Wall clock time and date at job start Mon Mar 8 2021 11:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46751 * 2 1 4 4 C 1.52991 * 109.47361 * 240.00272 * 2 1 3 5 5 O 1.45201 * 109.47082 * 119.99597 * 2 1 3 6 6 C 1.34228 * 116.99416 * 60.00267 * 5 2 1 7 7 O 1.20825 * 120.00635 * 0.02562 * 6 5 2 8 8 C 1.50701 * 119.99693 * 179.97438 * 6 5 2 9 9 H 1.09006 * 112.84582 * 48.81164 * 8 6 5 10 10 C 1.53785 * 113.61659 * 179.97438 * 8 6 5 11 11 C 1.53778 * 87.08036 * 140.06786 * 10 8 6 12 12 O 1.42905 * 113.61130 * 89.20448 * 11 10 8 13 13 C 1.52996 * 113.61350 * 220.01991 * 11 10 8 14 14 N 1.46505 * 109.47200 * 180.02562 * 13 11 10 15 15 S 1.65597 * 120.00189 * 165.00080 * 14 13 11 16 16 O 1.42097 * 106.40390 * 311.45949 * 15 14 13 17 17 O 1.42102 * 106.40158 * 178.53809 * 15 14 13 18 18 C 1.76199 * 107.21885 * 65.00079 * 15 14 13 19 19 C 1.33390 * 125.20465 * 180.02562 * 18 15 14 20 20 C 1.50694 * 122.53585 * 0.04220 * 19 18 15 21 21 O 1.42905 * 109.47172 * 284.99672 * 20 19 18 22 22 Si 1.86302 * 109.46983 * 165.00311 * 20 19 18 23 23 C 1.38422 * 114.91870 * 180.02562 * 19 18 15 24 24 C 1.33383 * 114.92604 * 0.02562 * 23 19 18 25 25 S 1.75889 * 109.59330 * 359.97438 * 24 23 19 26 26 C 1.53775 * 113.69523 * 277.53889 * 8 6 5 27 27 H 1.08998 * 109.47321 * 300.00411 * 1 2 3 28 28 H 1.09003 * 109.46819 * 60.00254 * 1 2 3 29 29 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46880 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47548 * 299.99932 * 3 2 1 32 32 H 1.09000 * 109.47192 * 60.00127 * 3 2 1 33 33 H 1.09004 * 109.47256 * 299.99338 * 4 2 1 34 34 H 1.08994 * 109.47663 * 59.99821 * 4 2 1 35 35 H 1.09003 * 109.47367 * 180.02562 * 4 2 1 36 36 H 1.09000 * 113.61143 * 25.52053 * 10 8 6 37 37 H 1.09000 * 113.61343 * 254.61766 * 10 8 6 38 38 H 0.96703 * 113.99256 * 181.53029 * 12 11 10 39 39 H 1.09003 * 109.47331 * 60.00364 * 13 11 10 40 40 H 1.08995 * 109.47442 * 299.99955 * 13 11 10 41 41 H 0.97002 * 119.99447 * 345.00298 * 14 13 11 42 42 H 1.08996 * 109.47511 * 45.00467 * 20 19 18 43 43 H 0.96704 * 114.00070 * 179.97438 * 21 20 19 44 44 H 1.48500 * 110.00321 * 59.99798 * 22 20 19 45 45 H 1.48500 * 110.00224 * 181.31754 * 22 20 19 46 46 H 1.08006 * 122.53685 * 180.02562 * 23 19 18 47 47 H 1.07996 * 125.20664 * 180.02562 * 24 23 19 48 48 H 1.08997 * 113.61614 * 105.45888 * 26 8 6 49 49 H 1.08997 * 113.61564 * 334.55916 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3379 7 8 0.9567 -2.5028 0.5078 8 6 2.1182 -2.7436 2.5436 9 1 1.9547 -2.2090 3.4794 10 6 1.6196 -4.1982 2.5706 11 6 3.0129 -4.5832 3.0952 12 8 3.1194 -4.5433 4.5197 13 6 3.5566 -5.8813 2.4950 14 7 4.8811 -6.1611 3.0550 15 16 5.5519 -7.6654 2.8831 16 8 4.5503 -8.5975 3.2666 17 8 6.8331 -7.6057 3.4947 18 6 5.8334 -7.9174 1.1621 19 6 6.3641 -9.0158 0.6225 20 6 6.7937 -10.1993 1.4505 21 8 8.0174 -9.8920 2.1216 22 14 7.0475 -11.6742 0.3409 23 6 6.4897 -8.9863 -0.7557 24 6 6.0617 -7.8638 -1.3353 25 16 5.4587 -6.7586 -0.1070 26 6 3.5386 -3.3153 2.4007 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.1301 -0.7215 -1.2490 36 1 1.3980 -4.6021 1.5828 37 1 0.8190 -4.3720 3.2895 38 1 3.9999 -4.7618 4.8545 39 1 3.6340 -5.7767 1.4127 40 1 2.8809 -6.7027 2.7332 41 1 5.3652 -5.4652 3.5264 42 1 6.0228 -10.4269 2.1866 43 1 8.3538 -10.6104 2.6748 44 1 8.0964 -11.3768 -0.6674 45 1 7.4407 -12.8563 1.1492 46 1 6.9031 -9.8098 -1.3191 47 1 6.0815 -7.6643 -2.3965 48 1 4.2866 -2.7768 2.9826 49 1 3.8419 -3.4778 1.3665 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17792080_13652106.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:23:12 Heat of formation + Delta-G solvation = -167.948690 kcal Electronic energy + Delta-G solvation = -35590.590543 eV Core-core repulsion = 30739.852038 eV Total energy + Delta-G solvation = -4850.738505 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.109 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.21526 -40.73485 -39.97496 -38.42355 -38.04705 -37.40132 -37.09961 -36.13227 -35.49876 -34.98676 -31.53885 -29.27213 -28.39998 -28.32795 -28.16239 -26.92480 -25.96085 -24.21936 -22.64649 -21.80758 -20.91054 -20.49483 -20.06651 -19.74481 -18.88787 -18.79347 -18.15065 -17.75129 -17.51215 -17.35389 -17.09716 -16.97370 -16.44763 -16.12503 -15.94895 -15.86205 -15.58301 -15.35420 -15.10175 -14.68718 -14.65804 -14.33656 -14.22228 -14.20824 -13.74018 -13.71209 -13.44965 -13.43094 -13.38568 -13.35617 -13.28355 -13.12514 -12.95958 -12.88844 -12.84564 -12.77171 -12.63710 -12.49071 -12.42518 -12.29270 -12.00461 -11.66467 -11.53270 -11.40509 -11.11389 -10.86364 -10.74760 -10.70279 -10.42374 -9.63449 -5.00211 -0.87341 -0.68818 0.18704 0.60884 1.12592 1.15212 1.21078 1.55442 1.66847 1.77786 1.84370 2.42537 2.90702 3.12276 3.15837 3.34363 3.39271 3.47681 3.53363 3.68242 3.70830 3.77600 3.82904 3.87685 3.94815 4.07998 4.18843 4.23140 4.24421 4.29946 4.55747 4.58158 4.59945 4.63922 4.67614 4.73522 4.73980 4.79600 4.85153 4.88131 4.89266 4.95013 4.95293 5.04167 5.10028 5.16184 5.23165 5.26507 5.55767 5.75388 6.40540 6.64972 6.80050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 C -0.140 4.140 4 C -0.180 4.180 5 O -0.356 6.356 6 C 0.472 3.528 7 O -0.520 6.520 8 C -0.106 4.106 9 H 0.134 0.866 10 C -0.106 4.106 11 C 0.114 3.886 12 O -0.543 6.543 13 C 0.092 3.908 14 N -1.107 6.107 15 S 2.732 3.268 16 O -0.973 6.973 17 O -0.965 6.965 18 C -0.798 4.798 19 C 0.039 3.961 20 C -0.136 4.136 21 O -0.544 6.544 22 Si 0.795 3.205 23 C -0.176 4.176 24 C -0.152 4.152 25 S 0.233 5.767 26 C -0.141 4.141 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.392 0.608 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.432 0.568 42 H 0.083 0.917 43 H 0.398 0.602 44 H -0.271 1.271 45 H -0.277 1.277 46 H 0.172 0.828 47 H 0.213 0.787 48 H 0.105 0.895 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 2.670 -5.288 5.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.071 3.929 3 C -0.197 4.197 4 C -0.237 4.237 5 O -0.273 6.273 6 C 0.317 3.683 7 O -0.410 6.410 8 C -0.125 4.125 9 H 0.152 0.848 10 C -0.144 4.144 11 C 0.070 3.930 12 O -0.351 6.351 13 C -0.034 4.034 14 N -0.873 5.873 15 S 2.818 3.182 16 O -0.963 6.963 17 O -0.954 6.954 18 C -0.999 4.999 19 C 0.021 3.979 20 C -0.244 4.244 21 O -0.354 6.354 22 Si 0.695 3.305 23 C -0.205 4.205 24 C -0.289 4.289 25 S 0.500 5.500 26 C -0.178 4.178 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.243 0.757 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.270 0.730 42 H 0.101 0.899 43 H 0.249 0.751 44 H -0.197 1.197 45 H -0.203 1.203 46 H 0.189 0.811 47 H 0.229 0.771 48 H 0.123 0.877 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.824 3.463 -5.690 6.906 hybrid contribution 2.007 -0.985 0.680 2.336 sum 0.182 2.478 -5.010 5.593 Atomic orbital electron populations 1.22469 0.94155 1.03674 1.03558 1.22428 0.94421 0.93249 0.82792 1.21883 1.02428 0.91425 1.03934 1.22455 1.01891 1.02221 0.97103 1.86574 1.69650 1.25408 1.45681 1.23783 0.76600 0.80528 0.87422 1.90582 1.35950 1.70344 1.44084 1.22497 0.99672 0.94917 0.95367 0.84813 1.23123 0.95923 0.91960 1.03399 1.22117 0.97265 0.91722 0.81856 1.86545 1.38024 1.92377 1.18114 1.22204 0.82536 0.99728 0.98967 1.55229 1.28158 1.32109 1.71759 1.00716 0.72545 0.72586 0.72350 1.93587 1.60478 1.61436 1.80782 1.93622 1.41546 1.85836 1.74445 1.35530 1.25725 1.08936 1.29738 1.18170 0.92540 0.92603 0.94565 1.25496 0.89780 1.06031 1.03121 1.86645 1.38530 1.44846 1.65415 0.93648 0.86882 0.71458 0.78468 1.20446 1.05847 1.01571 0.92652 1.26597 1.00298 0.96293 1.05674 1.83779 1.58310 1.15307 0.92649 1.23735 0.94806 0.95929 1.03364 0.92011 0.89645 0.91629 0.91171 0.88806 0.91481 0.91416 0.89767 0.91542 0.86520 0.89121 0.75693 0.88819 0.88709 0.72981 0.89919 0.75082 1.19661 1.20326 0.81131 0.77059 0.87675 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.21 8.37 71.98 0.60 0.40 16 2 C 0.11 0.06 1.13 -10.80 -0.01 0.05 16 3 C -0.14 0.44 8.85 71.98 0.64 1.07 16 4 C -0.18 0.05 8.37 71.98 0.60 0.65 16 5 O -0.36 -0.93 9.89 -51.40 -0.51 -1.44 16 6 C 0.47 1.01 6.80 71.24 0.48 1.49 16 7 O -0.52 -3.09 11.40 21.97 0.25 -2.84 16 8 C -0.11 0.28 4.19 -11.01 -0.05 0.23 16 9 H 0.13 -0.45 8.14 -2.38 -0.02 -0.47 16 10 C -0.11 0.32 6.80 31.12 0.21 0.53 16 11 C 0.11 -0.56 1.44 -10.26 -0.01 -0.57 16 12 O -0.54 1.67 13.40 -148.98 -2.00 -0.32 16 13 C 0.09 -0.42 5.62 86.38 0.49 0.06 16 14 N -1.11 3.80 5.38 -187.49 -1.01 2.79 16 15 S 2.73 14.47 5.07 -56.49 -0.29 14.18 16 16 O -0.97 -10.05 16.97 -128.00 -2.17 -12.22 16 17 O -0.96 -11.31 17.44 -125.70 -2.19 -13.50 16 18 C -0.80 -2.98 6.46 66.72 0.43 -2.55 16 19 C 0.04 0.16 5.17 -20.92 -0.11 0.06 16 20 C -0.14 -0.55 2.32 71.23 0.17 -0.39 16 21 O -0.54 -3.85 12.27 -148.13 -1.82 -5.67 16 22 Si 0.80 -1.27 30.42 68.60 2.09 0.82 16 23 C -0.18 0.14 8.74 21.21 0.19 0.32 16 24 C -0.15 0.68 11.23 66.72 0.75 1.43 16 25 S 0.23 -0.73 21.09 -56.49 -1.19 -1.92 16 26 C -0.14 0.92 7.02 31.13 0.22 1.14 16 27 H 0.06 0.06 8.14 -2.39 -0.02 0.05 16 28 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.06 0.34 5.89 -2.38 -0.01 0.33 16 30 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.07 0.23 5.89 -2.38 -0.01 0.21 16 34 H 0.08 -0.24 8.14 -2.39 -0.02 -0.25 16 35 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.12 -0.38 7.39 -2.39 -0.02 -0.40 16 37 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.39 -3.42 7.62 -74.06 -0.56 -3.99 16 39 H 0.09 -0.72 6.06 -2.39 -0.01 -0.73 16 40 H 0.09 -0.28 7.75 -2.39 -0.02 -0.30 16 41 H 0.43 -3.64 7.71 -96.74 -0.75 -4.39 16 42 H 0.08 0.31 7.24 -2.39 -0.02 0.29 16 43 H 0.40 -0.43 8.74 -74.05 -0.65 -1.08 16 44 H -0.27 -0.53 6.86 99.48 0.68 0.16 16 45 H -0.28 -0.59 7.11 99.48 0.71 0.11 16 46 H 0.17 -0.78 5.57 -2.91 -0.02 -0.80 16 47 H 0.21 -2.46 8.06 -2.91 -0.02 -2.48 16 48 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.11 -0.85 7.92 -2.39 -0.02 -0.87 16 Total: 0.00 -28.12 417.07 -5.16 -33.28 By element: Atomic # 1 Polarization: -16.15 SS G_CDS: -0.92 Total: -17.07 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 4.59 Total: 3.91 kcal Atomic # 7 Polarization: 3.80 SS G_CDS: -1.01 Total: 2.79 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -8.44 Total: -35.99 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.09 Total: 0.82 kcal Atomic # 16 Polarization: 13.74 SS G_CDS: -1.48 Total: 12.26 kcal Total: -28.12 -5.16 -33.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17792080_13652106.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.671 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds