 3 C 0.02 -0.02 3.07 -12.60 -0.04 -0.06 16 4 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 5 C -0.11 0.16 5.15 30.59 0.16 0.32 16 6 C -0.14 0.08 5.30 30.59 0.16 0.24 16 7 C 0.15 0.14 2.79 44.99 0.13 0.26 16 8 H 0.08 0.22 5.68 -2.39 -0.01 0.21 16 9 N -1.10 -1.78 5.47 -169.37 -0.93 -2.71 16 10 S 2.70 22.07 5.25 -56.49 -0.30 21.77 16 11 O -0.97 -14.43 14.09 -127.80 -1.80 -16.23 16 12 O -0.98 -11.68 15.40 -128.00 -1.97 -13.66 16 13 C -0.69 -3.25 4.90 21.22 0.10 -3.14 16 14 C -0.06 -0.10 6.49 24.59 0.16 0.06 16 15 C -0.12 0.06 8.87 71.23 0.63 0.69 16 16 S 0.20 -0.56 23.31 -56.49 -1.32 -1.88 16 17 C -0.18 0.51 6.13 24.59 0.15 0.66 16 18 C -0.11 1.12 8.17 71.23 0.58 1.70 16 19 C -0.09 -0.22 4.09 -20.92 -0.09 -0.31 16 20 C -0.09 -0.43 1.92 71.24 0.14 -0.29 16 21 O -0.54 -3.60 12.86 -148.98 -1.92 -5.51 16 22 Si 0.72 -1.12 26.10 68.60 1.79 0.67 16 23 C -0.12 0.10 5.23 30.60 0.16 0.26 16 24 C -0.11 0.24 5.43 30.60 0.17 0.41 16 25 H 0.23 -1.27 7.80 -4.42 -0.03 -1.31 16 26 H 0.07 -0.13 6.03 -2.38 -0.01 -0.14 16 27 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.08 -0.03 7.23 -2.39 -0.02 -0.05 16 29 H 0.07 -0.02 6.35 -2.39 -0.02 -0.03 16 30 H 0.43 -1.08 8.84 -96.74 -0.85 -1.93 16 31 H 0.10 0.07 8.14 -2.39 -0.02 0.06 16 32 H 0.10 -0.58 8.14 -2.38 -0.02 -0.60 16 33 H 0.09 -0.03 6.79 -2.39 -0.02 -0.05 16 34 H 0.11 -1.48 6.99 -2.38 -0.02 -1.49 16 35 H 0.11 -1.59 8.14 -2.39 -0.02 -1.61 16 36 H 0.11 -1.41 4.38 -2.39 -0.01 -1.42 16 37 H 0.11 0.95 3.25 -2.38 -0.01 0.95 16 38 H 0.38 -1.38 7.85 -74.06 -0.58 -1.96 16 39 H -0.29 -1.69 7.11 99.48 0.71 -0.99 16 40 H -0.23 0.47 5.55 99.48 0.55 1.03 16 41 H 0.08 -0.06 8.14 -2.39 -0.02 -0.07 16 42 H 0.08 -0.09 7.23 -2.39 -0.02 -0.10 16 43 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 44 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -23.04 355.56 -2.78 -25.82 By element: Atomic # 1 Polarization: -10.13 SS G_CDS: -0.50 Total: -10.62 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 4.16 Total: 2.34 kcal Atomic # 7 Polarization: -1.78 SS G_CDS: -0.93 Total: -2.71 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -5.69 Total: -35.40 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 1.79 Total: 0.67 kcal Atomic # 16 Polarization: 21.51 SS G_CDS: -1.61 Total: 19.90 kcal Total: -23.04 -2.78 -25.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_15065288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.529 kcal (2) G-P(sol) polarization free energy of solvation -23.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds