Wall clock time and date at job start Mon Mar 8 2021 11:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 C 1.52998 * 109.46827 * 239.99877 * 2 1 3 5 5 O 1.45203 * 109.47194 * 120.00332 * 2 1 3 6 6 C 1.34227 * 117.00401 * 59.99727 * 5 2 1 7 7 O 1.20827 * 119.99990 * 0.02562 * 6 5 2 8 8 C 1.50697 * 119.99979 * 180.02562 * 6 5 2 9 9 H 1.09000 * 112.85121 * 48.80117 * 8 6 5 10 10 C 1.53782 * 113.61181 * 179.97438 * 8 6 5 11 11 C 1.53787 * 87.07787 * 139.97771 * 10 8 6 12 12 O 1.42901 * 113.61550 * 89.20165 * 11 10 8 13 13 C 1.53002 * 113.61374 * 220.01800 * 11 10 8 14 14 N 1.46494 * 109.47189 * 178.47338 * 13 11 10 15 15 S 1.65599 * 120.00240 * 163.47820 * 14 13 11 16 16 O 1.42101 * 106.40226 * 310.42935 * 15 14 13 17 17 O 1.42103 * 106.40606 * 177.50877 * 15 14 13 18 18 C 1.76206 * 107.21784 * 63.96752 * 15 14 13 19 19 C 1.33384 * 122.53679 * 67.33737 * 18 15 14 20 20 C 1.50704 * 125.20612 * 0.24754 * 19 18 15 21 21 O 1.42902 * 109.47033 * 317.63876 * 20 19 18 22 22 Si 1.86300 * 109.47233 * 197.63491 * 20 19 18 23 23 S 1.75888 * 109.59437 * 179.97438 * 19 18 15 24 24 C 1.75882 * 90.96855 * 0.02562 * 23 19 18 25 25 C 1.33390 * 109.59346 * 359.97438 * 24 23 19 26 26 C 1.53781 * 87.17318 * 334.60831 * 11 10 8 27 27 H 1.09000 * 109.47016 * 299.99869 * 1 2 3 28 28 H 1.08990 * 109.47186 * 60.00047 * 1 2 3 29 29 H 1.09005 * 109.46829 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46804 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46668 * 299.99743 * 3 2 1 32 32 H 1.09000 * 109.47103 * 60.00184 * 3 2 1 33 33 H 1.09008 * 109.47327 * 300.00092 * 4 2 1 34 34 H 1.08997 * 109.47141 * 59.99666 * 4 2 1 35 35 H 1.08999 * 109.47149 * 180.02562 * 4 2 1 36 36 H 1.08998 * 113.61655 * 25.43535 * 10 8 6 37 37 H 1.09002 * 113.61692 * 254.52402 * 10 8 6 38 38 H 0.96695 * 113.99924 * 181.52598 * 12 11 10 39 39 H 1.08993 * 109.47259 * 58.47105 * 13 11 10 40 40 H 1.09000 * 109.47221 * 298.47081 * 13 11 10 41 41 H 0.97004 * 120.00262 * 343.48127 * 14 13 11 42 42 H 1.09005 * 109.47135 * 77.63218 * 20 19 18 43 43 H 0.96698 * 113.99810 * 180.02562 * 21 20 19 44 44 H 1.48495 * 110.00286 * 298.67954 * 22 20 19 45 45 H 1.48498 * 109.99964 * 60.00332 * 22 20 19 46 46 H 1.07998 * 125.20387 * 179.97438 * 24 23 19 47 47 H 1.08003 * 122.54014 * 179.97438 * 25 24 23 48 48 H 1.09004 * 113.61277 * 139.94124 * 26 11 10 49 49 H 1.08999 * 113.61360 * 270.84116 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0141 -0.6846 1.1855 6 6 1.6534 -1.9685 1.3379 7 8 0.9567 -2.5028 0.5078 8 6 2.1175 -2.7434 2.5441 9 1 1.9535 -2.2086 3.4796 10 6 1.6190 -4.1979 2.5710 11 6 3.0128 -4.5831 3.0945 12 8 3.1203 -4.5436 4.5189 13 6 3.5561 -5.8810 2.4935 14 7 4.8963 -6.1415 3.0244 15 16 5.5638 -7.6505 2.8839 16 8 4.5836 -8.5678 3.3496 17 8 6.8711 -7.5639 3.4343 18 6 5.7686 -7.9721 1.1636 19 6 6.6344 -7.2974 0.4057 20 6 7.5423 -6.1976 0.8928 21 8 6.8192 -5.3402 1.7783 22 14 8.1581 -5.2105 -0.5623 23 16 6.5601 -7.8930 -1.2476 24 6 5.3202 -9.0587 -0.8035 25 6 5.0434 -8.9441 0.4963 26 6 3.5397 -3.3155 2.4014 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 1.3967 -4.6017 1.5832 37 1 0.8189 -4.3721 3.2904 38 1 4.0010 -4.7622 4.8530 39 1 3.6071 -5.7858 1.4089 40 1 2.8949 -6.7072 2.7549 41 1 5.3929 -5.4300 3.4583 42 1 8.3902 -6.6336 1.4211 43 1 7.3426 -4.6076 2.1310 44 1 8.9389 -6.0840 -1.4747 45 1 7.0116 -4.6107 -1.2909 46 1 4.8542 -9.7601 -1.4798 47 1 4.3085 -9.5622 0.9905 48 1 4.2879 -2.7782 2.9842 49 1 3.8434 -3.4775 1.3672 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17792080_14772022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:23:19 Heat of formation + Delta-G solvation = -160.544444 kcal Electronic energy + Delta-G solvation = -36618.599543 eV Core-core repulsion = 31768.182110 eV Total energy + Delta-G solvation = -4850.417433 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.109 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -42.16531 -40.71118 -39.61684 -38.28770 -37.97763 -37.52305 -36.72486 -35.96551 -35.34985 -34.96247 -32.06369 -29.16194 -28.39119 -28.37170 -27.56332 -27.00138 -25.88502 -24.34327 -22.59572 -21.83249 -20.95003 -20.45941 -20.10370 -19.14643 -18.90010 -18.54785 -18.15828 -17.95112 -17.48531 -17.43863 -17.04627 -16.78065 -16.36591 -16.19517 -15.89439 -15.56002 -15.33866 -15.17470 -15.06504 -14.95549 -14.66456 -14.54114 -14.23767 -14.20841 -13.78061 -13.68826 -13.49860 -13.37274 -13.20632 -13.12996 -13.04107 -12.98283 -12.95176 -12.89533 -12.87646 -12.79176 -12.65777 -12.47147 -12.29808 -12.23715 -12.03042 -11.81909 -11.52858 -11.35867 -11.09907 -10.95563 -10.71724 -10.50122 -10.18870 -9.84181 -5.43598 -0.66490 -0.47887 0.22993 0.58599 0.89430 1.08940 1.22778 1.35807 1.66887 1.68504 2.07690 2.71048 2.83084 2.96988 3.13519 3.37244 3.38319 3.41217 3.47114 3.56819 3.70607 3.76857 3.87320 3.93232 3.99891 4.14252 4.16494 4.24101 4.31197 4.39608 4.51014 4.54651 4.56393 4.58575 4.63538 4.71406 4.72060 4.74660 4.83561 4.84287 4.86692 4.90245 4.92425 5.03659 5.07608 5.09526 5.25334 5.28680 5.59305 5.96359 6.16690 6.50056 6.87552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.348 6.348 6 C 0.474 3.526 7 O -0.502 6.502 8 C -0.106 4.106 9 H 0.129 0.871 10 C -0.104 4.104 11 C 0.108 3.892 12 O -0.531 6.531 13 C 0.105 3.895 14 N -1.091 6.091 15 S 2.726 3.274 16 O -0.959 6.959 17 O -0.951 6.951 18 C -0.663 4.663 19 C -0.053 4.053 20 C -0.066 4.066 21 O -0.544 6.544 22 Si 0.686 3.314 23 S 0.134 5.866 24 C -0.209 4.209 25 C -0.076 4.076 26 C -0.140 4.140 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.381 0.619 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.418 0.582 42 H 0.111 0.889 43 H 0.395 0.605 44 H -0.237 1.237 45 H -0.236 1.236 46 H 0.177 0.823 47 H 0.161 0.839 48 H 0.090 0.910 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 5.337 -2.196 6.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.266 6.266 6 C 0.317 3.683 7 O -0.389 6.389 8 C -0.125 4.125 9 H 0.147 0.853 10 C -0.142 4.142 11 C 0.065 3.935 12 O -0.337 6.337 13 C -0.022 4.022 14 N -0.854 5.854 15 S 2.811 3.189 16 O -0.949 6.949 17 O -0.941 6.941 18 C -0.762 4.762 19 C -0.173 4.173 20 C -0.178 4.178 21 O -0.353 6.353 22 Si 0.584 3.416 23 S 0.397 5.603 24 C -0.344 4.344 25 C -0.104 4.104 26 C -0.178 4.178 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.230 0.770 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.255 0.745 42 H 0.128 0.872 43 H 0.246 0.754 44 H -0.161 1.161 45 H -0.160 1.160 46 H 0.194 0.806 47 H 0.179 0.821 48 H 0.109 0.891 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.145 4.674 -4.366 7.127 hybrid contribution -0.228 -0.499 0.630 0.836 sum 2.917 4.175 -3.736 6.316 Atomic orbital electron populations 1.22500 0.93900 1.04751 1.02977 1.22222 0.94482 0.92368 0.82900 1.21865 1.02278 0.92472 1.03275 1.22492 1.01650 1.03085 0.96795 1.86566 1.69604 1.25229 1.45154 1.23438 0.77050 0.80579 0.87242 1.90587 1.35098 1.70012 1.43250 1.22488 0.98952 0.95112 0.95968 0.85271 1.23069 0.95878 0.92014 1.03190 1.22192 0.97208 0.92168 0.81905 1.86546 1.36878 1.92337 1.17960 1.21808 0.82889 0.98855 0.98633 1.55222 1.25360 1.30902 1.73895 1.01126 0.73162 0.72150 0.72474 1.93599 1.61620 1.61621 1.78083 1.93571 1.38499 1.85908 1.76115 1.29982 1.09217 1.08308 1.28645 1.23685 0.98581 0.98317 0.96766 1.24439 0.95919 0.93552 1.03897 1.86340 1.40990 1.43397 1.64601 0.94477 0.84159 0.86434 0.76530 1.84508 1.37391 1.31472 1.06916 1.25921 1.03216 1.05327 0.99947 1.19815 0.99820 0.97380 0.93400 1.23652 0.94914 0.96529 1.02708 0.91892 0.90888 0.89828 0.91398 0.90222 0.91348 0.89898 0.90902 0.92006 0.86952 0.88879 0.76999 0.90656 0.89170 0.74514 0.87174 0.75406 1.16055 1.15968 0.80584 0.82136 0.89110 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.16 8.37 37.16 0.31 0.15 16 2 C 0.12 0.08 1.13 -90.62 -0.10 -0.02 16 3 C -0.14 0.15 8.85 37.16 0.33 0.48 16 4 C -0.18 -0.10 8.37 37.16 0.31 0.21 16 5 O -0.35 -0.55 9.89 -39.25 -0.39 -0.94 16 6 C 0.47 0.71 6.80 36.00 0.24 0.95 16 7 O -0.50 -1.74 11.40 -18.75 -0.21 -1.95 16 8 C -0.11 0.09 4.20 -90.87 -0.38 -0.29 16 9 H 0.13 -0.16 8.14 -51.93 -0.42 -0.59 16 10 C -0.10 0.08 6.80 -25.91 -0.18 -0.09 16 11 C 0.11 -0.21 1.42 -89.80 -0.13 -0.33 16 12 O -0.53 0.61 13.40 -35.23 -0.47 0.14 16 13 C 0.11 -0.17 5.85 -4.04 -0.02 -0.20 16 14 N -1.09 2.21 3.73 -10.62 -0.04 2.17 16 15 S 2.73 4.41 4.92 -107.50 -0.53 3.89 16 16 O -0.96 -4.61 16.83 -57.17 -0.96 -5.57 16 17 O -0.95 -3.27 16.55 -63.53 -1.05 -4.32 16 18 C -0.66 -1.04 5.75 -41.21 -0.24 -1.27 16 19 C -0.05 -0.04 5.77 -36.00 -0.21 -0.25 16 20 C -0.07 0.14 2.12 36.01 0.08 0.21 16 21 O -0.54 2.36 7.91 -48.65 -0.38 1.97 16 22 Si 0.69 -2.05 31.13 -169.99 -5.29 -7.35 16 23 S 0.13 0.10 20.79 -107.50 -2.24 -2.13 16 24 C -0.21 -0.09 11.23 29.04 0.33 0.24 16 25 C -0.08 -0.10 9.69 -41.21 -0.40 -0.50 16 26 C -0.14 0.37 7.03 -25.83 -0.18 0.19 16 27 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 29 H 0.08 0.22 5.89 -51.93 -0.31 -0.08 16 30 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 31 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 32 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.08 0.19 5.89 -51.92 -0.31 -0.11 16 34 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 35 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 36 H 0.11 -0.06 7.39 -51.93 -0.38 -0.45 16 37 H 0.09 -0.04 8.14 -51.93 -0.42 -0.47 16 38 H 0.38 -1.54 7.75 45.56 0.35 -1.19 16 39 H 0.08 -0.16 7.98 -51.93 -0.41 -0.57 16 40 H 0.09 -0.07 7.75 -51.93 -0.40 -0.47 16 41 H 0.42 -1.91 6.74 -34.47 -0.23 -2.14 16 42 H 0.11 -0.29 7.92 -51.93 -0.41 -0.70 16 43 H 0.40 -3.61 8.74 45.56 0.40 -3.21 16 44 H -0.24 0.13 7.11 56.52 0.40 0.53 16 45 H -0.24 0.04 7.11 56.52 0.40 0.44 16 46 H 0.18 -0.35 8.06 -52.49 -0.42 -0.77 16 47 H 0.16 0.08 7.74 -52.48 -0.41 -0.33 16 48 H 0.09 -0.36 8.14 -51.93 -0.42 -0.78 16 49 H 0.10 -0.24 7.94 -51.93 -0.41 -0.65 16 LS Contribution 415.33 15.07 6.26 6.26 Total: 0.00 -11.30 415.33 -11.92 -23.22 By element: Atomic # 1 Polarization: -8.48 SS G_CDS: -6.37 Total: -14.85 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.24 Total: -0.53 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -0.04 Total: 2.17 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -3.47 Total: -10.67 kcal Atomic # 14 Polarization: -2.05 SS G_CDS: -5.29 Total: -7.35 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -2.76 Total: 1.75 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -11.30 -11.92 -23.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17792080_14772022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.324 kcal (2) G-P(sol) polarization free energy of solvation -11.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds