Wall clock time and date at job start Mon Mar 8 2021 14:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08996 * 109.46822 * 213.27005 * 3 2 1 5 5 C 1.52996 * 109.47247 * 333.27354 * 3 2 1 6 6 C 1.53000 * 109.47393 * 59.99676 * 5 3 2 7 7 C 1.53005 * 109.46847 * 59.99886 * 6 5 3 8 8 H 1.09002 * 109.46949 * 60.00004 * 7 6 5 9 9 N 1.46500 * 109.47156 * 179.97438 * 7 6 5 10 10 S 1.65600 * 120.00088 * 215.19874 * 9 7 6 11 11 O 1.42100 * 106.39999 * 181.13574 * 10 9 7 12 12 O 1.42099 * 106.39979 * 314.05521 * 10 9 7 13 13 C 1.76200 * 107.21958 * 67.59431 * 10 9 7 14 14 C 1.38207 * 120.00164 * 166.43473 * 13 10 9 15 15 C 1.50700 * 120.00132 * 359.97438 * 14 13 10 16 16 O 1.42903 * 109.46867 * 76.19578 * 15 14 13 17 17 Si 1.86298 * 109.47565 * 196.19993 * 15 14 13 18 18 C 1.38261 * 120.00107 * 180.02562 * 14 13 10 19 19 C 1.38218 * 119.99838 * 359.97438 * 18 14 13 20 20 C 1.38253 * 119.99921 * 359.97261 * 19 18 14 21 21 C 1.38217 * 120.00051 * 359.81536 * 20 19 18 22 22 C 1.52996 * 109.47217 * 300.00221 * 7 6 5 23 23 C 1.53000 * 109.47393 * 60.00112 * 22 7 6 24 24 H 4.18742 * 15.03876 * 0.02562 * 4 2 1 25 25 H 1.09000 * 109.46849 * 299.99887 * 5 3 2 26 26 H 1.09002 * 109.46983 * 180.02562 * 5 3 2 27 27 H 1.09000 * 109.47296 * 179.97438 * 6 5 3 28 28 H 1.08992 * 109.47315 * 300.00240 * 6 5 3 29 29 H 0.97002 * 119.99636 * 35.19225 * 9 7 6 30 30 H 1.09005 * 109.46830 * 316.20321 * 15 14 13 31 31 H 0.96692 * 114.00320 * 305.06032 * 16 15 14 32 32 H 1.48497 * 109.99841 * 298.68115 * 17 15 14 33 33 H 1.48500 * 109.99766 * 60.00036 * 17 15 14 34 34 H 1.07999 * 119.99987 * 179.97438 * 18 14 13 35 35 H 1.07997 * 119.99469 * 179.97438 * 19 18 14 36 36 H 1.08005 * 119.99459 * 179.97438 * 20 19 18 37 37 H 1.08006 * 119.99706 * 180.23026 * 21 20 19 38 38 H 1.09002 * 109.46983 * 299.99761 * 22 7 6 39 39 H 1.09000 * 109.46849 * 179.97438 * 22 7 6 40 40 H 1.09000 * 109.47296 * 180.02562 * 23 22 7 41 41 H 1.08992 * 109.47315 * 59.99760 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0090 0.8600 0.5637 5 6 3.1567 -1.2875 0.6487 6 6 2.6472 -2.4938 -0.1426 7 6 3.1571 -2.4111 -1.5828 8 1 4.2471 -2.4106 -1.5828 9 7 2.6698 -3.5665 -2.3404 10 16 3.6218 -4.2513 -3.5097 11 8 2.8659 -5.3163 -4.0696 12 8 4.1431 -3.1783 -4.2818 13 6 4.9973 -4.9920 -2.6947 14 6 5.8120 -5.8748 -3.3781 15 6 5.5238 -6.2042 -4.8201 16 8 5.9384 -5.1167 -5.6492 17 14 6.4548 -7.7438 -5.3036 18 6 6.8910 -6.4564 -2.7385 19 6 7.1551 -6.1546 -1.4158 20 6 6.3407 -5.2708 -0.7325 21 6 5.2646 -4.6859 -1.3732 22 6 2.6465 -1.1230 -2.2315 23 6 3.1560 0.0833 -1.4402 24 1 -1.0500 -0.0010 -0.0001 25 1 2.7934 -1.3463 1.6747 26 1 4.2467 -1.2867 0.6491 27 1 3.0113 -3.4114 0.3193 28 1 1.5573 -2.4943 -0.1426 29 1 1.7895 -3.9304 -2.1570 30 1 4.4542 -6.3712 -4.9478 31 1 5.5517 -4.2652 -5.4036 32 1 7.9159 -7.5185 -5.1642 33 1 6.0325 -8.8822 -4.4486 34 1 7.5274 -7.1465 -3.2724 35 1 7.9976 -6.6093 -0.9161 36 1 6.5468 -5.0353 0.3012 37 1 4.6306 -3.9926 -0.8405 38 1 1.5565 -1.1236 -2.2315 39 1 3.0102 -1.0640 -3.2574 40 1 2.7918 1.0009 -1.9021 41 1 4.2459 0.0838 -1.4402 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17761048_2726874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:08:38 Heat of formation + Delta-G solvation = -21.608792 kcal Electronic energy + Delta-G solvation = -26249.192231 eV Core-core repulsion = 22610.080546 eV Total energy + Delta-G solvation = -3639.111685 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.107 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.93344 -40.37182 -38.56087 -38.12347 -37.11832 -36.17139 -33.06109 -32.88815 -32.63503 -31.80697 -29.85252 -27.15307 -24.63937 -23.94300 -23.70991 -23.22989 -21.76120 -20.83298 -19.59107 -18.87651 -18.36382 -18.07215 -17.74021 -17.23289 -16.83588 -16.63051 -16.14561 -15.95782 -15.71562 -15.36259 -15.35282 -15.25612 -14.40515 -14.23867 -14.15697 -13.89173 -13.76346 -13.61071 -13.44576 -13.34632 -13.23173 -13.11645 -12.86439 -12.32354 -12.22652 -12.12424 -12.11863 -11.90159 -11.68193 -11.45204 -11.21500 -11.03113 -10.86297 -10.66898 -10.52232 -10.24828 -4.93659 -0.95615 -0.49807 -0.08168 1.15611 1.51007 1.60683 1.74193 1.95066 1.98038 2.19282 2.25715 3.09570 3.16321 3.42599 3.45677 3.48888 3.58611 3.72100 3.74131 3.88164 3.91655 4.01448 4.10236 4.16541 4.16648 4.21324 4.38252 4.44359 4.49983 4.53833 4.55506 4.73998 4.77531 4.85981 4.96690 5.07439 5.09738 5.12775 5.18684 5.20523 5.25828 5.34521 5.43942 5.56991 5.84077 6.11932 6.76771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.189 4.189 3 C 0.013 3.987 4 H 0.106 0.894 5 C -0.109 4.109 6 C -0.128 4.128 7 C 0.142 3.858 8 H 0.101 0.899 9 N -1.098 6.098 10 S 2.697 3.303 11 O -0.982 6.982 12 O -0.971 6.971 13 C -0.678 4.678 14 C -0.038 4.038 15 C -0.175 4.175 16 O -0.542 6.542 17 Si 0.828 3.172 18 C -0.155 4.155 19 C -0.059 4.059 20 C -0.127 4.127 21 C -0.039 4.039 22 C -0.142 4.142 23 C -0.110 4.110 24 H 0.229 0.771 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.431 0.569 30 H 0.096 0.904 31 H 0.367 0.633 32 H -0.264 1.264 33 H -0.253 1.253 34 H 0.136 0.864 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.169 0.831 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 0.369 7.161 7.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.190 4.190 3 C -0.005 4.005 4 H 0.124 0.876 5 C -0.147 4.147 6 C -0.167 4.167 7 C 0.036 3.964 8 H 0.119 0.881 9 N -0.861 5.861 10 S 2.788 3.212 11 O -0.972 6.972 12 O -0.961 6.961 13 C -0.765 4.765 14 C -0.040 4.040 15 C -0.280 4.280 16 O -0.351 6.351 17 Si 0.724 3.276 18 C -0.174 4.174 19 C -0.077 4.077 20 C -0.145 4.145 21 C -0.057 4.057 22 C -0.182 4.182 23 C -0.148 4.148 24 H 0.246 0.754 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.269 0.731 30 H 0.114 0.886 31 H 0.218 0.782 32 H -0.190 1.190 33 H -0.178 1.178 34 H 0.153 0.847 35 H 0.183 0.817 36 H 0.193 0.807 37 H 0.187 0.813 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.976 -0.617 6.194 6.531 hybrid contribution -1.035 0.958 1.427 2.006 sum 0.941 0.340 7.621 7.686 Atomic orbital electron populations 1.25541 0.96906 1.01236 1.00908 1.23474 0.95064 1.00119 1.00294 1.18571 0.83923 1.00494 0.97498 0.87598 1.21604 1.02436 0.91451 0.99219 1.21958 1.02266 1.00113 0.92403 1.21229 0.99261 0.83719 0.92164 0.88088 1.55279 1.30540 1.42753 1.57524 1.01686 0.73354 0.72924 0.73270 1.93570 1.70659 1.56683 1.76256 1.93564 1.80609 1.54793 1.67098 1.30714 1.22071 1.15262 1.08450 1.19996 0.94337 0.93995 0.95656 1.26645 1.09369 1.03430 0.88554 1.86738 1.73408 1.18915 1.56001 0.91725 0.75347 0.70902 0.89621 1.21419 0.97351 1.01386 0.97195 1.21923 0.98660 0.94271 0.92840 1.21858 0.94215 0.96143 1.02261 1.21568 0.96917 0.96307 0.90941 1.22096 1.01747 0.94404 0.99929 1.21567 1.02072 0.97683 0.93458 0.75417 0.90179 0.88268 0.88861 0.91137 0.73137 0.88577 0.78239 1.18982 1.17787 0.84696 0.81652 0.80692 0.81350 0.91643 0.91635 0.91419 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -0.02 19.25 74.32 1.43 1.41 16 2 C -0.19 0.02 10.06 31.13 0.31 0.33 16 3 C 0.01 -0.06 3.07 -12.60 -0.04 -0.10 16 4 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 5 C -0.11 0.95 5.43 30.59 0.17 1.11 16 6 C -0.13 0.99 4.99 30.60 0.15 1.14 16 7 C 0.14 -0.62 1.44 44.99 0.06 -0.56 16 8 H 0.10 -0.69 6.22 -2.39 -0.01 -0.70 16 9 N -1.10 2.23 5.10 -169.38 -0.86 1.37 16 10 S 2.70 14.73 4.54 -56.49 -0.26 14.47 16 11 O -0.98 -11.06 15.78 -128.00 -2.02 -13.08 16 12 O -0.97 -9.36 15.02 -127.55 -1.92 -11.28 16 13 C -0.68 -3.05 5.78 22.27 0.13 -2.92 16 14 C -0.04 -0.29 5.22 -19.87 -0.10 -0.39 16 15 C -0.18 -1.59 2.10 71.24 0.15 -1.44 16 16 O -0.54 -6.32 12.68 -148.98 -1.89 -8.21 16 17 Si 0.83 2.70 30.45 68.60 2.09 4.79 16 18 C -0.16 -0.67 8.66 22.27 0.19 -0.48 16 19 C -0.06 0.10 10.05 22.27 0.22 0.33 16 20 C -0.13 0.56 10.05 22.27 0.22 0.78 16 21 C -0.04 0.08 8.92 22.27 0.20 0.28 16 22 C -0.14 0.15 5.31 30.59 0.16 0.32 16 23 C -0.11 0.43 5.43 30.60 0.17 0.60 16 24 H 0.23 -1.09 7.80 -4.42 -0.03 -1.12 16 25 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 27 H 0.09 -1.06 7.30 -2.39 -0.02 -1.07 16 28 H 0.07 -0.38 7.23 -2.39 -0.02 -0.40 16 29 H 0.43 -2.25 8.84 -96.74 -0.86 -3.11 16 30 H 0.10 0.94 5.54 -2.38 -0.01 0.93 16 31 H 0.37 4.07 6.05 -74.06 -0.45 3.62 16 32 H -0.26 -1.49 6.77 99.48 0.67 -0.82 16 33 H -0.25 -1.11 7.11 99.48 0.71 -0.40 16 34 H 0.14 0.41 4.95 -2.91 -0.01 0.39 16 35 H 0.17 -1.32 8.06 -2.91 -0.02 -1.34 16 36 H 0.18 -2.09 8.06 -2.91 -0.02 -2.11 16 37 H 0.17 -1.46 3.92 -2.91 -0.01 -1.48 16 38 H 0.06 0.04 7.23 -2.39 -0.02 0.02 16 39 H 0.06 0.16 7.67 -2.39 -0.02 0.14 16 40 H 0.07 -0.17 8.14 -2.39 -0.02 -0.18 16 41 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 Total: 0.00 -20.88 332.76 -1.65 -22.53 By element: Atomic # 1 Polarization: -10.79 SS G_CDS: -0.23 Total: -11.02 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 3.43 Total: 0.42 kcal Atomic # 7 Polarization: 2.23 SS G_CDS: -0.86 Total: 1.37 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -5.83 Total: -32.57 kcal Atomic # 14 Polarization: 2.70 SS G_CDS: 2.09 Total: 4.79 kcal Atomic # 16 Polarization: 14.73 SS G_CDS: -0.26 Total: 14.47 kcal Total: -20.88 -1.65 -22.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17761048_2726874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.924 kcal (2) G-P(sol) polarization free energy of solvation -20.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds