Wall clock time and date at job start Mon Mar 8 2021 14:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08996 * 109.46822 * 213.27005 * 3 2 1 5 5 C 1.52996 * 109.47247 * 333.27354 * 3 2 1 6 6 C 1.53000 * 109.47393 * 59.99676 * 5 3 2 7 7 C 1.53005 * 109.46847 * 59.99886 * 6 5 3 8 8 H 1.09002 * 109.46949 * 60.00004 * 7 6 5 9 9 N 1.46500 * 109.47156 * 179.97438 * 7 6 5 10 10 S 1.65600 * 120.00088 * 215.19874 * 9 7 6 11 11 O 1.42100 * 106.39999 * 181.13574 * 10 9 7 12 12 O 1.42099 * 106.39979 * 314.05521 * 10 9 7 13 13 C 1.76200 * 107.21958 * 67.59431 * 10 9 7 14 14 C 1.38207 * 120.00164 * 166.43473 * 13 10 9 15 15 C 1.50700 * 120.00132 * 359.97438 * 14 13 10 16 16 O 1.42903 * 109.46867 * 76.19578 * 15 14 13 17 17 Si 1.86298 * 109.47565 * 196.19993 * 15 14 13 18 18 C 1.38261 * 120.00107 * 180.02562 * 14 13 10 19 19 C 1.38218 * 119.99838 * 359.97438 * 18 14 13 20 20 C 1.38253 * 119.99921 * 359.97261 * 19 18 14 21 21 C 1.38217 * 120.00051 * 359.81536 * 20 19 18 22 22 C 1.52996 * 109.47217 * 300.00221 * 7 6 5 23 23 C 1.53000 * 109.47393 * 60.00112 * 22 7 6 24 24 H 4.18742 * 15.03876 * 0.02562 * 4 2 1 25 25 H 1.09000 * 109.46849 * 299.99887 * 5 3 2 26 26 H 1.09002 * 109.46983 * 180.02562 * 5 3 2 27 27 H 1.09000 * 109.47296 * 179.97438 * 6 5 3 28 28 H 1.08992 * 109.47315 * 300.00240 * 6 5 3 29 29 H 0.97002 * 119.99636 * 35.19225 * 9 7 6 30 30 H 1.09005 * 109.46830 * 316.20321 * 15 14 13 31 31 H 0.96692 * 114.00320 * 305.06032 * 16 15 14 32 32 H 1.48497 * 109.99841 * 298.68115 * 17 15 14 33 33 H 1.48500 * 109.99766 * 60.00036 * 17 15 14 34 34 H 1.07999 * 119.99987 * 179.97438 * 18 14 13 35 35 H 1.07997 * 119.99469 * 179.97438 * 19 18 14 36 36 H 1.08005 * 119.99459 * 179.97438 * 20 19 18 37 37 H 1.08006 * 119.99706 * 180.23026 * 21 20 19 38 38 H 1.09002 * 109.46983 * 299.99761 * 22 7 6 39 39 H 1.09000 * 109.46849 * 179.97438 * 22 7 6 40 40 H 1.09000 * 109.47296 * 180.02562 * 23 22 7 41 41 H 1.08992 * 109.47315 * 59.99760 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0090 0.8600 0.5637 5 6 3.1567 -1.2875 0.6487 6 6 2.6472 -2.4938 -0.1426 7 6 3.1571 -2.4111 -1.5828 8 1 4.2471 -2.4106 -1.5828 9 7 2.6698 -3.5665 -2.3404 10 16 3.6218 -4.2513 -3.5097 11 8 2.8659 -5.3163 -4.0696 12 8 4.1431 -3.1783 -4.2818 13 6 4.9973 -4.9920 -2.6947 14 6 5.8120 -5.8748 -3.3781 15 6 5.5238 -6.2042 -4.8201 16 8 5.9384 -5.1167 -5.6492 17 14 6.4548 -7.7438 -5.3036 18 6 6.8910 -6.4564 -2.7385 19 6 7.1551 -6.1546 -1.4158 20 6 6.3407 -5.2708 -0.7325 21 6 5.2646 -4.6859 -1.3732 22 6 2.6465 -1.1230 -2.2315 23 6 3.1560 0.0833 -1.4402 24 1 -1.0500 -0.0010 -0.0001 25 1 2.7934 -1.3463 1.6747 26 1 4.2467 -1.2867 0.6491 27 1 3.0113 -3.4114 0.3193 28 1 1.5573 -2.4943 -0.1426 29 1 1.7895 -3.9304 -2.1570 30 1 4.4542 -6.3712 -4.9478 31 1 5.5517 -4.2652 -5.4036 32 1 7.9159 -7.5185 -5.1642 33 1 6.0325 -8.8822 -4.4486 34 1 7.5274 -7.1465 -3.2724 35 1 7.9976 -6.6093 -0.9161 36 1 6.5468 -5.0353 0.3012 37 1 4.6306 -3.9926 -0.8405 38 1 1.5565 -1.1236 -2.2315 39 1 3.0102 -1.0640 -3.2574 40 1 2.7918 1.0009 -1.9021 41 1 4.2459 0.0838 -1.4402 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17761048_2726874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:39 Heat of formation + Delta-G solvation = -22.405447 kcal Electronic energy + Delta-G solvation = -26249.226776 eV Core-core repulsion = 22610.080546 eV Total energy + Delta-G solvation = -3639.146230 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.107 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91513 -40.50830 -38.33757 -37.91883 -36.89023 -36.24173 -33.07108 -32.89764 -32.64086 -31.99255 -29.96934 -27.03218 -24.62963 -24.08935 -23.89518 -23.17561 -21.88802 -20.75859 -19.47686 -18.84228 -18.25492 -18.07437 -17.77906 -17.17702 -16.80072 -16.60196 -16.11129 -15.97046 -15.71635 -15.51460 -15.38017 -15.16108 -14.45465 -14.32547 -14.11966 -13.81990 -13.71518 -13.43812 -13.38838 -13.33183 -13.21795 -13.10243 -12.94034 -12.37808 -12.29208 -12.19409 -12.11993 -11.94435 -11.58580 -11.53447 -11.14948 -10.99002 -10.95765 -10.68567 -10.58324 -10.22282 -4.84705 -0.82986 -0.46600 -0.06426 1.28675 1.62261 1.64708 1.87273 1.88972 1.92223 2.19212 2.38281 3.21310 3.22367 3.28880 3.39867 3.46165 3.54627 3.62125 3.70436 3.75541 3.89419 3.91625 3.97758 4.00058 4.05735 4.25376 4.29020 4.31877 4.33799 4.38247 4.55071 4.59485 4.64587 4.72501 4.85029 4.91384 4.93509 4.97006 5.05762 5.07490 5.11472 5.18235 5.27543 5.51399 5.70560 6.42603 6.69529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.016 3.984 4 H 0.097 0.903 5 C -0.111 4.111 6 C -0.131 4.131 7 C 0.146 3.854 8 H 0.089 0.911 9 N -1.109 6.109 10 S 2.689 3.311 11 O -0.949 6.949 12 O -0.946 6.946 13 C -0.665 4.665 14 C -0.008 4.008 15 C -0.150 4.150 16 O -0.530 6.530 17 Si 0.770 3.230 18 C -0.134 4.134 19 C -0.058 4.058 20 C -0.130 4.130 21 C -0.039 4.039 22 C -0.140 4.140 23 C -0.111 4.111 24 H 0.215 0.785 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.423 0.577 30 H 0.105 0.895 31 H 0.369 0.631 32 H -0.247 1.247 33 H -0.244 1.244 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 0.417 4.865 4.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.177 4.177 3 C -0.002 4.002 4 H 0.115 0.885 5 C -0.149 4.149 6 C -0.170 4.170 7 C 0.040 3.960 8 H 0.107 0.893 9 N -0.870 5.870 10 S 2.777 3.223 11 O -0.939 6.939 12 O -0.935 6.935 13 C -0.751 4.751 14 C -0.010 4.010 15 C -0.257 4.257 16 O -0.339 6.339 17 Si 0.667 3.333 18 C -0.153 4.153 19 C -0.076 4.076 20 C -0.149 4.149 21 C -0.057 4.057 22 C -0.179 4.179 23 C -0.149 4.149 24 H 0.232 0.768 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.259 0.741 30 H 0.123 0.877 31 H 0.220 0.780 32 H -0.172 1.172 33 H -0.168 1.168 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.074 -0.589 3.909 4.096 hybrid contribution -0.723 0.878 2.073 2.365 sum 0.351 0.289 5.982 5.999 Atomic orbital electron populations 1.24952 0.95976 1.00908 1.00689 1.22868 0.94117 1.00301 1.00434 1.18424 0.85021 0.99156 0.97585 0.88549 1.21562 1.01167 0.92706 0.99451 1.21951 1.02706 0.98912 0.93448 1.21055 0.98506 0.84868 0.91614 0.89320 1.55513 1.30567 1.42788 1.58100 1.02250 0.73410 0.73647 0.72986 1.93623 1.69713 1.55587 1.74953 1.93603 1.80118 1.54094 1.65733 1.30788 1.22218 1.14834 1.07238 1.19901 0.92979 0.92443 0.95713 1.26214 1.09165 1.02724 0.87611 1.86783 1.73227 1.18605 1.55237 0.92392 0.77497 0.72966 0.90486 1.21229 0.97380 1.00803 0.95864 1.21509 0.97872 0.94486 0.93698 1.21371 0.95329 0.97446 1.00750 1.21153 0.96396 0.96305 0.91892 1.22100 1.02295 0.93024 1.00480 1.21565 1.01223 0.98691 0.93433 0.76783 0.90568 0.90391 0.90815 0.90237 0.74104 0.87747 0.78032 1.17212 1.16815 0.84748 0.84414 0.84350 0.83999 0.90689 0.89853 0.90618 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 0.04 19.25 29.55 0.57 0.61 16 2 C -0.18 0.02 10.06 -37.12 -0.37 -0.36 16 3 C 0.02 -0.03 3.07 -93.40 -0.29 -0.32 16 4 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 5 C -0.11 0.37 5.43 -26.73 -0.15 0.22 16 6 C -0.13 0.40 4.99 -26.73 -0.13 0.27 16 7 C 0.15 -0.28 1.44 -67.93 -0.10 -0.38 16 8 H 0.09 -0.24 6.22 -51.93 -0.32 -0.57 16 9 N -1.11 1.35 5.10 -4.89 -0.02 1.33 16 10 S 2.69 5.35 4.54 -107.50 -0.49 4.86 16 11 O -0.95 -4.25 15.78 -57.17 -0.90 -5.15 16 12 O -0.95 -3.57 15.02 -57.64 -0.87 -4.44 16 13 C -0.67 -1.35 5.78 -39.59 -0.23 -1.57 16 14 C -0.01 -0.03 5.22 -104.62 -0.55 -0.57 16 15 C -0.15 -0.53 2.10 36.01 0.08 -0.45 16 16 O -0.53 -2.45 12.68 -35.23 -0.45 -2.90 16 17 Si 0.77 0.81 30.45 -169.99 -5.18 -4.37 16 18 C -0.13 -0.28 8.66 -39.58 -0.34 -0.62 16 19 C -0.06 0.00 10.05 -39.58 -0.40 -0.40 16 20 C -0.13 0.11 10.05 -39.58 -0.40 -0.28 16 21 C -0.04 0.01 8.92 -39.58 -0.35 -0.34 16 22 C -0.14 0.12 5.31 -26.73 -0.14 -0.02 16 23 C -0.11 0.21 5.43 -26.73 -0.15 0.06 16 24 H 0.22 -0.56 7.80 -54.09 -0.42 -0.99 16 25 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 26 H 0.08 -0.36 8.14 -51.93 -0.42 -0.79 16 27 H 0.07 -0.31 7.30 -51.93 -0.38 -0.69 16 28 H 0.08 -0.19 7.23 -51.93 -0.38 -0.56 16 29 H 0.42 -1.22 8.84 -34.47 -0.30 -1.53 16 30 H 0.10 0.36 5.54 -51.93 -0.29 0.07 16 31 H 0.37 1.51 6.05 45.56 0.28 1.78 16 32 H -0.25 -0.57 6.77 56.52 0.38 -0.19 16 33 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 34 H 0.14 0.16 4.95 -52.49 -0.26 -0.10 16 35 H 0.14 -0.37 8.06 -52.49 -0.42 -0.79 16 36 H 0.14 -0.51 8.06 -52.48 -0.42 -0.94 16 37 H 0.14 -0.44 3.92 -52.48 -0.21 -0.64 16 38 H 0.07 -0.03 7.23 -51.93 -0.38 -0.40 16 39 H 0.08 0.03 7.67 -51.93 -0.40 -0.37 16 40 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 41 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 LS Contribution 332.76 15.07 5.01 5.01 Total: 0.00 -8.04 332.76 -11.06 -19.10 By element: Atomic # 1 Polarization: -4.06 SS G_CDS: -5.23 Total: -9.29 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.94 Total: -4.15 kcal Atomic # 7 Polarization: 1.35 SS G_CDS: -0.02 Total: 1.33 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -2.22 Total: -12.49 kcal Atomic # 14 Polarization: 0.81 SS G_CDS: -5.18 Total: -4.37 kcal Atomic # 16 Polarization: 5.35 SS G_CDS: -0.49 Total: 4.86 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -8.04 -11.06 -19.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_2726874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.306 kcal (2) G-P(sol) polarization free energy of solvation -8.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds